Mock Version: 5.5 Mock Version: 5.5 Mock Version: 5.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f41-build-50458170-6038590/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4g374tqa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4g374tqa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'c9ef97592c8e466ab29ce27db43e14b7', '-D', '/var/lib/mock/f41-build-50458170-6038590/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4g374tqa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1706572800 Wrote: /builddir/build/SRPMS/gromacs-2024-1.fc41.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f41-build-50458170-6038590/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4g374tqa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4g374tqa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '46757193a00c4775bf9c274887fc42db', '-D', '/var/lib/mock/f41-build-50458170-6038590/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.4g374tqa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1706572800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Xbmhu2 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf gromacs-2024 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/gromacs-2024.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2024 + rm -rf /builddir/build/BUILD/gromacs-2024-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/gromacs-2024-SPECPARTS + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/regressiontests-2024.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/4064e8c5d9f69a879002a76224bba22f6ab2978e.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/4056.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + install -Dpm644 /builddir/build/SOURCES/manual-2024.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/fftpack src/external/tng_io src/external/lmfit src/external/muparser + sed -i 's/set(_timeout [0-9]*)/set(_timeout 9000)/' src/testutils/TestMacros.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.jMGMw5 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2024 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/62/exe ']' +++ /usr/bin/readlink /proc/62/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial + pushd serial ~/build/BUILD/gromacs-2024/serial ~/build/BUILD/gromacs-2024 + test -z '' + cp -al ../regressiontests-2024 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ echo -DGMX_X11=ON ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2024/serial/tests ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora41 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_X11=ON -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2024/serial/tests -DGMX_GPU=OpenCL -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.12.3", minimum required is "3.7") -- Selected GPU FFT library - clFFT -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Using default binary suffix: "" -- Using default library suffix: "" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel and AMD GPUs. -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd0c -- Detected build CPU family - 8 -- Detected build CPU model - 3 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Doxygen not found. Documentation targets will not be generated. -- Found Python: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "2.1.0") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (23.9s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH GMX_X11 INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j12 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j12 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024 -B/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake 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'/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o [ 1%] Generating release version information [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o [ 0%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o [ 1%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/parser.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/errhandler.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/abstractoption.cpp cd /builddir/build/BUILD/gromacs-2024 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.12 -D PROJECT_VERSION=2024-Fedora41 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora41 -P /builddir/build/BUILD/gromacs-2024/cmake/gmxGenerateVersionInfoWithoutGit.cmake cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/energyterm.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/accessors.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/gmx.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvar.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/gmx_arpack.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/mdrun.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/eigensolver.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/action.transpose.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 3%] Built target release-version-info [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -MF CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/enqueue.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/tmpi_malloc.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/atomic.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/lock.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/pthreads.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/alltoall.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/p2p_protocol.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 3%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/legacymodules.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF CMakeFiles/options.dir/abstractsection.cpp.o.d -o CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/abstractsection.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/barrier.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/p2p_send_recv.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/bcast.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/p2p_wait.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/collective.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 3%] Built target energyanalysis [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/basicoptions.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/behaviorcollection.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/profile.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/filenameoption.cpp [ 3%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/nonbonded_bench.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include 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Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/filenameoptionmanager.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 3%] Built target gmx_objlib [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include 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src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/options.cpp [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/matrix.cpp [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/sparsematrix.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/reduce.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/event.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/fft_binary_lookup.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.copy.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/reduce_fast.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/gather.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/scatter.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/group.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/tmpi_init.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsassigner.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 5%] Built target linearalgebra [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/topology.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 7%] Built target mdrun_objlib /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/list.cpp [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/output.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/type.cpp [ 7%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/scanner.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.gcn.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsection.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsvisitor.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvar_neuralnetworkcompute.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvaratoms.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/scan.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/numa_malloc.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/once.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 7%] Built target scanner [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/lifetime.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/md5sum.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 7%] Built target thread_mpi [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/plan.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/repo.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/stdafx.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/transform.cpp [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull_rotation.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pullcoordexpressionparser.cpp [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pullutil.cpp [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/transformationcoordinate.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/timeunitmanager.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/treesupport.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/stdafx.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_abf.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_alb.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_meta.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 7%] Built target pulling [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto 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'/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 7%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidegpuusage.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 7%] Built target options [ 7%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidesimulationworkload.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidegpuusage.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_alchlambda.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidesimulationworkload.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_angles.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_apath.cpp [ 7%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/findallgputasks.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_combination.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/reportgpuusage.cpp /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/checkpointhelper.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/reportgpuusage.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/compositesimulatorelement.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_coordnums.cpp [ 7%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/resourcedivision.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/checkpointhelper.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/taskassignment.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_distances.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include/gromacs/taskassignment/resourcedivision.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/resourcedivision.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/taskassignment.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/computeglobalselement.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_gpath.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_neuralnetwork.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/computeglobalselement.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/constraintelement.cpp [ 9%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvardeps.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvargrid.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/forceelement.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/modularsimulator.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarmodule.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparams.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/modularsimulator.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/mttk.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparse.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_io.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/nosehooverchains.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/propagator.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 11%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include 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-fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/pullelement.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_replicas.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 11%] Built target clFFT [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_system.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_tcl.cpp [ 11%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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/usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/referencetemperaturemanager.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/signallers.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript_commands.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/simulatoralgorithm.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/statepropagatordata.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/topologyholder.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/trajectoryelement.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/topologyholder.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript_commands_bias.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/simulatoralgorithm.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/statepropagatordata.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript_commands_colvar.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarvalue.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp 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src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/cstringutil.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -MF CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/programcontext.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -MF CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/smalloc.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp [ 27%] Building CXX object 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o 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31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/freeenergydispatch.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kerneldispatch.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/benchmark/bench_system.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/freeenergydispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/benchmark/bench_setup.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/gridset.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/grid.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp:36: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/gpu_data_mgmt.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kerneldispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_setup.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist_tuning.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_setup.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlistparams.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist_tuning.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlistparams.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlistset.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlistwork.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairsearch.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/prunekerneldispatch.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairsearch.h:56, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairsearch.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/prunekerneldispatch.cpp:40: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_prune_kernel.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/cmdlinehelpcontext.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_prune_kernel.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/cmdlinehelpmodule.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/atomdistribution.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include 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-funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/box.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/cellsizes.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/atomdistribution.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/box.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/collect.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/computemultibodycutoffs.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/distribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/cellsizes.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlb.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlbtiming.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/collect.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlbtiming.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlb.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_constraints.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/distribute.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_network.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_setup.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_specatomcomm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_constraints.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_vsite.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dump.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/ga2la.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_setup.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_specatomcomm.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_network.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_vsite.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/gpuhaloexchange_impl.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localatomset.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/gpuhaloexchange.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/gpuhaloexchange_impl.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localatomsetdata.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localatomsetmanager.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dump.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/mdsetup.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localtopology.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/nsgrid.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localtopologychecker.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/partition.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/redistribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/makebondedlinks.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/mdsetup.cpp:38: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/nsgrid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/reversetopology.cpp [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/utility.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/utility.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/utility.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/redistribute.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/3dtransforms.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/reversetopology.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/partition.cpp:82: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/pp2shift.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include 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-funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/insert_molecules.cpp [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/massrepartitioning.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/grompp.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/modules/scattering.cpp [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/modules/scatteringfactors.cpp [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/modules/select.cpp [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -MF CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/report_methods.cpp [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -MF CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/trjcat.cpp [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -MF CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/trjconv.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/pme_error.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/boxdeformation.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/tune_pme.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/broadcaststructs.cpp [ 74%] Building CXX object 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/compute_io.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/calc_verletbuf.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/enerdata_utils.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/constr.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/freeenergyparameters.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/gmx_omp_nthreads.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/force.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/groupcoord.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/gpuforcereduction.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/forcerec.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdatoms.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdebin_bar.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/md_support.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdgraph_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/lincs.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdatoms.cpp:42: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdoutf.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/perf_est.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/rbin.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/resethandler.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/perf_est.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/rf_util.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/resethandler.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/settle.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/shake.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/stat.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/sim_util.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/trajectory_writing.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/stat.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/update.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/update_vv.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/update_constrain_gpu.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/wall.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/vsite.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/wholemoleculetransform.cpp [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/qmmm/qmmm.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/disre.cpp [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/position_restraints.cpp [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/restcbt.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/manage_threading.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer.h:53, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_types.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_redistribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_grid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_load_balancing.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_only.cpp:73: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_solve.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_spline_work.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program_impl.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_spread.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp_comm_gpu.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_coordinate_receiver_gpu.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_force_sender_gpu.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/calcgrid.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/fft.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_timings.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_internal.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_grid.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/fft5d.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o -MF CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/gpu_3dfft_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_impl.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/clfftinitializer.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_impl.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_impl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream_manager.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/clfftinitializer.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream_manager.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/cpuinfo.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/detecthardware.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_common.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/hardwaretopology.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_caching.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_caching.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/printhardware.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/identifyavx512fmaunits.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_common.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/detecthardware.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/simd_support.cpp [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_ocl.cpp [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/legacymdrunoptions.cpp [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/legacysimulator.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_ocl.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/minimize.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/md.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/replicaexchange.cpp [ 90%] Building CXX object 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/rerun.cpp [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/runner.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/minimize.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/mimic.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/shellfc.cpp [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/simulationcontext.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/rerun.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/simulationinput.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/shellfc.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/runner.cpp:59: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/logging.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/tpi.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -MF CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/baseversion-gen.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer.h:53, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/state_propagator_data_gpu_impl_gpu.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/symrec.cpp [ 98%] Linking CXX shared library ../../lib/libgromacs.so cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgromacs.so.9 -o ../../lib/libgromacs.so.9.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.4 -lmuparser /usr/lib64/liblmfit.so /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.9.0.0 ../../lib/libgromacs.so.9 ../../lib/libgromacs.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 98%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/depend /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/share/template /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 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/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/build /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 98%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o [ 98%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o [ 98%] Linking CXX executable ../../bin/gmx [ 98%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o [ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/box.cpp.o [ 98%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o [ 98%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/resourceassignment.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/box.cpp.o -MF CMakeFiles/nblib.dir/box.cpp.o.d -o CMakeFiles/nblib.dir/box.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/box.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/context.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/context.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/context.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o -MF CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o.d -o CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/gmxcalculatorcpu.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2024/share/template/template.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/exceptions.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/gmxapi.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o -MF CMakeFiles/nblib.dir/interactions.cpp.o.d -o CMakeFiles/nblib.dir/interactions.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/interactions.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/md.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/md.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/md.cpp [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o -MF CMakeFiles/nblib.dir/molecules.cpp.o.d -o CMakeFiles/nblib.dir/molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/molecules.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o -MF CMakeFiles/nblib.dir/integrator.cpp.o.d -o CMakeFiles/nblib.dir/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/integrator.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib: ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/mdmodule.cpp [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/mdsignals.cpp [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/session.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/session.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/session.cpp [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o -MF CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o.d -o CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/nbnxmsetuphelpers.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/api/nblib/gmxcalculatorcpu.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/status.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/status.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/status.cpp [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/system.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/system.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/system.cpp [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/version.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/version.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/version.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target gmx [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/workflow.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/api/nblib/nbnxmsetuphelpers.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [100%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/tpr.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target template [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/listed_forces/transformations.cpp [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include 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/builddir/build/BUILD/gromacs-2024/api/nblib/listed_forces/conversions.cpp [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/listed_forces/convertGmxToNblib.cpp [100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include 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../../lib/libgmxapi.so cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmxapi.so.0 -o ../../lib/libgmxapi.so.0.4.0 CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o CMakeFiles/gmxapi.dir/cpp/context.cpp.o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o CMakeFiles/gmxapi.dir/cpp/md.cpp.o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o CMakeFiles/gmxapi.dir/cpp/session.cpp.o CMakeFiles/gmxapi.dir/cpp/status.cpp.o CMakeFiles/gmxapi.dir/cpp/system.cpp.o CMakeFiles/gmxapi.dir/cpp/version.cpp.o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib: ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgmxapi.so.0.4.0 ../../lib/libgmxapi.so.0 ../../lib/libgmxapi.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target gmxapi [100%] Linking CXX shared library ../../lib/libnblib_gmx.so cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libnblib_gmx.so.0 -o ../../lib/libnblib_gmx.so.0.1.0 CMakeFiles/nblib.dir/box.cpp.o CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o CMakeFiles/nblib.dir/integrator.cpp.o CMakeFiles/nblib.dir/interactions.cpp.o CMakeFiles/nblib.dir/molecules.cpp.o CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o CMakeFiles/nblib.dir/particlesequencer.cpp.o CMakeFiles/nblib.dir/particletype.cpp.o CMakeFiles/nblib.dir/simulationstate.cpp.o CMakeFiles/nblib.dir/topologyhelpers.cpp.o CMakeFiles/nblib.dir/topology.cpp.o CMakeFiles/nblib.dir/tpr.cpp.o CMakeFiles/nblib.dir/virials.cpp.o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o CMakeFiles/nblib.dir/util/setup.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib: -lm ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_symlink_library ../../lib/libnblib_gmx.so.0.1.0 ../../lib/libnblib_gmx.so.0 ../../lib/libnblib_gmx.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target nblib /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib/samples 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'/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Building CXX object api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o [100%] Building CXX object api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -MF CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d -o CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/samples/argon-forces-integration.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -MF CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d -o CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/samples/methane-water-integration.cpp [100%] Linking CXX executable ../../../bin/argon-forces-integration cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/argon-forces-integration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o" -o ../../../bin/argon-forces-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib [100%] Linking CXX executable ../../../bin/methane-water-integration cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/methane-water-integration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o" -o ../../../bin/methane-water-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target argon-forces-integration gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target methane-water-integration gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/CMakeFiles 0 ~/build/BUILD/gromacs-2024 + popd + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + mkdir -p mpich + pushd mpich ~/build/BUILD/gromacs-2024/mpich ~/build/BUILD/gromacs-2024 + test -z mpich + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n mpich ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib ++ test -z mpich ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora41 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DGMX_GPU=OpenCL -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.12.3", minimum required is "3.7") -- Selected GPU FFT library - clFFT -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") found components: CXX -- Using manually set binary suffix: "_mpich" -- Using manually set library suffix: "_mpich" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel and AMD GPUs. -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd0c -- Detected build CPU family - 8 -- Detected build CPU model - 3 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Doxygen not found. Documentation targets will not be generated. -- Found Python: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "2.1.0") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (25.5s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j12 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j12 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024 -B/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make 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'/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 1%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o [ 1%] Generating release version information [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/energyterm.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2024 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.12 -D PROJECT_VERSION=2024-Fedora41 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora41 -P /builddir/build/BUILD/gromacs-2024/cmake/gmxGenerateVersionInfoWithoutGit.cmake [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/accessors.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/errhandler.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/mdrun.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvar.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/eigensolver.cpp [ 1%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/abstractoption.cpp [ 1%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/parser.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/gmx.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/action.transpose.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/nonbonded_bench.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 1%] Built target release-version-info [ 1%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/legacymodules.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/tmpi_malloc.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/atomic.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/lock.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/pthreads.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 1%] Built target thread_mpi [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF CMakeFiles/options.dir/abstractsection.cpp.o.d -o CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/abstractsection.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/gmx_arpack.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/basicoptions.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 1%] Built target gmx_objlib [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/behaviorcollection.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/filenameoption.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 3%] Built target energyanalysis [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -MF CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/enqueue.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvar_neuralnetworkcompute.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvaratoms.cpp [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/matrix.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 3%] Built target mdrun_objlib [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/sparsematrix.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/fft_binary_lookup.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/filenameoptionmanager.cpp [ 3%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/scanner.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.copy.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/options.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 3%] Built target linearalgebra [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_abf.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_alb.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram_reweight_amd.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 3%] Built target scanner [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_meta.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsassigner.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.gcn.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/lifetime.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_alchlambda.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/md5sum.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/plan.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_angles.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsection.cpp /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/output.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsvisitor.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/timeunitmanager.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/treesupport.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_apath.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_combination.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_coordnums.cpp [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull.cpp [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull_rotation.cpp [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pullcoordexpressionparser.cpp [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pullutil.cpp [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/transformationcoordinate.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_distances.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 7%] Built target options [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/repo.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/stdafx.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_gpath.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/transform.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/stdafx.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_protein.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_rotations.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_volmaps.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvardeps.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvargrid.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 7%] Built target pulling [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarmodule.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparams.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparse.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_io.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_replicas.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_system.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_tcl.cpp /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidegpuusage.cpp [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidesimulationworkload.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidegpuusage.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_volmaps.cpp [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/findallgputasks.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidesimulationworkload.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvars_memstream.cpp [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/reportgpuusage.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/reportgpuusage.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/resourcedivision.cpp [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/taskassignment.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include/gromacs/taskassignment/resourcedivision.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/resourcedivision.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/usergpuids.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript_commands.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/taskassignment.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript_commands_bias.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript_commands_colvar.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvartypes.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/checkpointhelper.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/compositesimulatorelement.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 8%] Built target taskassignment [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/computeglobalselement.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarvalue.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/nr_jacobi.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/checkpointhelper.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/domdechelper.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/mttk.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/forceelement.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/nosehooverchains.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 10%] Built target clFFT [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/modularsimulator.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 10%] Built target colvars_objlib [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include 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/usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/propagator.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include 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-fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/pullelement.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -MF CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d -o CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/referencetemperaturemanager.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include 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CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/statepropagatordata.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/topologyholder.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/trajectoryelement.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/topologyholder.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/statepropagatordata.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/simulatoralgorithm.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 12%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 12%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2024/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o [ 12%] Building CXX object 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/cstringutil.cpp [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/datafilefinder.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include 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-fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp [ 31%] Building CXX object 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp [ 33%] Building CXX 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 35%] 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/exclusionchecker.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/freeenergydispatch.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/grid.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/freeenergydispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/benchmark/bench_system.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/benchmark/bench_setup.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/grid.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/gridset.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp:36: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/gpu_data_mgmt.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kerneldispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_setup.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist_tuning.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_setup.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlistparams.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist_tuning.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlistparams.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/prunekerneldispatch.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_prune_kernel.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairsearch.h:56, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairsearch.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/prunekerneldispatch.cpp:40: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/cmdlinehelpcontext.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_prune_kernel.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/cmdlinehelpmodule.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/cellsizes.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/box.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/atomdistribution.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/distribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/cellsizes.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlb.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlbtiming.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlbtiming.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/collect.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_constraints.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlb.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/distribute.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_network.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_constraints.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_vsite.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dump.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_specatomcomm.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/ga2la.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_setup.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_network.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_vsite.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localatomset.cpp cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/gpuhaloexchange_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dump.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/gpuhaloexchange.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/gpuhaloexchange_impl.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localtopologychecker.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/makebondedlinks.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/mdsetup.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localtopology.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localtopologychecker.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/nsgrid.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/makebondedlinks.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/partition.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/redistribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/mdsetup.cpp:38: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/reversetopology.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/nsgrid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/utility.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/reversetopology.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/redistribute.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/utility.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/utility.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/partition.cpp:82: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/3dtransforms.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/coordinatetransformation.cpp [ 45%] Building CXX object 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/gausstransform.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/hizzie.cpp [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/insert_molecules.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/grompp.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -MF CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/trjconv.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/pme_error.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/nrnb.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/compute_io.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/calc_verletbuf.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/enerdata_utils.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/constr.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/force.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/groupcoord.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/gpuforcereduction.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/lincs.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/forcerec.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdebin_bar.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/lincs.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdgraph_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/md_support.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdatoms.cpp:42: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/rbin.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/perf_est.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/rf_util.cpp [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/settle.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/resethandler.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/stat.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/sim_util.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/trajectory_writing.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/stat.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/update_vv.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/wall.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/vsite.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/qmmm/qmmm.cpp [ 84%] Building CXX object 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/qmmm/qmmm.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces_gpu.h:52, from 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/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/restcbt.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/manage_threading.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer.h:53, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_types.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/calculate_spline_moduli.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_redistribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_grid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_load_balancing.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_only.cpp:73: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program_impl.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_spread.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp_comm_gpu.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_coordinate_receiver_gpu.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_force_sender_gpu.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/calcgrid.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/fft.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_grid.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_internal.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_timings.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/parallel_3dfft.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/clfftinitializer.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_impl.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_impl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream_manager.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/clfftinitializer.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/hostallocator.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream_manager.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/detecthardware.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_common.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/hardwaretopology.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_caching.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_caching.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/printhardware.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_common.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/identifyavx512fmaunits.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/simd_support.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/detecthardware.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/legacymdrunoptions.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/md.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_ocl.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/mimic.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/simulationcontext.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/mimic.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/minimize.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/rerun.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/simulationinput.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/runner.cpp:59: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/shellfc.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/logging.cpp [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/mdmodulesnotifiers.cpp [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/multisim.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/tpi.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/checkpoint.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from 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modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o options/CMakeFiles/options.dir/abstractoption.cpp.o options/CMakeFiles/options.dir/abstractsection.cpp.o options/CMakeFiles/options.dir/basicoptions.cpp.o options/CMakeFiles/options.dir/behaviorcollection.cpp.o options/CMakeFiles/options.dir/filenameoption.cpp.o options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o options/CMakeFiles/options.dir/options.cpp.o options/CMakeFiles/options.dir/optionsassigner.cpp.o options/CMakeFiles/options.dir/optionsection.cpp.o options/CMakeFiles/options.dir/optionsvisitor.cpp.o options/CMakeFiles/options.dir/timeunitmanager.cpp.o options/CMakeFiles/options.dir/treesupport.cpp.o pulling/CMakeFiles/pulling.dir/output.cpp.o pulling/CMakeFiles/pulling.dir/pull.cpp.o pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mpich.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/share/template /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o [100%] Linking CXX executable ../../bin/gmx_mpich cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/api/legacy/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2024/share/template/template.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_mpich -Wl,-rpath,/usr/lib64/mpich/lib: ../../lib/libgromacs_mpich.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/mpich/lib ../../lib/libgromacs_mpich.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/mpich/redhat-linux-build/CMakeFiles 0 ~/build/BUILD/gromacs-2024 + popd + test -n mpich + module unload mpi/mpich-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + mkdir -p openmpi + pushd openmpi ~/build/BUILD/gromacs-2024/openmpi ~/build/BUILD/gromacs-2024 + test -z openmpi + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n openmpi ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib ++ test -z openmpi ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora41 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DGMX_GPU=OpenCL -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.12.3", minimum required is "3.7") -- Selected GPU FFT library - clFFT -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: CXX -- GROMACS library will use OpenMPI 5.0.2 -- Using manually set binary suffix: "_openmpi" -- Using manually set library suffix: "_openmpi" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel and AMD GPUs. -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd0c -- Detected build CPU family - 8 -- Detected build CPU model - 3 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Doxygen not found. Documentation targets will not be generated. -- Found Python: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "2.1.0") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (25.4s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j12 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j12 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024 -B/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/errhandler.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src 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/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/parser.cpp cd 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/tmpi_malloc.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/atomic.cpp [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/eigensolver.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/mdrun.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 1%] Built target release-version-info [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/nonbonded_bench.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src 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src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/basicoptions.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias.cpp gmake[2]: Leaving directory 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_alb.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 1%] Built target mdrun_objlib [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/action.transpose.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -MF CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/enqueue.cpp [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/matrix.cpp [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/fft_binary_lookup.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.copy.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_meta.cpp [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/sparsematrix.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 1%] Built target linearalgebra [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_alchlambda.cpp [ 1%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/scanner.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_angles.cpp /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 1%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/output.cpp [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 1%] Built target scanner [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.gcn.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o -MF CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/lifetime.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.cpp.o -MF CMakeFiles/clFFT.dir/library/md5sum.cpp.o.d -o CMakeFiles/clFFT.dir/library/md5sum.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/md5sum.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o -MF CMakeFiles/clFFT.dir/library/plan.cpp.o.d -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/plan.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o -MF CMakeFiles/clFFT.dir/library/repo.cpp.o.d -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/repo.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 3%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/behaviorcollection.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/stdafx.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o -MF CMakeFiles/clFFT.dir/library/transform.cpp.o.d -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/transform.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/filenameoption.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_apath.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_combination.cpp [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull_rotation.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -MF CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/statTimer/stdafx.cpp [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pullcoordexpressionparser.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/filenameoptionmanager.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/options.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_coordnums.cpp [ 7%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pullutil.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsassigner.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_distances.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_gpath.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsection.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsvisitor.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_protein.cpp [ 7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/transformationcoordinate.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparams.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 7%] Built target pulling [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [ 7%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidesimulationworkload.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidegpuusage.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 7%] Built target options [ 7%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/findallgputasks.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidesimulationworkload.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy.cpp [ 7%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/reportgpuusage.cpp [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/checkpointhelper.cpp [ 7%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/resourcedivision.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/reportgpuusage.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include/gromacs/taskassignment/resourcedivision.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/resourcedivision.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_io.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/checkpointhelper.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_replicas.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_system.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_tcl.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_volmaps.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/compositesimulatorelement.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/computeglobalselement.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvars_memstream.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript.cpp [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/taskassignment.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/constraintelement.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/computeglobalselement.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/taskassignment.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 10%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/usergpuids.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript_commands.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/expandedensembleelement.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 10%] Built target taskassignment [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/modularsimulator.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces_gpu.h:52, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/forceelement.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/mttk.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/nosehooverchains.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/modularsimulator.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvartypes.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/propagator.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/pullelement.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/signallers.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include 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-fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/statepropagatordata.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/topologyholder.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 12%] Built target clFFT [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarvalue.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/statepropagatordata.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/simulatoralgorithm.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/topologyholder.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include 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-std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/trajectoryelement.cpp [ 12%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp [ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/nr_jacobi.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 12%] Built target colvars_objlib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 12%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 12%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2024/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o [ 14%] Building 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/baseversion.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/alignedallocator.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/booltype.cpp [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_kernel.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include 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cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o [ 36%] Building CXX object 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kerneldispatch.cpp [ 38%] Building CXX object 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/freeenergydispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/benchmark/bench_system.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/gridset.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/benchmark/bench_setup.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/grid.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp:36: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/gpu_data_mgmt.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kerneldispatch.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_setup.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist.cpp [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist_tuning.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlistparams.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_setup.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlistparams.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairlist_tuning.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/prunekerneldispatch.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_prune_kernel.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairsearch.h:56, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/pairsearch.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/prunekerneldispatch.cpp:40: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_gpu_buffer_ops_internal_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/opencl/nbnxm_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/cmdlinehelpcontext.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_data_mgmt.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/cmdlinehelpmodule.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/simd_prune_kernel.cpp:39: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_jit_support.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/cellsizes.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/box.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/atomdistribution.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/collect.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/computemultibodycutoffs.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/distribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/cellsizes.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlb.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlbtiming.cpp [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/collect.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlbtiming.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dlb.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.cpp:37: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_constraints.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/distribute.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_network.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_setup.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_constraints.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_specatomcomm.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_vsite.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dump.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_setup.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/ga2la.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_specatomcomm.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_network.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_vsite.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/gpuhaloexchange_impl.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localatomset.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/gpuhaloexchange.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/gpuhaloexchange_impl.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/dump.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/makebondedlinks.cpp [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/mdsetup.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localtopology.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/nsgrid.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/makebondedlinks.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/partition.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/localtopologychecker.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/redistribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/nsgrid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/mdsetup.cpp:38: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/reversetopology.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/utility.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/utility.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/utility.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/redistribute.cpp:60: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/partition.cpp:82: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/3dtransforms.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/reversetopology.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/coordinatetransformation.cpp [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/hizzie.cpp [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/insert_molecules.cpp [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/grompp.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -MF CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/trjconv.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/pme_error.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/nrnb.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/checkpointhandler.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/compute_io.cpp [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/constr.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/calc_verletbuf.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/enerdata_utils.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/constr.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/gmx_omp_nthreads.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/force.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/groupcoord.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/gpuforcereduction.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/lincs.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/forcerec.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdgraph_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/lincs.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdoutf.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/mdatoms.cpp:42: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/md_support.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/membed.cpp [ 78%] Building CXX object 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/perf_est.cpp [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/rbin.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_geometry.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/perf_est.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/rf_util.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/resethandler.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/stat.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/sim_util.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/trajectory_writing.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/stat.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/updategroups.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/wall.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/vsite.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/colvars/colvarsMDModule.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/qmmm/qmmm.cpp:50: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/listed_forces_gpu.h:52, from 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/position_restraints.cpp In file included from /usr/include/CL/cl.h:20, from 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_gpu_buffer_ops.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer.h:53, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/opencl/nbnxm_ocl_types.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_data_mgmt.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream.h:56, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm_gpu_buffer_ops.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_only.cpp [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_redistribute.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_only.cpp:73: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_load_balancing.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_grid.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_spread.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program_impl.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_spread.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp_comm_gpu.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_coordinate_receiver_gpu.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_ocl_stubs.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_force_sender_gpu.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_program_impl_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_internal.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_timings.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_timings.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/calcgrid.cpp [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/fft.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_grid.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_ocl_stubs.cpp:46: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_internal.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_internal.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme_gpu_timings.cpp:48: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/gpu_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_ocl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream_manager.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_impl.h:46, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft_impl.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/clfftinitializer.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream_manager.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/hostallocator.cpp [ 89%] Building CXX object 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from 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src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_common.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_stream_ocl.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/hardwaretopology.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_caching.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_caching.cpp:45: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.cpp:41: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/printhardware.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_common.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/identifyavx512fmaunits.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/detecthardware.cpp:63: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/simd_support.cpp [ 91%] Building CXX object 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/device_management_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_ocl.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/legacysimulator.cpp [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/md.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/oclutils.h:45, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/ocl_compiler.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_management_ocl.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/mimic.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/shellfc.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/mimic.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/minimize.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/simulationcontext.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/rerun.cpp:55: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/simulationinput.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/shellfc.cpp:47: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/runner.cpp:59: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include 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-isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/simulationinputhandle.cpp [ 92%] 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/logging.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/tpi.cpp:54: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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/builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/checkpoint.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from 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modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o options/CMakeFiles/options.dir/abstractoption.cpp.o options/CMakeFiles/options.dir/abstractsection.cpp.o options/CMakeFiles/options.dir/basicoptions.cpp.o options/CMakeFiles/options.dir/behaviorcollection.cpp.o options/CMakeFiles/options.dir/filenameoption.cpp.o options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o options/CMakeFiles/options.dir/options.cpp.o options/CMakeFiles/options.dir/optionsassigner.cpp.o options/CMakeFiles/options.dir/optionsection.cpp.o options/CMakeFiles/options.dir/optionsvisitor.cpp.o options/CMakeFiles/options.dir/timeunitmanager.cpp.o options/CMakeFiles/options.dir/treesupport.cpp.o pulling/CMakeFiles/pulling.dir/output.cpp.o pulling/CMakeFiles/pulling.dir/pull.cpp.o pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_openmpi.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/share/template /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [100%] Linking CXX executable ../../bin/gmx_openmpi [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/api/legacy/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2024/share/template/template.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_openmpi -Wl,-rpath,/usr/lib64/openmpi/lib: ../../lib/libgromacs_openmpi.a /usr/lib64/openmpi/lib/libmpi.so -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/openmpi/lib ../../lib/libgromacs_openmpi.a -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io -lmuparser /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/openmpi/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2024 + test -n openmpi + module unload mpi/openmpi-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial_d + pushd serial_d ~/build/BUILD/gromacs-2024/serial_d ~/build/BUILD/gromacs-2024 + test -z '' + cp -al ../regressiontests-2024 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ echo -DGMX_X11=ON ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2024/serial_d/tests ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora41 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_X11=ON -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2024/serial_d/tests -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.12.3", minimum required is "3.7") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd0c -- Detected build CPU family - 8 -- Detected build CPU model - 3 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Doxygen not found. Documentation targets will not be generated. -- Found Python: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (23.5s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH GMX_X11 INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j12 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j12 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024 -B/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/selection /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/options /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/programs/CMakeFiles/gmx_objlib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2024 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.12 -D PROJECT_VERSION=2024-Fedora41 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora41 -P /builddir/build/BUILD/gromacs-2024/cmake/gmxGenerateVersionInfoWithoutGit.cmake [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/scanner.cpp [ 0%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/eigensolver.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/abstractoption.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/gmx.cpp [ 0%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvar.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/errhandler.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/parser.cpp [ 0%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o [ 0%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/nonbonded_bench.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/energyterm.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/mdrun.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvar_neuralnetworkcompute.cpp [ 0%] Built target release-version-info [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF 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-fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvaratoms.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/atomic.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/lock.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/pthreads.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/alltoall.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/p2p_protocol.cpp [ 0%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/legacymodules.cpp [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include 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CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/gmx_arpack.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/p2p_send_recv.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/bcast.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/profile.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/comm.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/reduce.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/event.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/reduce_fast.cpp [ 1%] Built target mdrun_objlib [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include 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Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/scatter.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/group.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/tmpi_init.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/topology.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/list.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/basicoptions.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 1%] Built target gmx_objlib [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd 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-I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/matrix.cpp [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/sparsematrix.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/behaviorcollection.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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-I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/options.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_abf.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_alb.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 5%] Built target thread_mpi [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 5%] Built target linearalgebra [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_meta.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 5%] Built target scanner /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 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-I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/output.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_angles.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_apath.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_combination.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_coordnums.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_distances.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_gpath.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 6%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull_rotation.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_protein.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_rotations.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_volmaps.cpp [ 6%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pullcoordexpressionparser.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvardeps.cpp [ 6%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsassigner.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvargrid.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarmodule.cpp [ 6%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pullutil.cpp [ 6%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsection.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparams.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparse.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy.cpp [ 6%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsvisitor.cpp [ 6%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/timeunitmanager.cpp [ 6%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/transformationcoordinate.cpp [ 6%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/treesupport.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_io.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_replicas.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_system.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_tcl.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_volmaps.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvars_memstream.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o [ 8%] Built target pulling cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript_commands.cpp /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/decidesimulationworkload.cpp [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/findallgputasks.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 8%] Built target options [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/checkpointhelper.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvartypes.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarvalue.cpp [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o -MF CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d -o CMakeFiles/taskassignment.dir/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/taskassignment.cpp [ 8%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o -MF CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d -o CMakeFiles/taskassignment.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/usergpuids.cpp [ 8%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/forceelement.cpp [ 10%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/datafilefinder.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include 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CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/errorformat.cpp [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ 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/usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/essentialdynamics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/imd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrun/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mimic/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/random/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/selection/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/statistics/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/swap/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tables/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/tools/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectory/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/compat/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp [ 36%] Building CXX object 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp [ 36%] Building CXX object 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-isystem /builddir/build/BUILD/gromacs-2024/src/external/colvars -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/sm_simple.cpp [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/symrec.cpp [ 96%] Linking CXX shared library ../../lib/libgromacs_d.so cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgromacs_d.so.9 -o ../../lib/libgromacs_d.so.9.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lflexiblas -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.4 -lmuparser /usr/lib64/liblmfit.so /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.9.0.0 ../../lib/libgromacs_d.so.9 ../../lib/libgromacs_d.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 96%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/depend /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/share/template /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/gmxapi /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/build /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/box.cpp.o [ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o [ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o [ 96%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o [ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o [ 96%] Linking CXX executable ../../bin/gmx_d [ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o [ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o [ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o [ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/resourceassignment.cpp cd 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2024/share/template/template.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto 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/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/context.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/context.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/context.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o -MF CMakeFiles/nblib.dir/interactions.cpp.o.d -o CMakeFiles/nblib.dir/interactions.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/interactions.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/exceptions.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/gmxapi.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o -MF CMakeFiles/nblib.dir/molecules.cpp.o.d -o CMakeFiles/nblib.dir/molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/molecules.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_d -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/lib: ../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/md.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/md.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/md.cpp [ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/mdmodule.cpp [ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/mdsignals.cpp [ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/session.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/session.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/session.cpp [ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o -MF CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o.d -o CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/nbnxmsetuphelpers.cpp [ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/status.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/status.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/status.cpp [ 96%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/workflow.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/include 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -MF CMakeFiles/nblib.dir/util/setup.cpp.o.d -o CMakeFiles/nblib.dir/util/setup.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/util/setup.cpp [ 98%] Linking CXX shared library ../../lib/libgmxapi_d.so cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmxapi_d.so.0 -o ../../lib/libgmxapi_d.so.0.4.0 CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o CMakeFiles/gmxapi.dir/cpp/context.cpp.o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o CMakeFiles/gmxapi.dir/cpp/md.cpp.o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o CMakeFiles/gmxapi.dir/cpp/session.cpp.o CMakeFiles/gmxapi.dir/cpp/status.cpp.o CMakeFiles/gmxapi.dir/cpp/system.cpp.o CMakeFiles/gmxapi.dir/cpp/version.cpp.o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/lib: ../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/gmxapi && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgmxapi_d.so.0.4.0 ../../lib/libgmxapi_d.so.0 ../../lib/libgmxapi_d.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 98%] Built target gmxapi [ 98%] Linking CXX shared library ../../lib/libnblib_gmx.so cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libnblib_gmx.so.0 -o ../../lib/libnblib_gmx.so.0.1.0 CMakeFiles/nblib.dir/box.cpp.o CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o CMakeFiles/nblib.dir/integrator.cpp.o CMakeFiles/nblib.dir/interactions.cpp.o CMakeFiles/nblib.dir/molecules.cpp.o CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o CMakeFiles/nblib.dir/particlesequencer.cpp.o CMakeFiles/nblib.dir/particletype.cpp.o CMakeFiles/nblib.dir/simulationstate.cpp.o CMakeFiles/nblib.dir/topologyhelpers.cpp.o CMakeFiles/nblib.dir/topology.cpp.o CMakeFiles/nblib.dir/tpr.cpp.o CMakeFiles/nblib.dir/virials.cpp.o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o CMakeFiles/nblib.dir/util/setup.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/lib: -lm ../../lib/libgromacs_d.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib && /usr/bin/cmake -E cmake_symlink_library ../../lib/libnblib_gmx.so.0.1.0 ../../lib/libnblib_gmx.so.0 ../../lib/libnblib_gmx.so gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 98%] Built target nblib /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib/samples /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib/samples /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [ 98%] Building CXX object api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o [ 98%] Building CXX object api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -MF CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d -o CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/samples/argon-forces-integration.cpp cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/legacy/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -MF CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d -o CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/samples/methane-water-integration.cpp [100%] Linking CXX executable ../../../bin/argon-forces-integration cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/argon-forces-integration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o" -o ../../../bin/argon-forces-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/lib [100%] Linking CXX executable ../../../bin/methane-water-integration cd /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/methane-water-integration.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o" -o ../../../bin/methane-water-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/lib gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [100%] Built target argon-forces-integration gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' [100%] Built target methane-water-integration gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/serial_d/redhat-linux-build/CMakeFiles 0 ~/build/BUILD/gromacs-2024 + popd + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + mkdir -p mpich_d ~/build/BUILD/gromacs-2024/mpich_d ~/build/BUILD/gromacs-2024 + pushd mpich_d + test -z mpich + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n mpich ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib ++ test -z mpich ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora41 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.12.3", minimum required is "3.7") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") found components: CXX -- Using manually set binary suffix: "_mpich_d" -- Using manually set library suffix: "_mpich_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd0c -- Detected build CPU family - 8 -- Detected build CPU model - 3 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Doxygen not found. Documentation targets will not be generated. -- Found Python: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (24.2s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j12 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j12 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024 -B/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs 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src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o [ 0%] Generating release version information [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o [ 0%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o [ 0%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o [ 0%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o [ 0%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/errhandler.cpp cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/eigensolver.cpp cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/parser.cpp cd /builddir/build/BUILD/gromacs-2024 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.12 -D PROJECT_VERSION=2024-Fedora41 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora41 -P /builddir/build/BUILD/gromacs-2024/cmake/gmxGenerateVersionInfoWithoutGit.cmake cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvar.cpp cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/tmpi_malloc.cpp cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/energyterm.cpp cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/gmx.cpp cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/abstractoption.cpp cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/mdrun.cpp cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/atomic.cpp cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/scanner.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 0%] Built target release-version-info [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF CMakeFiles/options.dir/abstractsection.cpp.o.d -o CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/abstractsection.cpp [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/lock.cpp [ 0%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/pthreads.cpp [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/nonbonded_bench.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 1%] Built target thread_mpi [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/gmx_arpack.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/basicoptions.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvar_neuralnetworkcompute.cpp [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvaratoms.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 1%] Built target gmx_objlib [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 1%] Built target energyanalysis [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_abf.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_alb.cpp [ 1%] Built target mdrun_objlib [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram.cpp [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/sparsematrix.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_meta.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 1%] Built target linearalgebra [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_alchlambda.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_angles.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_apath.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 3%] Built target scanner /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 3%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/output.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_combination.cpp [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/behaviorcollection.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_coordnums.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ [ 3%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/filenameoption.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_distances.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_gpath.cpp [ 3%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull.cpp [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull_rotation.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_neuralnetwork.cpp [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pullcoordexpressionparser.cpp [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pullutil.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_protein.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_rotations.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/filenameoptionmanager.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_volmaps.cpp [ 5%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/transformationcoordinate.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvardeps.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/options.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvargrid.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarmodule.cpp [ 5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsassigner.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparams.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparse.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_io.cpp [ 6%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsection.cpp [ 6%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsvisitor.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_replicas.cpp [ 6%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/timeunitmanager.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_system.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_tcl.cpp [ 6%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/treesupport.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_volmaps.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 6%] Built target pulling [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/findallgputasks.cpp [ 6%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/reportgpuusage.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarscript_commands_colvar.cpp [ 6%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 10%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [ 10%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/VersionInfo.cmake -D 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/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2024/src/include 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modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o options/CMakeFiles/options.dir/abstractoption.cpp.o options/CMakeFiles/options.dir/abstractsection.cpp.o options/CMakeFiles/options.dir/basicoptions.cpp.o options/CMakeFiles/options.dir/behaviorcollection.cpp.o options/CMakeFiles/options.dir/filenameoption.cpp.o options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o options/CMakeFiles/options.dir/options.cpp.o options/CMakeFiles/options.dir/optionsassigner.cpp.o options/CMakeFiles/options.dir/optionsection.cpp.o options/CMakeFiles/options.dir/optionsvisitor.cpp.o options/CMakeFiles/options.dir/timeunitmanager.cpp.o options/CMakeFiles/options.dir/treesupport.cpp.o pulling/CMakeFiles/pulling.dir/output.cpp.o pulling/CMakeFiles/pulling.dir/pull.cpp.o pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mpich_d.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/share/template /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [100%] Linking CXX executable ../../bin/gmx_mpich_d [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/api/legacy/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2024/share/template/template.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_mpich_d -Wl,-rpath,/usr/lib64/mpich/lib: ../../lib/libgromacs_mpich_d.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/mpich/lib ../../lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/mpich_d/redhat-linux-build/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2024 + test -n mpich + module unload mpi/mpich-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + mkdir -p openmpi_d + pushd openmpi_d ~/build/BUILD/gromacs-2024/openmpi_d ~/build/BUILD/gromacs-2024 + test -z openmpi + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n openmpi ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib ++ test -z openmpi ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora41 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.12.3", minimum required is "3.7") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: CXX -- GROMACS library will use OpenMPI 5.0.2 -- Using manually set binary suffix: "_openmpi_d" -- Using manually set library suffix: "_openmpi_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd0c -- Detected build CPU family - 8 -- Detected build CPU model - 3 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Doxygen not found. Documentation targets will not be generated. -- Found Python: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "8.2.2", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Configuring done (24.4s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP GMX_DSSP_PROGRAM_PATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j12 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j12 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024 -B/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f 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'/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [ 0%] Building CXX object src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o [ 0%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o [ 0%] Generating release version information [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o [ 0%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o [ 0%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/gmx_arpack.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/scanner.cpp cd /builddir/build/BUILD/gromacs-2024 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.12 -D PROJECT_VERSION=2024-Fedora41 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora41 -P /builddir/build/BUILD/gromacs-2024/cmake/gmxGenerateVersionInfoWithoutGit.cmake cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/abstractoption.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/energyanalysis && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-cast-function-type-strict -MD -MT src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/energyterm.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvar.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/mdrun.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/parser.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/errhandler.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/nonbonded_bench.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/eigensolver.cpp [ 1%] Building CXX object src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/commandline/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/gmx.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [ 1%] Built target release-version-info [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/src/pthreads.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [ 1%] Built target thread_mpi [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvar_neuralnetworkcompute.cpp [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/matrix.cpp [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF CMakeFiles/options.dir/abstractsection.cpp.o.d -o CMakeFiles/options.dir/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/abstractsection.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/basicoptions.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [ 1%] Built target gmx_objlib [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/behaviorcollection.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [ 1%] Built target energyanalysis [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c 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-I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/filenameoptionmanager.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [ 1%] Built target mdrun_objlib [ 1%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer 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[ 1%] Built target linearalgebra [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsassigner.cpp /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling 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-I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/optionsection.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_histogram_reweight_amd.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/timeunitmanager.cpp [ 1%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/options/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o -MF CMakeFiles/options.dir/treesupport.cpp.o.d -o CMakeFiles/options.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/treesupport.cpp [ 1%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/pull.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [ 1%] Built target scanner [ 3%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/transformationcoordinate.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto 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-DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c 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CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_angles.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF 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src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_combination.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_distances.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_gpath.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [ 5%] Built target options [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_neuralnetwork.cpp In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:10: In member function ‘std::__cxx11::basic_string, std::allocator >::size() const’, inlined from ‘std::__cxx11::basic_string, std::allocator >::assign(char const*)’ at /usr/include/c++/14/bits/basic_string.h:1695:19, inlined from ‘std::__cxx11::basic_string, std::allocator >::operator=(char const*)’ at /usr/include/c++/14/bits/basic_string.h:829:28, inlined from ‘colvarbias_restraint::colvarbias_restraint(char const*)’ at /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarbias_restraint.cpp:24:19: /usr/include/c++/14/bits/basic_string.h:1077:16: warning: ‘MEM[(const struct basic_string *)this_3(D) + 80B]._M_string_length’ is used uninitialized [-Wuninitialized] 1077 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_protein.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_rotations.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [ 5%] Built target pulling [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarcomp_volmaps.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvardeps.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvargrid.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarmodule.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparams.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarparse.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects 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/usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/external/colvars/colvarproxy_replicas.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o cd 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build gmake[2]: 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CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/findallgputasks.cpp [ 6%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/reportgpuusage.cpp [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include 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-std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/constraintelement.cpp [ 6%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator/domdechelper.cpp [ 6%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o pulling/CMakeFiles/pulling.dir/pullutil.cpp.o pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o /usr/bin/ranlib ../../lib/libgromacs_openmpi_d.a gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/share/template /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/share/template /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/share/template/CMakeFiles/template.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [100%] Linking CXX executable ../../bin/gmx_openmpi_d [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/share/template && /usr/bin/g++ -DGMX_DOUBLE=1 -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/api/legacy/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2024/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fopenmp -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2024/share/template/template.cpp cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx_openmpi_d -Wl,-rpath,/usr/lib64/openmpi/lib: ../../lib/libgromacs_openmpi_d.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/usr/lib64/openmpi/lib ../../lib/libgromacs_openmpi_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io -lmuparser /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.4 /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [100%] Built target template /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp: In function ‘_gmx_selvalue_reserve’: /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/selvalue.cpp:100:47: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 100 | val->u.p = new gmx_ana_pos_t[n]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' [100%] Built target gmx gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/openmpi_d/redhat-linux-build/CMakeFiles 0 ~/build/BUILD/gromacs-2024 + popd + test -n openmpi + module unload mpi/openmpi-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.4ddjcZ + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 ++ dirname /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2024 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/40670/exe ']' +++ /usr/bin/readlink /proc/40670/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ~/build/BUILD/gromacs-2024/serial ~/build/BUILD/gromacs-2024 ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial + DESTDIR=/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/README -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/template.cpp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/Makefile.pkg -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/README.tutor -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/README_FreeEnergyModifications.txt -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/nsfactor.dat -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/bonds.dlg -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/ffG45a3.itp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/ffoplsaa.itp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/atom_nom.tbl -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Installing: 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/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat -- Installing: 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/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gmxapi/md/mdmodule.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gmxapi/md/mdsignals.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gmxapi/compat -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gmxapi/compat/mdparams.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gmxapi/compat/tpr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gmxapi/status.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gmxapi/version.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gmxapi/mpi/resourceassignment.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libnblib_gmx.so.0.1.0 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libnblib_gmx.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libnblib_gmx.so.0.1.0" to "" -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libnblib_gmx.so -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/nblib.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/integrator.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/molecules.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/util -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/util/util.hpp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/util/traits.hpp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/util/setup.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/particletype.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/particlesequencer.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/basicdefinitions.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/gmxcalculatorcpu.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/vector.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/simulationstate.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/nbnxmsetuphelpers.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/interactions.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/exception.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/box.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/listed_forces -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/listed_forces/definitions.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/listed_forces/bondtypes.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/listed_forces/calculator.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/topology.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/kerneloptions.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/tpr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libgromacs.so.9.0.0 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libgromacs.so.9 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libgromacs.so -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/pkgconfig/libgromacs.pc -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/cmake/gromacs/libgromacs.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/cmake/gromacs/libgromacs-release.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/cmake/gromacs/gromacs-config.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/cmake/gromacs/gromacs-config-version.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/cmake/gromacs/gromacs-hints.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_calculate_splines.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/bin/gmx -- Set non-toolchain portion of runtime path of "/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/bin/gmx" to "" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/bin -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/bin/gmx-completion-gmx.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-msd.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pdb2gmx.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjorder.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hbond-legacy.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-convert-trj.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-awh.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rmsf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gangle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-editconf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mindist.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmens.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rama.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-tcaf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjcat.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-report-methods.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dielectric.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dump.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-potential.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-confrms.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmr.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-h2order.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sans-legacy.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dyecoupl.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dipoles.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-distance.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dssp.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-eneconv.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-helix.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-clustsize.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-tune_pme.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjconv.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmeig.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-help.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-extract-cluster.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-current.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-bundle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-scattering.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sigeps.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-densmap.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dos.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mdrun.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-traj.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-principal.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-xpm2ps.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-freevolume.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rdf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmtraj.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-insert-molecules.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-cluster.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-energy.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-wheel.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-select.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-wham.1 -- Installing: 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/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-densorder.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gyrate-legacy.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotacf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-order.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-spol.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sham.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-chi.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-check.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-saltbr.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-saxs-legacy.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hydorder.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-helixorient.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-covar.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pairdist.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gyrate.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-anaeig.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-filter.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hbond.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genconf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-angle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-make_edi.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-solvate.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pme_error.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-disre.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genion.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-convert-tpr.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rms.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-density.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-grompp.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-x2top.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-lie.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-bar.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genrestr.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mk_angndx.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sorient.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotmat.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trajectory.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sasa.1 + popd ~/build/BUILD/gromacs-2024 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 ~/build/BUILD/gromacs-2024/mpich ~/build/BUILD/gromacs-2024 + pushd mpich + DESTDIR=/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/README -- Up-to-date: 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Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: 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/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-disre.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sasa.1 + popd ~/build/BUILD/gromacs-2024 + test -n mpich + module unload mpi/mpich-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + pushd openmpi ~/build/BUILD/gromacs-2024/openmpi ~/build/BUILD/gromacs-2024 + DESTDIR=/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/nsfactor.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/bonds.dlg -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/ffG45a3.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/ffoplsaa.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/atom_nom.tbl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/spce.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/popc.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Up-to-date: 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/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/mdtypes -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/mdtypes/inputrec.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/mdtypes/md_enums.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/libgromacs_export.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/mdrun/simulationinputhandle.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_calculate_splines.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/openmpi/bin/gmx_openmpi -- Set non-toolchain portion of runtime path of "/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/openmpi/bin/gmx_openmpi" to "" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/openmpi/bin -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/openmpi/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi.bash -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-disre.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sasa.1 + popd ~/build/BUILD/gromacs-2024 + test -n openmpi + module unload mpi/openmpi-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 ~/build/BUILD/gromacs-2024/serial_d ~/build/BUILD/gromacs-2024 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial_d + DESTDIR=/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: 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Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gmxapi/mpi/resourceassignment.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libnblib_gmx.so.0.1.0 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libnblib_gmx.so.0 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libnblib_gmx.so.0.1.0" to "" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/libnblib_gmx.so -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/nblib.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/integrator.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/nblib/molecules.h -- Up-to-date: 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/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/bin/gmx-completion-gmx_d.bash -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: 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Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-check.1 -- Up-to-date: 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/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-disre.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sasa.1 + popd ~/build/BUILD/gromacs-2024 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 ~/build/BUILD/gromacs-2024/mpich_d ~/build/BUILD/gromacs-2024 + pushd mpich_d + DESTDIR=/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/nsfactor.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/bonds.dlg -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/ffG45a3.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/ffoplsaa.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/atom_nom.tbl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Up-to-date: 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/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/restraint -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/restraint/restraintpotential.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/math -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/math/vec.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/math/do_fit.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/math/functions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/math/utilities.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/math/units.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/mdtypes -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/mdtypes/inputrec.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/mdtypes/md_enums.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/libgromacs_export.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/mpich/bin/gmx_mpich_d -- Set non-toolchain portion of runtime path of "/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/mpich/bin/gmx_mpich_d" to "" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/mpich/bin -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/mpich/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/lib64/mpich/bin/gmx-completion-gmx_mpich_d.bash -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-disre.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sasa.1 + popd ~/build/BUILD/gromacs-2024 + test -n mpich + module unload mpi/mpich-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 ~/build/BUILD/gromacs-2024/openmpi_d ~/build/BUILD/gromacs-2024 + pushd openmpi_d + DESTDIR=/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/nsfactor.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/bonds.dlg -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/ffG45a3.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/ffoplsaa.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/atom_nom.tbl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/spce.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/popc.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/dppc.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/spc.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/ca-shift.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/sw.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/xlateat.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/scatteringfactors.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/spc216.gro -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/table6-11.xvg -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/residues.dtd -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/dna.r2b -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/tip4p.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/spc.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/urea.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/specbond.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/dna.arn -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/rna.hdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/rna.r2b -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/spce.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/dna.rtp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber94.ff/rna.rtp -- Up-to-date: 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/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/dna.arn -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/tip5p.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/rna.hdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/rna.r2b -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/spce.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/dna.rtp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/rna.rtp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/gromacs/top/amber03.ff/ions.itp -- Up-to-date: 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Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-dump.1 -- Up-to-date: 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/builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-disre.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/man/man1/gmx-sasa.1 ~/build/BUILD/gromacs-2024 + popd + test -n openmpi + module unload mpi/openmpi-aarch64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + mkdir -p /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/doc/gromacs + install -pm 644 AUTHORS COPYING README /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/doc/gromacs + install -cpm 644 serial/docs/manual/gromacs.pdf /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/doc/gromacs/manual.pdf + install -cpm 644 /builddir/build/SOURCES/gromacs-README.fedora /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64/usr/share/doc/gromacs/README.fedora ~/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 ~/build/BUILD/gromacs-2024 + pushd /builddir/build/BUILDROOT/gromacs-2024-1.fc41.aarch64 + rm .//usr/bin/GMXRC .//usr/bin/GMXRC.bash .//usr/bin/GMXRC.csh .//usr/bin/GMXRC.zsh + rm .//usr/lib64/mpich/bin/GMXRC .//usr/lib64/mpich/bin/GMXRC.bash .//usr/lib64/mpich/bin/GMXRC.csh .//usr/lib64/mpich/bin/GMXRC.zsh .//usr/lib64/openmpi/bin/GMXRC .//usr/lib64/openmpi/bin/GMXRC.bash .//usr/lib64/openmpi/bin/GMXRC.csh .//usr/lib64/openmpi/bin/GMXRC.zsh .//usr/lib64/mpich/bin/demux.pl .//usr/lib64/mpich/bin/xplor2gmx.pl .//usr/lib64/openmpi/bin/demux.pl .//usr/lib64/openmpi/bin/xplor2gmx.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/demux.pl .//usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/xplor2gmx.pl .//usr/bin/g_xplor2gmx.pl + mkdir -p .//etc/bash_completion.d + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx.bash + rm .//usr/bin/gmx-completion-gmx.bash + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion.bash .//usr/lib64/mpich/bin/gmx-completion-gmx_mpich.bash .//usr/lib64/mpich/bin/gmx-completion-gmx_mpich_d.bash .//usr/lib64/mpich/bin/gmx-completion.bash .//usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi.bash .//usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi_d.bash .//usr/lib64/openmpi/bin/gmx-completion.bash + /usr/bin/find-debuginfo -j12 --strict-build-id -m -i --build-id-seed 2024-1.fc41 --unique-debug-suffix -2024-1.fc41.aarch64 --unique-debug-src-base gromacs-2024-1.fc41.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/gromacs-2024 find-debuginfo: starting Extracting debug info from 11 files DWARF-compressing 11 files sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/gromacs-2024-1.fc41.aarch64 cpio: mpich/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory 48179 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/g_demux.pl from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/bin/g_xplor2gmx.pl from /usr/bin/env perl to #!/usr/bin/perl *** WARNING: ./usr/src/debug/gromacs-2024-1.fc41.aarch64/src/gromacs/gpu_utils/nvshmem_utils.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/gromacs-2024-1.fc41.aarch64/src/gromacs/gpu_utils/nvshmem_utils.h is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ZAGvfs + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2024 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/50347/exe ']' +++ /usr/bin/readlink /proc/50347/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ~/build/BUILD/gromacs-2024/serial ~/build/BUILD/gromacs-2024 ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial + [[ '' = openmpi ]] + /usr/bin/cmake --build redhat-linux-build -j12 --verbose --target check Change Dir: '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j12 check /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024 -B/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 check gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2024 -B/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/CMakeFiles 91 /usr/bin/gmake -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend /usr/bin/gmake -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/CMakeFiles/gmx_objlib.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/external/clFFT/src /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/options /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build 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/builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/selection /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/external/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color=" Dependencies file "src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/CMakeFiles/gmx_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/CMakeFiles/gmx_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/energyterm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build Dependencies file "src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/options/CMakeFiles/options.dir/options.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/CMakeFiles/options.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/external/googletest/googletest/CMakeFiles/gtest.dir/build.make src/external/googletest/googletest/CMakeFiles/gtest.dir/build Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Dependencies file "src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Consolidate compiler generated dependencies of target mdrun_objlib Consolidate compiler generated dependencies of target scanner Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 0%] Generating release version information Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". cd /builddir/build/BUILD/gromacs-2024 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.12 -D PROJECT_VERSION=2024-Fedora41 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2024 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora41 -P /builddir/build/BUILD/gromacs-2024/cmake/gmxGenerateVersionInfoWithoutGit.cmake Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". [ 0%] Building CXX object src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target options Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/external/googletest/googletest && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_LANG_CXX11 -Dgtest_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT src/external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/src/gtest-all.cc Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". /usr/bin/gmake -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/build Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/colvars_objlib.dir/compiler_depend.internal". [ 1%] Built target energyanalysis [ 1%] Built target mdrun_objlib [ 1%] Built target gmx_objlib [ 1%] Built target linearalgebra [ 1%] Built target scanner gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/options/CMakeFiles/options.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/depend Consolidate compiler generated dependencies of target clFFT gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target thread_mpi gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 1%] Built target options [ 1%] Built target release-version-info gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". Dependencies file "src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/CMakeFiles/pulling.dir/compiler_depend.internal". [ 2%] Built target clFFT [ 4%] Built target thread_mpi Consolidate compiler generated dependencies of target pulling gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build Consolidate compiler generated dependencies of target colvars_objlib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/pulling/CMakeFiles/pulling.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 4%] Built target pulling gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/colvars_objlib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/depend /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake "--color=" [ 6%] Built target colvars_objlib Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target taskassignment Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build.make src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". Dependencies file "src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 6%] Built target taskassignment Consolidate compiler generated dependencies of target modularsimulator gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 7%] Built target modularsimulator /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color=" Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/gpu_3dfft_ocl.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". 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Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Dependencies file "src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/CMakeFiles/libgromacs.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target libgromacs gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 58%] Built target libgromacs /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/depend /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/gmxapi /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/DependInfo.cmake "--color=" gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/DependInfo.cmake "--color=" Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build Dependencies file "api/nblib/CMakeFiles/nblib.dir/box.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/CMakeFiles/gmxapi.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/topology.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". Dependencies file "api/nblib/CMakeFiles/nblib.dir/virials.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/CMakeFiles/nblib.dir/compiler_depend.internal". [ 58%] Built target gmx /usr/bin/gmake -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/tests/CMakeFiles/gmxtests.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target gmxapi gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f api/gmxapi/CMakeFiles/gmxapi.dir/build.make api/gmxapi/CMakeFiles/gmxapi.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/gmxapi/CMakeFiles/gmxapi.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'tests/CMakeFiles/gmxtests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' Consolidate compiler generated dependencies of target nblib gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/build [ 58%] Built target gmxapi [ 58%] Built target gmxtests gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 59%] Built target nblib /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib/samples /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib/samples /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/samples /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake "--color=" Dependencies file "api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/compiler_depend.internal". Dependencies file "api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d" is newer than depends file "/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target methane-water-integration Consolidate compiler generated dependencies of target argon-forces-integration gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build /usr/bin/gmake -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build'. gmake[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/methane-water-integration.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 59%] Built target methane-water-integration [ 59%] Built target argon-forces-integration [ 59%] Linking CXX shared library ../../../../lib/libgtest.so cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.13.0 -o ../../../../lib/libgtest.so.1.13.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o" cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/external/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgtest.so gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 59%] Built target gtest /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 59%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/external/googletest/googlemock && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -D_GNU_SOURCE=1 -Dgmock_EXPORTS -I/builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -I/builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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-DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock 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-I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects 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-fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -MF CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o.d -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 62%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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-I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects 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/builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/energycomparison.cpp [ 62%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem 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Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o [ 62%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/colvars/tests/colvars.cpp [ 62%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o" "CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libtestutils.a ../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 [ 62%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o -MF CMakeFiles/mdlib-test.dir/constr.cpp.o.d -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/constr.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 62%] Built target utility-mpi-test [ 62%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true 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src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/constrtestdata.cpp [ 63%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxlib/nonbonded/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 63%] Building CXX object src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 63%] Linking CXX executable ../../../../../bin/nonbonded-fep-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxlib/nonbonded/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nonbonded-fep-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nonbonded-fep-test.dir/nb_free_energy.cpp.o" "CMakeFiles/nonbonded-fep-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/nonbonded-fep-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.9.0.0 -lm ../../../../../lib/libgmock.so.1.13.0 ../../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 63%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -MF CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o.d -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/trajectorycomparison.cpp [ 63%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/testutils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/testutils/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -MF CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o.d -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/tests/xvgtest_tests.cpp [ 64%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -DGMX_CP2K=0 -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include 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-c /builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/qmmm/tests/qmmm.cpp [ 64%] Building CXX object src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 64%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -MF CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o.d -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 64%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem 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CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/ebin.cpp [ 64%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/testutils-test.dir/interactivetest.cpp.o" "CMakeFiles/testutils-test.dir/refdata_tests.cpp.o" "CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o" "CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o" "CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o" -o ../../../bin/testutils-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libtestutils.a ../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 [ 64%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem 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/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/awh/tests/biasgrid.cpp [ 64%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 64%] Linking CXX executable ../../../../../bin/density_fitting_applied_forces-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/density_fitting_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o" "CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/density_fitting_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.9.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgtest.so.1.13.0 [ 64%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 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-I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest 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CMakeFiles/qmmm_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o" "CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../../bin/qmmm_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.9.0.0 ../../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 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src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem 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/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/freeenergyparameters.cpp [ 67%] Linking CXX executable ../../../../../bin/colvars_applied_forces-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/colvars/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/colvars_applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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awhParams)->gmx::AwhParams::awhBiasParams().gmx::ArrayRef::operator[](0)’ 179 | const AwhBiasParams& awhBiasParams = awhParams.awhBiasParams()[0]; | ^ [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o -MF CMakeFiles/utility-test.dir/bitmask64.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/bitmask64.cpp [ 67%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/applied_forces-test.dir/electricfield.cpp.o" "CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 gmake[3]: Leaving directory 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrog.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/leapfrog.cpp [ 67%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o cd 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src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -MF CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o.d -o CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/awh/tests/bias_fep_lambda_state.cpp [ 67%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/leapfrogtestdata.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 67%] Built target qmmm_applied_forces-test [ 67%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -MF CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o.d -o CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/parrinellorahman.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 67%] Built target colvars_applied_forces-test /usr/bin/gmake -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 67%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o -MF CMakeFiles/listed_forces-test.dir/bonded.cpp.o.d -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/tests/bonded.cpp [ 67%] Building CXX object src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/applied_forces/awh/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/awh/tests\" 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/builddir/build/BUILD/gromacs-2024/src/gromacs/applied_forces/awh/tests/friction_metric.cpp [ 67%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o -MF CMakeFiles/mdlib-test.dir/settle.cpp.o.d -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/settle.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 67%] Built target applied_forces-test /usr/bin/gmake -f src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/build.make src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/nbnxm/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/build.make src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 67%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -MF CMakeFiles/nbnxm-test.dir/exclusions.cpp.o.d -o CMakeFiles/nbnxm-test.dir/exclusions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/exclusions.cpp [ 67%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/kernel_test.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/exclusions.cpp:52: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 67%] Building CXX object src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -MF CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o.d -o CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/kernelsetup.cpp [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o -MF CMakeFiles/utility-test.dir/cstringutil.cpp.o.d -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/cstringutil.cpp [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o -MF CMakeFiles/utility-test.dir/bitmask128.cpp.o.d -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/bitmask128.cpp [ 67%] Built target testutils-test [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -MF CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o.d -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/defaultinitializationallocator.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/kernelsetup.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/atomdata.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/kernel_common.h:49, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/kernel_test.cpp:69: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -MF CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o.d -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/enumerationhelpers.cpp /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/kernel_test.cpp: In function ‘std::pair gmx::test::{anonymous}::combineLJParams(real, real, real, real, LJCombinationRule)’: /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/kernel_test.cpp:186:80: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 186 | const LJCombinationRule ljCombinationRule) | ^ [ 67%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -MF CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o.d -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 67%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o -MF CMakeFiles/listed_forces-test.dir/pairs.cpp.o.d -o CMakeFiles/listed_forces-test.dir/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/listed_forces/tests/pairs.cpp [ 67%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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&& /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include 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../../../../bin/nbnxm-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/nbnxm/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nbnxm-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nbnxm-test.dir/exclusions.cpp.o" "CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o" "CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o" "CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/nbnxm-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 68%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include 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-I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o -MF CMakeFiles/utility-test.dir/logger.cpp.o.d -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/logger.cpp [ 69%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o -MF CMakeFiles/utility-test.dir/message_string_collector.cpp.o.d -o CMakeFiles/utility-test.dir/message_string_collector.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/message_string_collector.cpp [ 70%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp In member function ‘__ct ’, inlined from ‘__ct_base ’ at /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/kernel_test.cpp:365:60, inlined from ‘__ct ’ at /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/kernel_test.cpp:555:31, inlined from ‘operator()’ at /builddir/build/BUILD/gromacs-2024/src/testutils/include/testutils/testinit.h:181:64, inlined from ‘CreateTest’ at /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include/gtest/gtest.h:2288:50: /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/tests/kernel_test.cpp:210:28: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 210 | combineLJParams(sigmaO, epsilonO, sigmaO, epsilonO, ljCombinationRule); | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 70%] Built target awh-test /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 70%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -MF CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o.d -o CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/tests/haloexchange_mpi.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/constrtestrunners_gpu.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 70%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -MF CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o.d -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/leapfrogtestrunners_gpu.cpp [ 70%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/domdec-test.dir/hashedmap.cpp.o" "CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o" "CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 70%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o -MF CMakeFiles/utility-test.dir/path.cpp.o.d -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/path.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/domdec_internal.h:48, from /builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/tests/haloexchange_mpi.cpp:61: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 70%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o -MF CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o.d -o CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/mdgpugraph.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/leapfrogtestrunners_gpu.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ /usr/bin/gmake -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 70%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Built target nbnxm-test [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmebsplinetest.cpp:56: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/tests/settletestrunners_gpu.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmegathertest.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmesolvetest.cpp:57: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/gpu_3dfft.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/fft/tests/fft.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o -MF CMakeFiles/utility-test.dir/range.cpp.o.d -o CMakeFiles/utility-test.dir/range.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/range.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o -MF CMakeFiles/utility-test.dir/strconvert.cpp.o.d -o CMakeFiles/utility-test.dir/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/strconvert.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Built target domdec-test /usr/bin/gmake -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 72%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/device_availability.cpp [ 72%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem 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CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o.d -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 72%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o" "CMakeFiles/mdlib-test.dir/calcvir.cpp.o" "CMakeFiles/mdlib-test.dir/constr.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/ebin.cpp.o" "CMakeFiles/mdlib-test.dir/energydrifttracker.cpp.o" "CMakeFiles/mdlib-test.dir/energyoutput.cpp.o" "CMakeFiles/mdlib-test.dir/expanded.cpp.o" "CMakeFiles/mdlib-test.dir/freeenergyparameters.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrog.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/parrinellorahman.cpp.o" "CMakeFiles/mdlib-test.dir/settle.cpp.o" "CMakeFiles/mdlib-test.dir/settletestdata.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o" "CMakeFiles/mdlib-test.dir/shake.cpp.o" "CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o" "CMakeFiles/mdlib-test.dir/updategroups.cpp.o" "CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o" "CMakeFiles/mdlib-test.dir/constrtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/leapfrogtestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/mdgpugraph.cpp.o" "CMakeFiles/mdlib-test.dir/settletestrunners_gpu.cpp.o" "CMakeFiles/mdlib-test.dir/wholemoleculetransform.cpp.o" "CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdlib-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 72%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -MF CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o.d -o CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/stringtoenumvalueconverter.cpp [ 72%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/device_stream_manager.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:58: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 72%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -MF CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem 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src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o -MF CMakeFiles/utility-test.dir/template_mp.cpp.o.d -o CMakeFiles/utility-test.dir/template_mp.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/template_mp.cpp [ 72%] Linking CXX executable ../../../../bin/domdec-mpi-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o" "CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/domdec-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o -MF CMakeFiles/utility-test.dir/textwriter.cpp.o.d -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/textwriter.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 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/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/tests/typetraits.cpp [ 72%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/fft-test.dir/fft.cpp.o" "CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fft-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd 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src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -MF CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o.d -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock 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src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -MF CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o.d -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmetestcommon.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Built target domdec-mpi-test In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmetestcommon.cpp:44: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 72%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o -MF CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/pinnedmemorychecker.cpp [ 72%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser 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CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp [ 72%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -MF CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/device_buffer.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/devicetransfers_ocl.cpp:42: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 72%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem 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-fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o -MF CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o.d -o CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/tests/mockhardwaretopology.cpp [ 72%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests 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/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/gpueventsynchronizer.cpp [ 72%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -MF CMakeFiles/math-test.dir/coordinatetransformation.cpp.o.d -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests/coordinatetransformation.cpp [ 72%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o -MF CMakeFiles/math-test.dir/densityfit.cpp.o.d -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests/densityfit.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_event_ocl.h:44, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_event.h:117, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gpueventsynchronizer.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/gpueventsynchronizer.cpp:43: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/device_context.h:55, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/tests/device_buffer.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Built target fft-test [ 72%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o -MF CMakeFiles/math-test.dir/dofit.cpp.o.d -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests/dofit.cpp [ 72%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY 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src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/domdec/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdlib/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/fft/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o -MF CMakeFiles/ewald-test.dir/pme.cpp.o.d -o CMakeFiles/ewald-test.dir/pme.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pme.cpp /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -MF CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o.d -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pmetestcommon.h:50, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/tests/pme.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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Defaulting to 300 (OpenCL 3.0)") | ^ [ 72%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -MF CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o.d -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 72%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/utility-test.dir/alignedallocator.cpp.o" "CMakeFiles/utility-test.dir/arrayref.cpp.o" "CMakeFiles/utility-test.dir/booltype.cpp.o" "CMakeFiles/utility-test.dir/bitmask32.cpp.o" "CMakeFiles/utility-test.dir/bitmask64.cpp.o" "CMakeFiles/utility-test.dir/bitmask128.cpp.o" "CMakeFiles/utility-test.dir/cstringutil.cpp.o" "CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o" "CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o" "CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o" "CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o" "CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o" "CMakeFiles/utility-test.dir/listoflists.cpp.o" "CMakeFiles/utility-test.dir/logger.cpp.o" "CMakeFiles/utility-test.dir/message_string_collector.cpp.o" "CMakeFiles/utility-test.dir/path.cpp.o" "CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o" "CMakeFiles/utility-test.dir/range.cpp.o" "CMakeFiles/utility-test.dir/strconvert.cpp.o" "CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o" "CMakeFiles/utility-test.dir/stringutil.cpp.o" "CMakeFiles/utility-test.dir/template_mp.cpp.o" "CMakeFiles/utility-test.dir/textreader.cpp.o" "CMakeFiles/utility-test.dir/textwriter.cpp.o" "CMakeFiles/utility-test.dir/typetraits.cpp.o" "CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/utility-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o -MF CMakeFiles/hardware-test.dir/device_management.cpp.o.d -o CMakeFiles/hardware-test.dir/device_management.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/tests/device_management.cpp [ 72%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_DYNAMIC_REGISTRATION=true -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/device_information.h:58, from /builddir/build/BUILD/gromacs-2024/src/gromacs/hardware/tests/device_management.cpp:51: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 72%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem 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CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 [ 72%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -MF CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o.d -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/tests/accessor_policy.cpp /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o" "CMakeFiles/ewald-test.dir/pmegathertest.cpp.o" "CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o" "CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o" "CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o" "CMakeFiles/ewald-test.dir/pme.cpp.o" "CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/ewald-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 [ 72%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o -MF CMakeFiles/mdspan-test.dir/extents.cpp.o.d -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/tests/extents.cpp [ 72%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem 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/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/tests/extensions.cpp [ 72%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdspan/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer 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src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/hardware/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/hardware/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 72%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 72%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/onlinehelp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -MF CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o.d -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 72%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o" "CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o" "CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o" "CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o" "CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o" "CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o" "CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o" "CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gpu_utils-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o -MF CMakeFiles/math-test.dir/gausstransform.cpp.o.d -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/math/tests/gausstransform.cpp [ 72%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o" "CMakeFiles/mdspan-test.dir/extents.cpp.o" "CMakeFiles/mdspan-test.dir/extensions.cpp.o" "CMakeFiles/mdspan-test.dir/layouts.cpp.o" "CMakeFiles/mdspan-test.dir/mdspan.cpp.o" "CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdspan-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 72%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" 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/builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -MF CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o.d -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/tests/abstractoptionstorage.cpp [ 72%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o -MF CMakeFiles/options-test.dir/filenameoption.cpp.o.d -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/tests/filenameoption.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Built target hardware-test [ 72%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o" "CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o" "CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/onlinehelp-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Built target mdlib-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 72%] Built target ewald-test [ 73%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ 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src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem 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src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o -MF CMakeFiles/options-test.dir/optionsassigner.cpp.o.d -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/tests/optionsassigner.cpp [ 74%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o -MF CMakeFiles/options-test.dir/repeatingsection.cpp.o.d -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/options/tests/repeatingsection.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 74%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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-I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" 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-I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -MF CMakeFiles/random-test.dir/exponentialdistribution.cpp.o.d -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/random/tests/exponentialdistribution.cpp [ 75%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd 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src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o -MF CMakeFiles/random-test.dir/gammadistribution.cpp.o.d -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/random/tests/gammadistribution.cpp [ 75%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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/builddir/build/BUILD/gromacs-2024/src/gromacs/restraint/tests/manager.cpp [ 75%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem 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-fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o -MF CMakeFiles/random-test.dir/seed.cpp.o.d -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/random/tests/seed.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 75%] Built target utility-test /usr/bin/gmake -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build 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src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tables/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -isystem 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src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 76%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/restraintpotential-test.dir/manager.cpp.o" "CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/restraintpotential-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o -MF CMakeFiles/random-test.dir/threefry.cpp.o.d -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/random/tests/threefry.cpp [ 78%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include 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/builddir/build/BUILD/gromacs-2024/src/gromacs/random/tests/uniformrealdistribution.cpp [ 78%] Linking CXX executable ../../../../bin/mdtypes-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdtypes/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdtypes-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdtypes-test.dir/enerdata.cpp.o" "CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o" "CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o" "CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o" "CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o" "CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdtypes-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 78%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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'/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 78%] Built target restraintpotential-test /usr/bin/gmake -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f 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/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/tests/exclusionblocks.cpp [ 78%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 78%] Linking CXX executable ../../../../bin/timing-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/timing/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/timing-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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78%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/random-test.dir/exponentialdistribution.cpp.o" "CMakeFiles/random-test.dir/gammadistribution.cpp.o" "CMakeFiles/random-test.dir/normaldistribution.cpp.o" "CMakeFiles/random-test.dir/seed.cpp.o" "CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o" "CMakeFiles/random-test.dir/threefry.cpp.o" "CMakeFiles/random-test.dir/uniformintdistribution.cpp.o" "CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o" "CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/random-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 78%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/tests && 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gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 78%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external 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src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o -MF CMakeFiles/simd-test.dir/base.cpp.o.d -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/base.cpp [ 78%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o" "CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o ../CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o ../CMakeFiles/taskassignment.dir/findallgputasks.cpp.o ../CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o ../CMakeFiles/taskassignment.dir/resourcedivision.cpp.o ../CMakeFiles/taskassignment.dir/taskassignment.cpp.o ../CMakeFiles/taskassignment.dir/usergpuids.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 78%] Built target mdtypes-test [ 78%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/table-test.dir/splinetable.cpp.o" "CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/table-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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/builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o -MF CMakeFiles/compat-test.dir/mp11.cpp.o.d -o CMakeFiles/compat-test.dir/mp11.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/compat/tests/mp11.cpp [ 79%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem 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src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o -MF CMakeFiles/compat-test.dir/pointers.cpp.o.d -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/compat/tests/pointers.cpp [ 79%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -MF CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o.d -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 80%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock 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src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o -MF CMakeFiles/topology-test.dir/idef.cpp.o.d -o CMakeFiles/topology-test.dir/idef.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/topology/tests/idef.cpp [ 80%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pulling/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/compat/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem 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CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o -MF CMakeFiles/simd-test.dir/scalar_math.cpp.o.d -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/scalar_math.cpp [ 80%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pull-test.dir/pull.cpp.o" "CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../CMakeFiles/pulling.dir/output.cpp.o ../CMakeFiles/pulling.dir/pull.cpp.o ../CMakeFiles/pulling.dir/pull_rotation.cpp.o ../CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o ../CMakeFiles/pulling.dir/pullutil.cpp.o ../CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lmuparser -lm ../../../../lib/libgtest.so.1.13.0 /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.4 [ 80%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o -MF CMakeFiles/topology-test.dir/index.cpp.o.d -o CMakeFiles/topology-test.dir/index.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/topology/tests/index.cpp [ 80%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/compat-test.dir/mp11.cpp.o" "CMakeFiles/compat-test.dir/pointers.cpp.o" "CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/compat-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 80%] Built target random-test /usr/bin/gmake -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/tests 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem 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cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o" "CMakeFiles/math-test.dir/boxmatrix.cpp.o" "CMakeFiles/math-test.dir/coordinatetransformation.cpp.o" "CMakeFiles/math-test.dir/densityfit.cpp.o" "CMakeFiles/math-test.dir/dofit.cpp.o" "CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o" "CMakeFiles/math-test.dir/functions.cpp.o" "CMakeFiles/math-test.dir/gausstransform.cpp.o" "CMakeFiles/math-test.dir/densityfittingforce.cpp.o" "CMakeFiles/math-test.dir/invertmatrix.cpp.o" "CMakeFiles/math-test.dir/matrix.cpp.o" "CMakeFiles/math-test.dir/multidimarray.cpp.o" "CMakeFiles/math-test.dir/neldermead.cpp.o" "CMakeFiles/math-test.dir/optimization.cpp.o" "CMakeFiles/math-test.dir/paddedvector.cpp.o" "CMakeFiles/math-test.dir/vectypes.cpp.o" "CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/math-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 80%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o -MF CMakeFiles/simd-test.dir/simd.cpp.o.d -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 80%] Built target taskassignment-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 80%] Built target table-test [ 80%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" 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'/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxana/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem 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src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o -MF CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o.d -o CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxana/tests/gmx_chi.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/tests/editconf.cpp [ 80%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd 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src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o -MF CMakeFiles/topology-test.dir/symtab.cpp.o.d -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/topology/tests/symtab.cpp /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 80%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include 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src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem 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-I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 80%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" 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/builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 80%] Built target pull-test [ 80%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o [ 80%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include 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src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o -MF CMakeFiles/simd-test.dir/simd_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd_math.cpp /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 80%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 80%] Built target options-test /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake "--color=" [ 80%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/topology-test.dir/atoms.cpp.o" "CMakeFiles/topology-test.dir/exclusionblocks.cpp.o" "CMakeFiles/topology-test.dir/idef.cpp.o" "CMakeFiles/topology-test.dir/index.cpp.o" "CMakeFiles/topology-test.dir/mtop.cpp.o" "CMakeFiles/topology-test.dir/symtab.cpp.o" "CMakeFiles/topology-test.dir/topsort.cpp.o" "CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/topology-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 80%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gmxana-test.dir/entropy.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o" "CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o" "CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxana-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 82%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem 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CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/tests/genrestr.cpp /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd_math.cpp: In static member function ‘static std::vector > gmx::test::SimdMathTest::generateTestPoints(Range, std::size_t)’: /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd_math.cpp:169:19: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 169 | std::vector SimdMathTest::generateTestPoints(Range inputRange, std::size_t inputPoints) | ^~~~~~~~~~~~ /usr/bin/gmake -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd 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src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -MF CMakeFiles/correlations-test.dir/correlationdataset.cpp.o.d -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -MF CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o.d -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include 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-I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/mdtypes/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem 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CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/tests/grompp_directives.cpp [ 83%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o" "CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/pdb2gmx3-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 83%] Built target gmxana-test [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -MF CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o.d -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp [ 83%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/correlations-test.dir/autocorr.cpp.o" "CMakeFiles/correlations-test.dir/correlationdataset.cpp.o" "CMakeFiles/correlations-test.dir/expfit.cpp.o" "CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o" "CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/correlations-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 83%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -MF CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o.d -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd_vector_operations.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 83%] Built target pdb2gmx1-test [ 83%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o -MF CMakeFiles/simd-test.dir/simd4_math.cpp.o.d -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd4_math.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock 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/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -MF CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o.d -o CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/tests/energyterm.cpp [ 84%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem 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[ 84%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem 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-mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o" "CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 84%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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-DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem 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/builddir/build/BUILD/gromacs-2024/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 84%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o -MF CMakeFiles/coordinateio-test.dir/register.cpp.o.d -o CMakeFiles/coordinateio-test.dir/register.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/tests/register.cpp [ 84%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/simd-test.dir/base.cpp.o" "CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o" "CMakeFiles/simd-test.dir/scalar.cpp.o" "CMakeFiles/simd-test.dir/scalar_util.cpp.o" "CMakeFiles/simd-test.dir/scalar_math.cpp.o" "CMakeFiles/simd-test.dir/simd.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o" "CMakeFiles/simd-test.dir/simd_integer.cpp.o" "CMakeFiles/simd-test.dir/simd_math.cpp.o" "CMakeFiles/simd-test.dir/simd_memory.cpp.o" "CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/simd4.cpp.o" "CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o" "CMakeFiles/simd-test.dir/simd4_math.cpp.o" "CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o" "CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/simd-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 84%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o -MF CMakeFiles/tool-test.dir/make_ndx.cpp.o.d -o CMakeFiles/tool-test.dir/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/tests/make_ndx.cpp [ 84%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd 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src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o -MF CMakeFiles/tool-test.dir/report_methods.cpp.o.d -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/tests/report_methods.cpp [ 84%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o -MF CMakeFiles/tool-test.dir/trjconv.cpp.o.d -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/tools/tests/trjconv.cpp [ 84%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/energyanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 84%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a "CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o" "CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o" /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 85%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment 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/builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o -MF CMakeFiles/selection-test.dir/indexutil.cpp.o.d -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/tests/indexutil.cpp [ 85%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o cd 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src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o -MF CMakeFiles/coordinateio-test.dir/requirements.cpp.o.d -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/tests/requirements.cpp [ 85%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG 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src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -MF CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/outputfiles.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 85%] Built target energyanalysis-test [ 85%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/coordinateio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -MF CMakeFiles/coordinateio-test.dir/setatoms.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/tests/setatoms.cpp [ 85%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -MF CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o.d -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/coordinateio/tests/setbothtime.cpp [ 85%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/tool-test.dir/dump.cpp.o" "CMakeFiles/tool-test.dir/helpwriting.cpp.o" "CMakeFiles/tool-test.dir/make_ndx.cpp.o" "CMakeFiles/tool-test.dir/report_methods.cpp.o" "CMakeFiles/tool-test.dir/trjconv.cpp.o" "CMakeFiles/tool-test.dir/convert-tpr.cpp.o" "CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/tool-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 [ 85%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -MF CMakeFiles/fileio-test.dir/mrcserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/tests/mrcserializer.cpp /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd_math.cpp: In function ‘generateTestPointsTest’: /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd_math.cpp:416:32: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 416 | result = generateTestPoints(Range(-1e10, -1), points); | ^ [ 85%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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/builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/grompp.cpp [ 85%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/mimic.cpp /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd_math.cpp: In function ‘generateTestPoints’: /builddir/build/BUILD/gromacs-2024/src/gromacs/simd/tests/simd_math.cpp:169:19: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 169 | std::vector SimdMathTest::generateTestPoints(Range inputRange, std::size_t inputPoints) | ^ [ 85%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o -MF CMakeFiles/selection-test.dir/selectioncollection.cpp.o.d -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/selection/tests/selectioncollection.cpp [ 85%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" 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src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -MF CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o.d -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/trajectory_writing.cpp [ 85%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/mdrun-modules-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/freezegroups.cpp.o cd 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src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -MF CMakeFiles/mdrun-test.dir/freezegroups.cpp.o.d -o CMakeFiles/mdrun-test.dir/freezegroups.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/freezegroups.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 85%] Built target simd-test [ 85%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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-I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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/builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 85%] Built target tool-test [ 85%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o [ 85%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/coordinateio-test.dir/builder.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o" "CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o" "CMakeFiles/coordinateio-test.dir/register.cpp.o" "CMakeFiles/coordinateio-test.dir/requirements.cpp.o" "CMakeFiles/coordinateio-test.dir/setatoms.cpp.o" "CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o" "CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o" "CMakeFiles/coordinateio-test.dir/settimestep.cpp.o" 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/timecontrol.cpp.o -MF CMakeFiles/fileio-test.dir/timecontrol.cpp.o.d -o CMakeFiles/fileio-test.dir/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/tests/timecontrol.cpp [ 86%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 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CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o.d -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 86%] Linking CXX executable ../../../../bin/mdrun-output-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o" "CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o" "CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o" "CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o" "CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 86%] Building CXX 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src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o -MF CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o.d -o CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/constantacceleration.cpp [ 86%] Linking CXX executable ../../../../bin/mdrun-io-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-io-test.dir/checkpoint.cpp.o" "CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o" "CMakeFiles/mdrun-io-test.dir/grompp.cpp.o" "CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o" "CMakeFiles/mdrun-io-test.dir/termination.cpp.o" "CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 86%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/fileio/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include 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src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include 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'/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 86%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/normalmodes.cpp [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-test.dir/multiple_time_stepping.cpp.o" "CMakeFiles/mdrun-test.dir/swapcoords.cpp.o" "CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o" "CMakeFiles/mdrun-test.dir/freezegroups.cpp.o" "CMakeFiles/mdrun-test.dir/constantacceleration.cpp.o" "CMakeFiles/mdrun-test.dir/boxdeformation.cpp.o" "CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 87%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/simple_mdrun.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 87%] Built target coordinateio-test [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/fileio-test cd 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"CMakeFiles/fileio-test.dir/filemd5.cpp.o" "CMakeFiles/fileio-test.dir/filetypes.cpp.o" "CMakeFiles/fileio-test.dir/mrcserializer.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o" "CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o" "CMakeFiles/fileio-test.dir/readinp.cpp.o" "CMakeFiles/fileio-test.dir/timecontrol.cpp.o" "CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o" "CMakeFiles/fileio-test.dir/tngio.cpp.o" "CMakeFiles/fileio-test.dir/xvgio.cpp.o" "CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/fileio-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 ../../../../lib/libgmock.so.1.13.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/mdrun-single-rank-algorithms-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-single-rank-algorithms-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-single-rank-algorithms-test.dir/dispersion_correction.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/ewaldsurfaceterm.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o" "CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-single-rank-algorithms-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include 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src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o" "CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 89%] Linking CXX executable ../../../../bin/mdrun-multisim-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory 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-I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/mimic.cpp [ 90%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o" "CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o cd 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src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/multisimtest.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -MF CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/replicaexchange.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Built target mdrun-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/depend gmake[3]: Entering directory 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-I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects 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src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem 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-fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -MF CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o.d -o CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/pmetest.cpp [ 90%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o" "CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/periodicactions.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Built target mdrun-multisim-test /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/build [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/periodicactions.cpp gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/periodicactions.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/ewald/pme.h:51, from /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/pmetest.cpp:53: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Built target mdrun-tpi-test [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -MF CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/replicaexchange_equivalence.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Built target fileio-test [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include 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CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -MF CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o.d -o CMakeFiles/mdrun-coordination-constraints-test.dir/periodicactions_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/periodicactions_constraints.cpp [ 90%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-multisim-replex-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/replicaexchange.cpp.o" "CMakeFiles/mdrun-multisim-replex-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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'/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/freeenergy.cpp [ 90%] Linking CXX executable ../../../../bin/mdrun-mpi-pme-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-pme-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o" "CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-pme-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Built target mdrun-mpi-test [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem 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-I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o cd 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src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 90%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem 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"CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o" "CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-coordination-basic-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd 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src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -MF CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o.d -o CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/pull_rotation.cpp /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests 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-I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard 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src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests/simulator.cpp [ 91%] Linking CXX executable ../../../../bin/mdrun-coordination-constraints-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-constraints-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer 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/usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 91%] Built target mdrun-mpi-pme-test gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 91%] Built target selection-test [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/mdrun-coordination-coupling-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-coordination-coupling-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions.cpp.o" "CMakeFiles/mdrun-coordination-coupling-test.dir/periodicactions_coupling.cpp.o" 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/builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/mdrun-multisim-replex-equivalence-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o" "CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-multisim-replex-equivalence-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 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-I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/box.cpp.o -MF CMakeFiles/nblib-setup-test.dir/box.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/box.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/tests/box.cpp [ 92%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/interactions.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/interactions.cpp.o -MF CMakeFiles/nblib-setup-test.dir/interactions.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/interactions.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/tests/interactions.cpp [ 92%] Linking CXX executable ../../../../bin/mdrun-rotation-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-rotation-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o" "CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-rotation-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 92%] Building CXX object api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o [ 92%] Linking CXX executable ../../../../bin/mdrun-simulator-comparison-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/workflow/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/workflow/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-simulator-comparison-test.dir/link.txt --verbose=1 [ 92%] Built target mdrun-fep-test /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o" "CMakeFiles/mdrun-simulator-comparison-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-simulator-comparison-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 92%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/particletype.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/particletype.cpp.o -MF CMakeFiles/nblib-setup-test.dir/particletype.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/particletype.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/tests/particletype.cpp [ 92%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/runner.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/runner.cpp.o -MF CMakeFiles/gmxapi-test.dir/runner.cpp.o.d -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/tests/runner.cpp [ 92%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o -MF CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/tests/pbcholder.cpp [ 93%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/status.cpp.o -MF CMakeFiles/gmxapi-test.dir/status.cpp.o.d -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/tests/status.cpp [ 94%] Linking CXX executable ../../../../../bin/workflow-details-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/workflow-details-test.dir/workflow.cpp.o" "CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o" ../../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.4.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../../lib/libgmock.so.1.13.0 ../../../../../lib/libgtest.so.1.13.0 [ 94%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -MF CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o.d -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/tests/stopsignaler.cpp [ 94%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/molecules.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/molecules.cpp.o -MF CMakeFiles/nblib-setup-test.dir/molecules.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/molecules.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/tests/molecules.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 94%] Building CXX object api/nblib/tests/CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/api -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/nblib/tests -I/builddir/build/BUILD/gromacs-2024/api/nblib/include -I/builddir/build/BUILD/gromacs-2024/api/nblib -I/builddir/build/BUILD/gromacs-2024/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2024/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o -MF CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o.d -o CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/tests/nbnxmsetup.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-pull-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-pull-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-pull-test.dir/pull.cpp.o" "CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-pull-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2024/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2024/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2024/api/nblib/tests/nbnxmsetup.cpp:49: /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 94%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/include -I/builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/tests -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o -MF CMakeFiles/gmxapi-test.dir/system.cpp.o.d -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/gmxapi/cpp/tests/system.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-vsites-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-vsites-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o" "CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-vsites-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 94%] Building CXX object api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-integrator-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/nblib-integrator-test.dir/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/nblib-integrator-test.dir/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 94%] Built target workflow-details-test /usr/bin/gmake -f 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o -MF CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o.d -o CMakeFiles/nblib-tpr-test.dir/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/tests/tpr.cpp [ 94%] Linking CXX executable ../../../bin/nblib-integrator-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-integrator-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/bin/gmake -f api/nblib/tests/CMakeFiles/nblib-integration-test.dir/build.make api/nblib/tests/CMakeFiles/nblib-integration-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests/CMakeFiles/nblib-integration-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f 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-isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/nblib/tests/CMakeFiles/nblib-integration-test.dir/gmxcalculator.cpp.o -MF CMakeFiles/nblib-integration-test.dir/gmxcalculator.cpp.o.d -o CMakeFiles/nblib-integration-test.dir/gmxcalculator.cpp.o -c /builddir/build/BUILD/gromacs-2024/api/nblib/tests/gmxcalculator.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 95%] Built target mdrun-multisim-replex-equivalence-test /usr/bin/gmake -f api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/build.make api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib/listed_forces/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/listed_forces/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f 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/builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 95%] Built target mdrun-simulator-comparison-test [ 95%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/listed_forces/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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/builddir/build/BUILD/gromacs-2024/api/nblib/listed_forces/tests/listedtesthelpers.cpp [ 95%] Building CXX object api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/gmxapi/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/cpp/tests/CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o -MF CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o.d -o CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 95%] Built target nblib-integrator-test [ 95%] Building CXX object api/nblib/listed_forces/tests/CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o cd 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../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a [ 95%] Linking CXX executable ../../../../bin/gmxapi-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/gmxapi/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/gmxapi-test.dir/restraint.cpp.o" "CMakeFiles/gmxapi-test.dir/runner.cpp.o" "CMakeFiles/gmxapi-test.dir/status.cpp.o" "CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o" "CMakeFiles/gmxapi-test.dir/system.cpp.o" "CMakeFiles/gmxapi-test.dir/version.cpp.o" "CMakeFiles/gmxapi-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o" ../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.4.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 95%] Building CXX object api/nblib/tests/CMakeFiles/nblib-integration-test.dir/simstate.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"api/nblib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/api/nblib/tests 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'/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem 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src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -MF CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/tests/mdmodulesnotifier.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -MF CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o.d -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/mdrunutility/tests/threadaffinity.cpp /usr/bin/gmake -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix 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/builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../bin/nblib-setup-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-setup-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-setup-test.dir/box.cpp.o" "CMakeFiles/nblib-setup-test.dir/interactions.cpp.o" "CMakeFiles/nblib-setup-test.dir/particletype.cpp.o" "CMakeFiles/nblib-setup-test.dir/pbcholder.cpp.o" "CMakeFiles/nblib-setup-test.dir/molecules.cpp.o" "CMakeFiles/nblib-setup-test.dir/nbnxmsetup.cpp.o" "CMakeFiles/nblib-setup-test.dir/topology.cpp.o" "CMakeFiles/nblib-setup-test.dir/virials.cpp.o" "CMakeFiles/nblib-setup-test.dir/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../bin/nblib-setup-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../lib/libtestutils.a ../../../lib/libmdrun_test_infrastructure.a ../../../lib/libnblib_test_infrastructure.a ../../../lib/libnblib_gmx.so.0.1.0 ../../../lib/libtestutils.a ../../../lib/libgmock.so.1.13.0 ../../../lib/libgtest.so.1.13.0 ../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/bin/gmake 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-I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects 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CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o" "CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o" "CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o" "CMakeFiles/commandline-test.dir/filenm.cpp.o" "CMakeFiles/commandline-test.dir/pargs.cpp.o" "CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/commandline-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 98%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o" "CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o" "CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 98%] Built target nblib-util-test [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/analysisdata/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/analysisdata/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o" "CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o" -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/angle.cpp [ 98%] Linking CXX executable ../../../../bin/nblib-listed-forces-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib-listed-forces-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/nblib-listed-forces-test.dir/bondtypes.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/gmxcalculator.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/helpers.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/listedtesthelpers.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/kernels.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/typetests.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/calculator.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/conversions.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/shiftforces.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/transformations.cpp.o" "CMakeFiles/nblib-listed-forces-test.dir/__/__/__/__/src/testutils/unittest_main.cpp.o" -o ../../../../bin/nblib-listed-forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libnblib_test_infrastructure.a ../../../../lib/libnblib_gmx.so.0.1.0 ../../../../lib/libtestutils.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [ 98%] Built target mdrunutility-test [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/distance.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target mdrunutility-mpi-test [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd 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src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/freevolume.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target nblib-setup-test /usr/bin/gmake -f api/nblib/CMakeFiles/nblib-tests.dir/build.make api/nblib/CMakeFiles/nblib-tests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/api/nblib /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/nblib 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/gyrate.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f api/nblib/CMakeFiles/nblib-tests.dir/build.make api/nblib/CMakeFiles/nblib-tests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib-tests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target nblib-tests [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem 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/usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/msd.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/pairdist.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target nblib-listed-forces-test [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem 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-c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/select.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include 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-fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/scattering.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target commandline-test [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/gromacs/trajectoryanalysis/tests/unionfind.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/g++ -DGMX_DOUBLE=0 -DGTEST_LANG_CXX11 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2024/src/testutils/include -I/builddir/build/BUILD/gromacs-2024/src/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2024/src -I/builddir/build/BUILD/gromacs-2024/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2024/api/legacy/include -I/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2024/src/external -isystem /builddir/build/BUILD/gromacs-2024/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2024/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2024/src/testutils/unittest_main.cpp gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target analysisdata-test [100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/dssp.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/gyrate.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/hbond.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/msd.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/scattering.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o" "CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o" ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/lib ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/14/libgomp.so /usr/lib64/libpthread.a ../../../../lib/libgmock.so.1.13.0 ../../../../lib/libgtest.so.1.13.0 gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target trajectoryanalysis-test /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/CMakeFiles/tests.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Built target tests /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024 /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build gmake[3]: Entering directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build Start 1: GmxapiExternalInterfaceTests 1/88 Test #1: GmxapiExternalInterfaceTests .............. Passed 1.43 sec Start 2: GmxapiInternalInterfaceTests 2/88 Test #2: GmxapiInternalInterfaceTests .............. Passed 0.45 sec Start 3: NbLibListedForcesTests 3/88 Test #3: NbLibListedForcesTests .................... Passed 0.04 sec Start 4: NbLibSamplesTestArgon 4/88 Test #4: NbLibSamplesTestArgon ..................... Passed 0.02 sec Start 5: NbLibSamplesTestMethaneWater 5/88 Test #5: NbLibSamplesTestMethaneWater .............. Passed 0.02 sec Start 6: NbLibUtilTests 6/88 Test #6: NbLibUtilTests ............................ Passed 0.02 sec Start 7: NbLibSetupTests 7/88 Test #7: NbLibSetupTests ........................... Passed 0.02 sec Start 8: NbLibTprTests 8/88 Test #8: NbLibTprTests ............................. Passed 0.03 sec Start 9: NbLibIntegrationTests 9/88 Test #9: NbLibIntegrationTests ..................... Passed 0.02 sec Start 10: NbLibIntegratorTests 10/88 Test #10: NbLibIntegratorTests ...................... Passed 0.02 sec Start 11: TestUtilsUnitTests 11/88 Test #11: TestUtilsUnitTests ........................ Passed 0.03 sec Start 12: TestUtilsMpiUnitTests 12/88 Test #12: TestUtilsMpiUnitTests ..................... Passed 0.02 sec Start 13: UtilityUnitTests 13/88 Test #13: UtilityUnitTests .......................... Passed 0.03 sec Start 14: UtilityMpiUnitTests 14/88 Test #14: UtilityMpiUnitTests ....................... Passed 0.02 sec Start 15: GmxlibTests 15/88 Test #15: GmxlibTests ............................... Passed 0.03 sec Start 16: MdlibUnitTest 16/88 Test #16: MdlibUnitTest ............................. Passed 0.17 sec Start 17: AwhTest 17/88 Test #17: AwhTest ................................... Passed 0.06 sec Start 18: DensityFittingAppliedForcesUnitTest 18/88 Test #18: DensityFittingAppliedForcesUnitTest ....... Passed 0.02 sec Start 19: QMMMAppliedForcesUnitTest 19/88 Test #19: QMMMAppliedForcesUnitTest ................. Passed 0.06 sec Start 20: ColvarsAppliedForcesUnitTest 20/88 Test #20: ColvarsAppliedForcesUnitTest .............. Passed 0.09 sec Start 21: AppliedForcesUnitTest 21/88 Test #21: AppliedForcesUnitTest ..................... Passed 0.02 sec Start 22: ListedForcesTest 22/88 Test #22: ListedForcesTest .......................... Passed 0.04 sec Start 23: NbnxmTests 23/88 Test #23: NbnxmTests ................................ Passed 0.46 sec Start 24: CommandLineUnitTests 24/88 Test #24: CommandLineUnitTests ...................... Passed 0.02 sec Start 25: DomDecTests 25/88 Test #25: DomDecTests ............................... Passed 0.02 sec Start 26: DomDecMpiTests 26/88 Test #26: DomDecMpiTests ............................ Passed 0.02 sec Start 27: EwaldUnitTests 27/88 Test #27: EwaldUnitTests ............................ Passed 0.17 sec Start 28: FFTUnitTests 28/88 Test #28: FFTUnitTests .............................. Passed 0.04 sec Start 29: GpuUtilsUnitTests 29/88 Test #29: GpuUtilsUnitTests ......................... Passed 0.02 sec Start 30: HardwareUnitTests 30/88 Test #30: HardwareUnitTests ......................... Passed 0.04 sec Start 31: MathUnitTests 31/88 Test #31: MathUnitTests ............................. Passed 0.07 sec Start 32: MdrunUtilityUnitTests 32/88 Test #32: MdrunUtilityUnitTests ..................... Passed 0.02 sec Start 33: MdrunUtilityMpiUnitTests 33/88 Test #33: MdrunUtilityMpiUnitTests .................. Passed 0.03 sec Start 34: MDSpanTests 34/88 Test #34: MDSpanTests ............................... Passed 0.02 sec Start 35: MdtypesUnitTest 35/88 Test #35: MdtypesUnitTest ........................... Passed 0.03 sec Start 36: OnlineHelpUnitTests 36/88 Test #36: OnlineHelpUnitTests ....................... Passed 0.02 sec Start 37: OptionsUnitTests 37/88 Test #37: OptionsUnitTests .......................... Passed 0.02 sec Start 38: PbcutilUnitTest 38/88 Test #38: PbcutilUnitTest ........................... Passed 0.02 sec Start 39: RandomUnitTests 39/88 Test #39: RandomUnitTests ........................... Passed 0.02 sec Start 40: RestraintTests 40/88 Test #40: RestraintTests ............................ Passed 0.02 sec Start 41: TableUnitTests 41/88 Test #41: TableUnitTests ............................ Passed 0.06 sec Start 42: TaskAssignmentUnitTests 42/88 Test #42: TaskAssignmentUnitTests ................... Passed 0.02 sec Start 43: GmxTimingTests 43/88 Test #43: GmxTimingTests ............................ Passed 0.02 sec Start 44: TopologyTest 44/88 Test #44: TopologyTest .............................. Passed 0.04 sec Start 45: PullTest 45/88 Test #45: PullTest .................................. Passed 0.02 sec Start 46: SimdUnitTests 46/88 Test #46: SimdUnitTests ............................. Passed 0.04 sec Start 47: CompatibilityHelpersTests 47/88 Test #47: CompatibilityHelpersTests ................. Passed 0.02 sec Start 48: GmxAnaTest 48/88 Test #48: GmxAnaTest ................................ Passed 0.75 sec Start 49: GmxPreprocessTests 49/88 Test #49: GmxPreprocessTests ........................ Passed 0.71 sec Start 50: Pdb2gmx1Test 50/88 Test #50: Pdb2gmx1Test .............................. Passed 0.82 sec Start 51: Pdb2gmx2Test 51/88 Test #51: Pdb2gmx2Test .............................. Passed 1.06 sec Start 52: Pdb2gmx3Test 52/88 Test #52: Pdb2gmx3Test .............................. Passed 1.52 sec Start 53: CorrelationsTest 53/88 Test #53: CorrelationsTest .......................... Passed 0.14 sec Start 54: AnalysisDataUnitTests 54/88 Test #54: AnalysisDataUnitTests ..................... Passed 0.04 sec Start 55: CoordinateIOTests 55/88 Test #55: CoordinateIOTests ......................... Passed 0.06 sec Start 56: TrajectoryAnalysisUnitTests 56/88 Test #56: TrajectoryAnalysisUnitTests ............... Passed 5.47 sec Start 57: EnergyAnalysisUnitTests 57/88 Test #57: EnergyAnalysisUnitTests ................... Passed 0.06 sec Start 58: ToolUnitTests 58/88 Test #58: ToolUnitTests ............................. Passed 1.43 sec Start 59: FileIOTests 59/88 Test #59: FileIOTests ............................... Passed 0.03 sec Start 60: SelectionUnitTests 60/88 Test #60: SelectionUnitTests ........................ Passed 0.13 sec Start 61: MdrunOutputTests 61/88 Test #61: MdrunOutputTests .......................... Passed 0.11 sec Start 62: MdrunModulesTests 62/88 Test #62: MdrunModulesTests ......................... Passed 0.22 sec Start 63: MdrunIOTests 63/88 Test #63: MdrunIOTests .............................. Passed 0.15 sec Start 64: MdrunTestsOneRank 64/88 Test #64: MdrunTestsOneRank ......................... Passed 1.33 sec Start 65: MdrunTestsTwoRanks 65/88 Test #65: MdrunTestsTwoRanks ........................ Passed 1.31 sec Start 66: MdrunSingleRankAlgorithmsTests 66/88 Test #66: MdrunSingleRankAlgorithmsTests ............ Passed 0.94 sec Start 67: MdrunNonIntegratorTests 67/88 Test #67: MdrunNonIntegratorTests ................... Passed 0.78 sec Start 68: MdrunTpiTests 68/88 Test #68: MdrunTpiTests ............................. Passed 0.47 sec Start 69: MdrunMpiTests 69/88 Test #69: MdrunMpiTests ............................. Passed 1.06 sec Start 70: MdrunMultiSimTests 70/88 Test #70: MdrunMultiSimTests ........................ Passed 0.02 sec Start 71: MdrunMultiSimReplexTests 71/88 Test #71: MdrunMultiSimReplexTests .................. Passed 0.02 sec Start 72: MdrunMultiSimReplexEquivalenceTests 72/88 Test #72: MdrunMultiSimReplexEquivalenceTests ....... Passed 0.02 sec Start 73: MdrunMpi1RankPmeTests 73/88 Test #73: MdrunMpi1RankPmeTests ..................... Passed 0.45 sec Start 74: MdrunMpi2RankPmeTests 74/88 Test #74: MdrunMpi2RankPmeTests ..................... Passed 0.71 sec Start 75: MdrunCoordinationBasicTests1Rank 75/88 Test #75: MdrunCoordinationBasicTests1Rank .......... Passed 0.02 sec Start 76: MdrunCoordinationBasicTests2Ranks 76/88 Test #76: MdrunCoordinationBasicTests2Ranks ......... Passed 0.02 sec Start 77: MdrunCoordinationCouplingTests1Rank 77/88 Test #77: MdrunCoordinationCouplingTests1Rank ....... Passed 0.02 sec Start 78: MdrunCoordinationCouplingTests2Ranks 78/88 Test #78: MdrunCoordinationCouplingTests2Ranks ...... Passed 0.02 sec Start 79: MdrunCoordinationConstraintsTests1Rank 79/88 Test #79: MdrunCoordinationConstraintsTests1Rank .... Passed 0.02 sec Start 80: MdrunCoordinationConstraintsTests2Ranks 80/88 Test #80: MdrunCoordinationConstraintsTests2Ranks ... Passed 0.02 sec Start 81: MdrunFEPTests 81/88 Test #81: MdrunFEPTests ............................. Passed 0.02 sec Start 82: MdrunPullTests 82/88 Test #82: MdrunPullTests ............................ Passed 0.97 sec Start 83: MdrunRotationTests 83/88 Test #83: MdrunRotationTests ........................ Passed 0.14 sec Start 84: MdrunSimulatorComparison 84/88 Test #84: MdrunSimulatorComparison .................. Passed 0.02 sec Start 85: MdrunVirtualSiteTests 85/88 Test #85: MdrunVirtualSiteTests ..................... Passed 0.28 sec Start 86: regressiontests/complex 86/88 Test #86: regressiontests/complex ................... Passed 24.55 sec Start 87: regressiontests/freeenergy 87/88 Test #87: regressiontests/freeenergy ................***Failed 20.79 sec FAILED. Check checkpot.out (2 errors), checkforce.out (758 errors) file(s) in relative for relative 1 out of 10 freeenergy tests FAILED Start 88: regressiontests/essentialdynamics 88/88 Test #88: regressiontests/essentialdynamics ......... Passed 1.65 sec 99% tests passed, 1 tests failed out of 88 Label Time Summary: GTest = 25.26 sec*proc (83 tests) IntegrationTest = 11.77 sec*proc (26 tests) MpiTest = 5.41 sec*proc (19 tests) QuickGpuTest = 5.65 sec*proc (18 tests) SlowGpuTest = 52.79 sec*proc (17 tests) SlowTest = 11.15 sec*proc (13 tests) UnitTest = 2.33 sec*proc (44 tests) Total Test time (real) = 72.36 sec The following tests FAILED: 87 - regressiontests/freeenergy (Failed) Errors while running CTest gmake[3]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[3]: *** [CMakeFiles/run-ctest-nophys.dir/build.make:74: CMakeFiles/run-ctest-nophys] Error 8 gmake[2]: *** [CMakeFiles/Makefile2:3280: CMakeFiles/run-ctest-nophys.dir/all] Error 2 gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2024/serial/redhat-linux-build' gmake[1]: *** [CMakeFiles/Makefile2:3313: CMakeFiles/check.dir/rule] Error 2 gmake: *** [Makefile:631: check] Error 2 RPM build errors: error: Bad exit status from /var/tmp/rpm-tmp.ZAGvfs (%check) Bad exit status from /var/tmp/rpm-tmp.ZAGvfs (%check) Child return code was: 1 EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M 46757193a00c4775bf9c274887fc42db -D /var/lib/mock/f41-build-50458170-6038590/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.4g374tqa:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin \'--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"\' \'--setenv=PS1= \\s-\\v\\$ \' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c \'/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/gromacs.spec\'\n', 1)] Traceback (most recent call last): File "/usr/lib/python3.12/site-packages/mockbuild/trace_decorator.py", line 93, in trace result = func(*args, **kw) ^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/site-packages/mockbuild/util.py", line 612, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (cmd_pretty(command, env), output), child.returncode) mockbuild.exception.Error: Command failed: # /usr/bin/systemd-nspawn -q -M 46757193a00c4775bf9c274887fc42db -D /var/lib/mock/f41-build-50458170-6038590/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.4g374tqa:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/gromacs.spec'