Mock Version: 6.0
Mock Version: 6.0
Mock Version: 6.0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f43-build-57049497-6548100/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffabfb9370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '07afd9d47bb4480aba7ea42a38472987', '-D', '/var/lib/mock/f43-build-57049497-6548100/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1738627200
Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc43.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target aarch64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f43-build-57049497-6548100/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffabfb9370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3031b810ed1843e3993e1532737d0589', '-D', '/var/lib/mock/f43-build-57049497-6548100/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target aarch64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1738627200
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.G3kBK3
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ test -d /builddir/build/BUILD/libsonata-0.1.29-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libsonata-0.1.29-build
+ /usr/bin/rm -rf /builddir/build/BUILD/libsonata-0.1.29-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.laoxlh
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ rm -rf libsonata-0.1.29
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.29.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd libsonata-0.1.29
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/git init -q
+ /usr/bin/git config user.name rpm-build
+ /usr/bin/git config user.email '<rpm-build>'
+ /usr/bin/git config gc.auto 0
+ /usr/bin/git add --force .
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q --allow-empty -a --author 'rpm-build <rpm-build>' -m 'libsonata-0.1.29 base'
+ /usr/bin/git checkout --track -b rpm-build
Switched to a new branch 'rpm-build'
branch 'rpm-build' set up to track 'master'.
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Remove-pybind-redeclarations.patch
+ /usr/bin/git apply --index --reject -
Checking patch python/bindings.cpp...
Applied patch python/bindings.cpp cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0001-Remove-pybind-redeclarations.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-Use-std-filesystem.patch
+ /usr/bin/git apply --index --reject -
Checking patch CMakeLists.txt...
Checking patch extlib/filesystem.hpp...
Checking patch src/config.cpp...
Checking patch src/node_sets.cpp...
Checking patch src/utils.cpp...
Applied patch CMakeLists.txt cleanly.
Applied patch extlib/filesystem.hpp cleanly.
Applied patch src/config.cpp cleanly.
Applied patch src/node_sets.cpp cleanly.
Applied patch src/utils.cpp cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0002-Use-std-filesystem.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Substitute-ghc-in-tests.patch
+ /usr/bin/git apply --index --reject -
Checking patch tests/test_config.cpp...
Applied patch tests/test_config.cpp cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0003-Substitute-ghc-in-tests.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-Include-catch-catch_all.hpp-instead-of-catch-catch.h.patch
+ /usr/bin/git apply --index --reject -
Checking patch tests/main.cpp...
Checking patch tests/test_config.cpp...
Checking patch tests/test_edges.cpp...
Checking patch tests/test_node_sets.cpp...
Checking patch tests/test_nodes.cpp...
Checking patch tests/test_report_reader.cpp...
Checking patch tests/test_selection.cpp...
Applied patch tests/main.cpp cleanly.
Applied patch tests/test_config.cpp cleanly.
Applied patch tests/test_edges.cpp cleanly.
Applied patch tests/test_node_sets.cpp cleanly.
Applied patch tests/test_nodes.cpp cleanly.
Applied patch tests/test_report_reader.cpp cleanly.
Applied patch tests/test_selection.cpp cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0004-Include-catch-catch_all.hpp-instead-of-catch-catch.h.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-Link-Catch2-Catch2WithMain-instead-of-Catch2-Catch2.patch
+ /usr/bin/git apply --index --reject -
Checking patch tests/CMakeLists.txt...
Applied patch tests/CMakeLists.txt cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0005-Link-Catch2-Catch2WithMain-instead-of-Catch2-Catch2.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/1.patch
+ /usr/bin/git apply --index --reject -
Checking patch CMakeLists.txt...
Applied patch CMakeLists.txt cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 1.patch --author 'rpm-build <rpm-build>'
+ rm -rf libsonata.egg-info
+ rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann
+ echo '#include <ghc/filesystem.hpp>'
+ echo '#include <nonstd/optional.hpp>'
+ echo '#include <nonstd/variant.hpp>'
+ sed -r -i 's/(-DEXTLIB_FROM_SUBMODULES=)ON/\1OFF/' setup.py
+ tomcli set pyproject.toml lists replace build-system.requires oldest-supported-numpy numpy
+ pushd tests/data
~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/data ~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29
+ rm nodes1.h5 edges1.h5 spikes.h5 somas.h5 elements.h5
+ popd
~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.bu7ywA
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ cd libsonata-0.1.29
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-buildrequires
Handling cmake from build-system.requires
Requirement not satisfied: cmake
Handling numpy from build-system.requires
Requirement satisfied: numpy
   (installed: numpy 2.2.2)
Handling setuptools from build-system.requires
Requirement not satisfied: setuptools
Handling wheel from build-system.requires
Requirement not satisfied: wheel
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc43.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target aarch64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f43-build-57049497-6548100/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffabfb9370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '514ea74b80e34dcc8c2949a9eaccc5bb', '-D', '/var/lib/mock/f43-build-57049497-6548100/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target aarch64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1738627200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Elrv4X
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ cd libsonata-0.1.29
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-buildrequires
Handling cmake from build-system.requires
Requirement satisfied: cmake
   (installed: cmake 3.31.5)
Handling numpy from build-system.requires
Requirement satisfied: numpy
   (installed: numpy 2.2.2)
Handling setuptools from build-system.requires
Requirement satisfied: setuptools
   (installed: setuptools 74.1.3)
Handling wheel from build-system.requires
Requirement satisfied: wheel
   (installed: wheel 0.45.1)
Handling setuptools_scm from get_requires_for_build_wheel
Requirement not satisfied: setuptools_scm
Exiting dependency generation pass: get_requires_for_build_wheel
+ cat /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc43.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target aarch64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f43-build-57049497-6548100/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffabfb9370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '5f84427c14e94253bde8886001debe3e', '-D', '/var/lib/mock/f43-build-57049497-6548100/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target aarch64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1738627200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.zni7cx
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ cd libsonata-0.1.29
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-buildrequires
Handling cmake from build-system.requires
Requirement satisfied: cmake
   (installed: cmake 3.31.5)
Handling numpy from build-system.requires
Requirement satisfied: numpy
   (installed: numpy 2.2.2)
Handling setuptools from build-system.requires
Requirement satisfied: setuptools
   (installed: setuptools 74.1.3)
Handling wheel from build-system.requires
Requirement satisfied: wheel
   (installed: wheel 0.45.1)
Handling setuptools_scm from get_requires_for_build_wheel
Requirement satisfied: setuptools_scm
   (installed: setuptools_scm 8.1.0)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
  File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
    section = defn.get("tool", {})[tool_name]
              ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
KeyError: 'setuptools_scm'
running dist_info
creating libsonata.egg-info
writing libsonata.egg-info/PKG-INFO
writing dependency_links to libsonata.egg-info/dependency_links.txt
writing requirements to libsonata.egg-info/requires.txt
writing top-level names to libsonata.egg-info/top_level.txt
writing manifest file 'libsonata.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'extlib/nlohmann/json.hpp'
warning: no files found matching '*' under directory 'extlib/fmt/include'
warning: no files found matching '*' under directory 'extlib/fmt/src'
warning: no files found matching '*' under directory 'extlib/fmt/support/cmake'
warning: no files found matching 'extlib/fmt/CMakeLists.txt'
warning: no files found matching 'extlib/fmt/*.rst'
warning: no files found matching 'extlib/fmt/README.md'
warning: no files found matching 'extlib/fmt/ChangeLog.md'
warning: no files found matching '*' under directory 'extlib/HighFive/include'
warning: no files found matching 'extlib/HighFive/CMakeLists.txt'
warning: no files found matching 'extlib/HighFive/LICENSE'
warning: no files found matching '*' under directory 'python/pybind11/include'
warning: no files found matching '*.cmake' under directory 'python/pybind11/tools'
warning: no files found matching 'python/pybind11/CMakeLists.txt'
warning: no files found matching 'python/pybind11/LICENSE'
adding license file 'COPYING'
adding license file 'COPYING.LESSER'
adding license file 'AUTHORS.txt'
writing manifest file 'libsonata.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/libsonata-0.1.dev7.dist-info'
Handling numpy>=1.17.3 from hook generated metadata: Requires-Dist (libsonata)
Requirement satisfied: numpy>=1.17.3
   (installed: numpy 2.2.2)
Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (libsonata)
Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs"
+ cat /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-buildrequires
+ rm -rfv libsonata-0.1.dev7.dist-info/
removed 'libsonata-0.1.dev7.dist-info/top_level.txt'
removed 'libsonata-0.1.dev7.dist-info/METADATA'
removed 'libsonata-0.1.dev7.dist-info/COPYING'
removed 'libsonata-0.1.dev7.dist-info/COPYING.LESSER'
removed 'libsonata-0.1.dev7.dist-info/AUTHORS.txt'
removed directory 'libsonata-0.1.dev7.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc43.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target aarch64 /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f43-build-57049497-6548100/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffabfb9370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '959373fb75134c85875a8d3f5a98bf78', '-D', '/var/lib/mock/f43-build-57049497-6548100/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.y6al9gwt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target aarch64 /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1738627200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ApV1ZU
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ cd libsonata-0.1.29
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-buildrequires
Handling cmake from build-system.requires
Requirement satisfied: cmake
   (installed: cmake 3.31.5)
Handling numpy from build-system.requires
Requirement satisfied: numpy
   (installed: numpy 2.2.2)
Handling setuptools from build-system.requires
Requirement satisfied: setuptools
   (installed: setuptools 74.1.3)
Handling wheel from build-system.requires
Requirement satisfied: wheel
   (installed: wheel 0.45.1)
Handling setuptools_scm from get_requires_for_build_wheel
Requirement satisfied: setuptools_scm
   (installed: setuptools_scm 8.1.0)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
  File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
    section = defn.get("tool", {})[tool_name]
              ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
KeyError: 'setuptools_scm'
running dist_info
writing libsonata.egg-info/PKG-INFO
writing dependency_links to libsonata.egg-info/dependency_links.txt
writing requirements to libsonata.egg-info/requires.txt
writing top-level names to libsonata.egg-info/top_level.txt
reading manifest template 'MANIFEST.in'
warning: no files found matching 'extlib/nlohmann/json.hpp'
warning: no files found matching '*' under directory 'extlib/fmt/include'
warning: no files found matching '*' under directory 'extlib/fmt/src'
warning: no files found matching '*' under directory 'extlib/fmt/support/cmake'
warning: no files found matching 'extlib/fmt/CMakeLists.txt'
warning: no files found matching 'extlib/fmt/*.rst'
warning: no files found matching 'extlib/fmt/README.md'
warning: no files found matching 'extlib/fmt/ChangeLog.md'
warning: no files found matching '*' under directory 'extlib/HighFive/include'
warning: no files found matching 'extlib/HighFive/CMakeLists.txt'
warning: no files found matching 'extlib/HighFive/LICENSE'
warning: no files found matching '*' under directory 'python/pybind11/include'
warning: no files found matching '*.cmake' under directory 'python/pybind11/tools'
warning: no files found matching 'python/pybind11/CMakeLists.txt'
warning: no files found matching 'python/pybind11/LICENSE'
adding license file 'COPYING'
adding license file 'COPYING.LESSER'
adding license file 'AUTHORS.txt'
writing manifest file 'libsonata.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/libsonata-0.1.dev7.dist-info'
Handling numpy>=1.17.3 from hook generated metadata: Requires-Dist (libsonata)
Requirement satisfied: numpy>=1.17.3
   (installed: numpy 2.2.2)
Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (libsonata)
Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs"
+ cat /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-buildrequires
+ rm -rfv libsonata-0.1.dev7.dist-info/
removed 'libsonata-0.1.dev7.dist-info/top_level.txt'
removed 'libsonata-0.1.dev7.dist-info/METADATA'
removed 'libsonata-0.1.dev7.dist-info/COPYING'
removed 'libsonata-0.1.dev7.dist-info/COPYING.LESSER'
removed 'libsonata-0.1.dev7.dist-info/AUTHORS.txt'
removed directory 'libsonata-0.1.dev7.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.9XYHLH
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd libsonata-0.1.29
+ export CMAKE_GENERATOR=Ninja
+ CMAKE_GENERATOR=Ninja
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DEXTLIB_FROM_SUBMODULES:BOOL=OFF -DSONATA_CXX_WARNINGS:BOOL=OFF -DSONATA_PYTHON:BOOL=OFF -DSONATA_TESTS:BOOL=ON -DSONATA_VERSION=0.1.29
-- The C compiler identification is GNU 15.0.1
-- The CXX compiler identification is GNU 15.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO)
-- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5")
CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.
Call Stack (most recent call first):
  /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include)
  CMakeLists.txt:83 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.
-- Found Boost: /usr/include (found version "1.83.0") found components: system serialization
-- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3")
-- Configuring done (1.6s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_VERBOSE_MAKEFILE
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build
+ /usr/bin/cmake --build redhat-linux-build -j12 --verbose
Change Dir: '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build'
Run Build Command(s): /usr/bin/ninja-build -v -j 12
[1/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/hdf5_mutex.cpp
[2/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/common.cpp.o -MF CMakeFiles/sonata_shared.dir/src/common.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/common.cpp
[3/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/version.cpp.o -MF CMakeFiles/sonata_shared.dir/src/version.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build/src/version.cpp
[4/37] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/common.cpp
[5/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/utils.cpp.o -MF CMakeFiles/sonata_shared.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/utils.cpp
[6/37] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_static.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/edge_index.cpp
[7/37] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/hdf5_mutex.cpp
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[18/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF tests/CMakeFiles/unittests.dir/main.cpp.o.d -o tests/CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/main.cpp
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[21/37] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/selection.cpp.o -MF CMakeFiles/sonata_static.dir/src/selection.cpp.o.d -o CMakeFiles/sonata_static.dir/src/selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/selection.cpp
[22/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -MF tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_node_sets.cpp
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[24/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_selection.cpp.o -MF tests/CMakeFiles/unittests.dir/test_selection.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_selection.cpp
[25/37] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/population.cpp
[26/37] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_static.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/node_sets.cpp
[27/37] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_static.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_static.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/nodes.cpp
[28/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_report_reader.cpp
In file included from /usr/include/catch2/benchmark/catch_benchmark.hpp:14,
                 from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24,
                 from /usr/include/catch2/catch_all.hpp:25,
                 from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_report_reader.cpp:1:
/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_report_reader.cpp: In function ‘void testTimes(const std::vector<double>&, double, double, int)’:
/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
    8 |     REQUIRE(size == vec.size());
      |             ~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
    9 |     for (int i = 0; i < vec.size(); ++i) {
      |                     ~~^~~~~~~~~~~~
[29/37] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/report_reader.cpp
[30/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -MF tests/CMakeFiles/unittests.dir/test_nodes.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_nodes.cpp
[31/37] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/config.cpp
[32/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/config.cpp.o -MF CMakeFiles/sonata_shared.dir/src/config.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/config.cpp
[33/37] : && /usr/bin/cmake -E rm -f libsonata.a && /usr/bin/ar qc libsonata.a  CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_reader.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/selection.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o && /usr/bin/ranlib libsonata.a && :
[34/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF tests/CMakeFiles/unittests.dir/test_config.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp
In file included from /usr/include/catch2/catch_test_macros.hpp:11,
                 from /usr/include/catch2/catch_template_test_macros.hpp:20,
                 from /usr/include/catch2/catch_all.hpp:37,
                 from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp:1:
/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp: In function ‘void CATCH2_INTERNAL_TEST_0()’:
/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp:50:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass> nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string<char>&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector<unsigned char>; CustomBaseClass = void; parser_callback_t = std::function<bool(int, nlohmann::json_abi_v3_11_3::detail::parse_event_t, nlohmann::json_abi_v3_11_3::basic_json<>&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result]
   50 |         CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON()));
      |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp:3:
/usr/include/nlohmann/json.hpp:4015:23: note: declared here
 4015 |     static basic_json parse(InputType&& i,
      |                       ^~~~~
/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp: In function ‘void CATCH2_INTERNAL_TEST_5()’:
/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp:389:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass> nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string<char>&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector<unsigned char>; CustomBaseClass = void; parser_callback_t = std::function<bool(int, nlohmann::json_abi_v3_11_3::detail::parse_event_t, nlohmann::json_abi_v3_11_3::basic_json<>&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result]
  389 |         CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON()));
      |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/nlohmann/json.hpp:4015:23: note: declared here
 4015 |     static basic_json parse(InputType&& i,
      |                       ^~~~~
[35/37] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -Wl,--dependency-file=CMakeFiles/sonata_shared.dir/link.d -shared -Wl,-soname,libsonata.so.0.1 -o libsonata.so.0.1.29 CMakeFiles/sonata_shared.dir/src/common.cpp.o CMakeFiles/sonata_shared.dir/src/config.cpp.o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o CMakeFiles/sonata_shared.dir/src/edges.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_reader.cpp.o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o CMakeFiles/sonata_shared.dir/src/population.cpp.o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o CMakeFiles/sonata_shared.dir/src/selection.cpp.o CMakeFiles/sonata_shared.dir/src/utils.cpp.o CMakeFiles/sonata_shared.dir/src/version.cpp.o  /usr/lib64/libhdf5.so && :
/usr/lib64/libhdf5.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
[36/37] /usr/bin/cmake -E cmake_symlink_library libsonata.so.0.1.29  libsonata.so.0.1 libsonata.so && :
[37/37] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes    -Wl,--dependency-file=tests/CMakeFiles/unittests.dir/link.d tests/CMakeFiles/unittests.dir/main.cpp.o tests/CMakeFiles/unittests.dir/test_config.cpp.o tests/CMakeFiles/unittests.dir/test_edges.cpp.o tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o tests/CMakeFiles/unittests.dir/test_nodes.cpp.o tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o tests/CMakeFiles/unittests.dir/test_selection.cpp.o -o tests/unittests  -Wl,-rpath,/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build  libsonata.so.0.1.29  /usr/lib64/libCatch2Main.so.3.8.0  /usr/lib64/libhdf5.so  /usr/lib64/libCatch2.so.3.8.0 && cd /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D "TEST_PROPERTIES=SKIP_RETURN_CODE;4" -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D TEST_DL_PATHS= -D TEST_DL_FRAMEWORK_PATHS= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build/tests/unittests-b12d07c_tests.cmake -D ADD_TAGS_AS_LABELS=FALSE -P /usr/lib64/cmake/Catch2/CatchAddTests.cmake
/usr/lib64/libCatch2Main.so.3.8.0: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
/usr/lib64/libhdf5.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
/usr/lib64/libCatch2.so.3.8.0: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
+ export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.29
+ SETUPTOOLS_SCM_PRETEND_VERSION=0.1.29
+ export SONATA_BUILD_TYPE=RelWithDebInfo
+ SONATA_BUILD_TYPE=RelWithDebInfo
+ export VERBOSE=
+ VERBOSE=
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir
Processing /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
  Traceback (most recent call last):
    File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
      section = defn.get("tool", {})[tool_name]
                ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
  KeyError: 'setuptools_scm'
  running dist_info
  creating /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-tvsqo09u/libsonata.egg-info
  writing /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-tvsqo09u/libsonata.egg-info/PKG-INFO
  writing dependency_links to /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-tvsqo09u/libsonata.egg-info/dependency_links.txt
  writing requirements to /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-tvsqo09u/libsonata.egg-info/requires.txt
  writing top-level names to /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-tvsqo09u/libsonata.egg-info/top_level.txt
  writing manifest file '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-tvsqo09u/libsonata.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'extlib/nlohmann/json.hpp'
  warning: no files found matching '*' under directory 'extlib/fmt/include'
  warning: no files found matching '*' under directory 'extlib/fmt/src'
  warning: no files found matching '*' under directory 'extlib/fmt/support/cmake'
  warning: no files found matching 'extlib/fmt/CMakeLists.txt'
  warning: no files found matching 'extlib/fmt/*.rst'
  warning: no files found matching 'extlib/fmt/README.md'
  warning: no files found matching 'extlib/fmt/ChangeLog.md'
  warning: no files found matching '*' under directory 'extlib/HighFive/include'
  warning: no files found matching 'extlib/HighFive/CMakeLists.txt'
  warning: no files found matching 'extlib/HighFive/LICENSE'
  warning: no files found matching '*' under directory 'python/pybind11/include'
  warning: no files found matching '*.cmake' under directory 'python/pybind11/tools'
  warning: no files found matching 'python/pybind11/CMakeLists.txt'
  warning: no files found matching 'python/pybind11/LICENSE'
  adding license file 'COPYING'
  adding license file 'COPYING.LESSER'
  adding license file 'AUTHORS.txt'
  writing manifest file '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-tvsqo09u/libsonata.egg-info/SOURCES.txt'
  creating '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-tvsqo09u/libsonata-0.1.29.dist-info'
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: libsonata
  Building wheel for libsonata (pyproject.toml): started
  Running command Building wheel for libsonata (pyproject.toml)
  WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
  Traceback (most recent call last):
    File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
      section = defn.get("tool", {})[tool_name]
                ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
  KeyError: 'setuptools_scm'
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-aarch64-cpython-313
  creating build/lib.linux-aarch64-cpython-313/libsonata
  copying python/libsonata/__init__.py -> build/lib.linux-aarch64-cpython-313/libsonata
  running build_ext
  Re-run cmake no build system arguments
  -- The C compiler identification is GNU 15.0.1
  -- The CXX compiler identification is GNU 15.0.1
  -- Detecting C compiler ABI info
  -- Detecting C compiler ABI info - done
  -- Check for working C compiler: /usr/bin/gcc - skipped
  -- Detecting C compile features
  -- Detecting C compile features - done
  -- Detecting CXX compiler ABI info
  -- Detecting CXX compiler ABI info - done
  -- Check for working CXX compiler: /usr/bin/g++ - skipped
  -- Detecting CXX compile features
  -- Detecting CXX compile features - done
  -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO)
  -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5")
  CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package):
    Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
    --help-policy CMP0167" for policy details.  Use the cmake_policy command to
    set the policy and suppress this warning.
  Call Stack (most recent call first):
    /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include)
    CMakeLists.txt:83 (find_package)
  This warning is for project developers.  Use -Wno-dev to suppress it.
  -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization
  -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3")
  CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message):
    Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
    are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
    the cmake_policy command to set the policy and suppress this warning, or
    preferably upgrade to using FindPython, either by calling it explicitly
    before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11.
  Call Stack (most recent call first):
    /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package)
    /usr/share/cmake/pybind11/pybind11Common.cmake:228 (include)
    /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include)
    python/CMakeLists.txt:6 (find_package)
  This warning is for project developers.  Use -Wno-dev to suppress it.
  -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.2", minimum required is "3.7")
  -- Found PythonLibs: /usr/lib64/libpython3.13.so
  -- Performing Test HAS_FLTO
  -- Performing Test HAS_FLTO - Success
  -- Found pybind11: /usr/include (found version "2.13.6")
  -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets
  -- Configuring done (1.8s)
  -- Generating done (0.0s)
  -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/build/temp.linux-aarch64-cpython-313
  Change Dir: '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/build/temp.linux-aarch64-cpython-313'
  Run Build Command(s): /usr/bin/ninja-build -v -j12 sonata_python
  [1/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/hdf5_mutex.cpp
  [2/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/common.cpp
  [3/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/version.cpp.o -MF CMakeFiles/sonata_static.dir/src/version.cpp.o.d -o CMakeFiles/sonata_static.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/build/temp.linux-aarch64-cpython-313/src/version.cpp
  [4/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/utils.cpp
  [5/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_static.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/edge_index.cpp
  [6/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/selection.cpp.o -MF CMakeFiles/sonata_static.dir/src/selection.cpp.o.d -o CMakeFiles/sonata_static.dir/src/selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/selection.cpp
  [7/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/hdf5_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/hdf5_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/hdf5_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/hdf5_reader.cpp
  [8/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edges.cpp.o -MF CMakeFiles/sonata_static.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/edges.cpp
  [9/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/population.cpp
  [10/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/report_reader.cpp
  [11/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_static.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_static.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/nodes.cpp
  [12/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_static.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/node_sets.cpp
  [13/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/config.cpp
  [14/16] : && /usr/bin/cmake -E rm -f libsonata.a && /usr/bin/ar qc libsonata.a  CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_reader.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/selection.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o && /usr/bin/ranlib libsonata.a && :
  [15/16] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF python/CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o python/CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/python/bindings.cpp
  /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/python/bindings.cpp: In lambda function:
  /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/python/bindings.cpp:429:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘pybind11::ssize_t’ {aka ‘long int’} [-Wsign-compare]
    429 |                  for (size_t i = 0; i < raw.shape(0); ++i) {
        |                                     ~~^~~~~~~~~~~~~~
  In file included from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/hdf5_reader.h:6,
                   from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/population.h:22,
                   from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/edges.h:13,
                   from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/config.h:19,
                   from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/python/bindings.cpp:6:
  /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/selection.h: In instantiation of ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long int*]’:
  /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/python/bindings.cpp:435:46:   required from here
    435 |                  return Selection::fromValues(raw.data(0), raw.data(raw.shape(0)));
        |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/selection.h:60:15: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘long unsigned int’ [-Wsign-compare]
     60 |         if (v == std::get<1>(range)) {
        |             ~~^~~~~~~~~~~~~~~~~~~~~
  [16/16] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -Wl,--dependency-file=python/CMakeFiles/sonata_python.dir/link.d -shared  -o /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/build/lib.linux-aarch64-cpython-313/libsonata/_libsonata.cpython-313-aarch64-linux-gnu.so python/CMakeFiles/sonata_python.dir/bindings.cpp.o  libsonata.a  /usr/lib64/libhdf5.so && :
  /usr/lib64/libhdf5.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
  installing to build/bdist.linux-aarch64/wheel
  running install
  running install_lib
  creating build/bdist.linux-aarch64
  creating build/bdist.linux-aarch64/wheel
  creating build/bdist.linux-aarch64/wheel/libsonata
  copying build/lib.linux-aarch64-cpython-313/libsonata/__init__.py -> build/bdist.linux-aarch64/wheel/./libsonata
  copying build/lib.linux-aarch64-cpython-313/libsonata/_libsonata.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./libsonata
  running install_egg_info
  running egg_info
  creating python/libsonata.egg-info
  writing python/libsonata.egg-info/PKG-INFO
  writing dependency_links to python/libsonata.egg-info/dependency_links.txt
  writing requirements to python/libsonata.egg-info/requires.txt
  writing top-level names to python/libsonata.egg-info/top_level.txt
  writing manifest file 'python/libsonata.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'extlib/nlohmann/json.hpp'
  warning: no files found matching '*' under directory 'extlib/fmt/include'
  warning: no files found matching '*' under directory 'extlib/fmt/src'
  warning: no files found matching '*' under directory 'extlib/fmt/support/cmake'
  warning: no files found matching 'extlib/fmt/CMakeLists.txt'
  warning: no files found matching 'extlib/fmt/*.rst'
  warning: no files found matching 'extlib/fmt/README.md'
  warning: no files found matching 'extlib/fmt/ChangeLog.md'
  warning: no files found matching '*' under directory 'extlib/HighFive/include'
  warning: no files found matching 'extlib/HighFive/CMakeLists.txt'
  warning: no files found matching 'extlib/HighFive/LICENSE'
  warning: no files found matching '*' under directory 'python/pybind11/include'
  warning: no files found matching '*.cmake' under directory 'python/pybind11/tools'
  warning: no files found matching 'python/pybind11/CMakeLists.txt'
  warning: no files found matching 'python/pybind11/LICENSE'
  adding license file 'COPYING'
  adding license file 'COPYING.LESSER'
  adding license file 'AUTHORS.txt'
  writing manifest file 'python/libsonata.egg-info/SOURCES.txt'
  Copying python/libsonata.egg-info to build/bdist.linux-aarch64/wheel/./libsonata-0.1.29-py3.13.egg-info
  running install_scripts
  creating build/bdist.linux-aarch64/wheel/libsonata-0.1.29.dist-info/WHEEL
  creating '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-wheel-8zzq0ltj/.tmp-p00laegi/libsonata-0.1.29-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
  adding 'libsonata/__init__.py'
  adding 'libsonata/_libsonata.cpython-313-aarch64-linux-gnu.so'
  adding 'libsonata-0.1.29.dist-info/AUTHORS.txt'
  adding 'libsonata-0.1.29.dist-info/COPYING'
  adding 'libsonata-0.1.29.dist-info/COPYING.LESSER'
  adding 'libsonata-0.1.29.dist-info/METADATA'
  adding 'libsonata-0.1.29.dist-info/WHEEL'
  adding 'libsonata-0.1.29.dist-info/top_level.txt'
  adding 'libsonata-0.1.29.dist-info/RECORD'
  removing build/bdist.linux-aarch64/wheel
  Building wheel for libsonata (pyproject.toml): finished with status 'done'
  Created wheel for libsonata: filename=libsonata-0.1.29-cp313-cp313-linux_aarch64.whl size=10472138 sha256=7ec19a69cebab8c078620623325c6e9e637c631adcf4ac53ee217228d3fe836b
  Stored in directory: /builddir/.cache/pip/wheels/ca/a0/83/44387416232ce1a57e009216dc56a872696281c1874323f129
Successfully built libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.PKRrVY
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ '[' /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT
++ dirname /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build
+ mkdir /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd libsonata-0.1.29
+ DESTDIR=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT
+ /usr/bin/cmake --install redhat-linux-build
-- Install configuration: ""
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/libsonata.so.0.1.29
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/libsonata.so.0.1
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/libsonata.so
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/libsonata.a
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/common.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/config.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/edges.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/hdf5_reader.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/node_sets.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/nodes.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/optional.hpp
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/population.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/report_reader.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/selection.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/variant.hpp
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/sonata/CMake/sonata-config.cmake
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets.cmake
-- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets-noconfig.cmake
+ rm -rf /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT//usr/lib64/libsonata.a
++ ls /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir/libsonata-0.1.29-cp313-cp313-linux_aarch64.whl
++ xargs basename --multiple
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=libsonata==0.1.29
+ '[' -z libsonata==0.1.29 ']'
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir libsonata==0.1.29
Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13)
Looking in links: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir
Processing ./pyproject-wheeldir/libsonata-0.1.29-cp313-cp313-linux_aarch64.whl
Installing collected packages: libsonata
Successfully installed libsonata-0.1.29
+ '[' -d /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/bin ']'
+ rm -f /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' -d /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages ']'
+ site_dirs+=("/usr/lib64/python3.13/site-packages")
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT$site_dir/*.dist-info
+ echo '%ghost /usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT --record /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-record
+ rm -fv /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/RECORD
removed '/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/RECORD'
+ rm -fv /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/REQUESTED
removed '/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_FILES_ESCAPE=4.19
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-modules --buildroot /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc43.aarch64-pyproject-record --prefix /usr -l libsonata
+ /usr/bin/find-debuginfo -j12 --strict-build-id -m -i --build-id-seed 0.1.29-1.fc43 --unique-debug-suffix -0.1.29-1.fc43.aarch64 --unique-debug-src-base libsonata-0.1.29-1.fc43.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29
find-debuginfo: starting
Extracting debug info from 2 files
DWARF-compressing 2 files
sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/libsonata-0.1.29-1.fc43.aarch64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j12
Bytecompiling .py files below /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13 using python3.13
Bytecompiling .py files below /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j12 /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT
/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
Scanned 36 directories and 63 files,
               processed 1 inodes,
               1 modified (0 replaced + 1 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/libsonata-0.1.29-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.tU8h5O
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/data ~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd libsonata-0.1.29
+ pushd tests/data
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ PATH=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib/python3.13/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=12
+ /usr/bin/python3 generate.py
~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29
+ popd
+ /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j12 tests
Internal ctest changing into directory: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build
Test project /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build
      Start  1: Selection
      Start  2: SpikeReader
      Start  3: SomaReportReader limits
      Start  4: SomaReportReader
      Start  5: ElementReportReader limits
      Start  6: ElementReportReader
      Start  7: NodePopulation
      Start  8: NodePopulationMove
      Start  9: NodePopulationSelectAll
      Start 10: NodePopulationmatchAttributeValues
      Start 11: NodePopulationmatchAttributeValues - int8_t
      Start 12: NodePopulationmatchAttributeValues - uint8_t
 1/30 Test  #1: Selection .......................................   Passed    0.02 sec
 2/30 Test  #2: SpikeReader .....................................   Passed    0.02 sec
 3/30 Test  #3: SomaReportReader limits .........................   Passed    0.02 sec
 4/30 Test  #4: SomaReportReader ................................   Passed    0.02 sec
 5/30 Test  #5: ElementReportReader limits ......................   Passed    0.01 sec
 6/30 Test  #6: ElementReportReader .............................   Passed    0.01 sec
 7/30 Test  #8: NodePopulationMove ..............................   Passed    0.01 sec
      Start 13: NodePopulationmatchAttributeValues - int16_t
      Start 14: NodePopulationmatchAttributeValues - uint16_t
      Start 15: NodePopulationmatchAttributeValues - int32_t
      Start 16: NodePopulationmatchAttributeValues - uint32_t
      Start 17: NodePopulationmatchAttributeValues - int64_t
      Start 18: NodePopulationmatchAttributeValues - uint64_t
      Start 19: NodeSetParse
 8/30 Test  #7: NodePopulation ..................................   Passed    0.02 sec
 9/30 Test  #9: NodePopulationSelectAll .........................   Passed    0.02 sec
10/30 Test #10: NodePopulationmatchAttributeValues ..............   Passed    0.02 sec
11/30 Test #11: NodePopulationmatchAttributeValues - int8_t .....   Passed    0.02 sec
12/30 Test #12: NodePopulationmatchAttributeValues - uint8_t ....   Passed    0.02 sec
13/30 Test #13: NodePopulationmatchAttributeValues - int16_t ....   Passed    0.01 sec
14/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ...   Passed    0.01 sec
15/30 Test #15: NodePopulationmatchAttributeValues - int32_t ....   Passed    0.01 sec
      Start 20: NodeSetBasic
      Start 21: NodeSetCompound
      Start 22: NodeSet
      Start 23: EdgePopulation
      Start 24: EdgePopulationSelectAll
      Start 25: EdgePopulation::writeIndices
      Start 26: EdgeStorage
      Start 27: CircuitConfig
16/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ...   Passed    0.02 sec
17/30 Test #17: NodePopulationmatchAttributeValues - int64_t ....   Passed    0.02 sec
18/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ...   Passed    0.02 sec
19/30 Test #19: NodeSetParse ....................................   Passed    0.02 sec
20/30 Test #20: NodeSetBasic ....................................   Passed    0.01 sec
21/30 Test #21: NodeSetCompound .................................   Passed    0.01 sec
22/30 Test #22: NodeSet .........................................   Passed    0.01 sec
      Start 28: SimulationConfig
      Start 29: SONATA
      Start 30: unittests
23/30 Test #24: EdgePopulationSelectAll .........................   Passed    0.01 sec
24/30 Test #23: EdgePopulation ..................................   Passed    0.02 sec
25/30 Test #25: EdgePopulation::writeIndices ....................   Passed    0.01 sec
26/30 Test #26: EdgeStorage .....................................   Passed    0.01 sec
27/30 Test #27: CircuitConfig ...................................   Passed    0.01 sec
28/30 Test #29: SONATA ..........................................   Passed    0.01 sec
29/30 Test #28: SimulationConfig ................................   Passed    0.01 sec
30/30 Test #30: unittests .......................................   Passed    0.03 sec
100% tests passed, 0 tests failed out of 30
Total Test time (real) =   0.09 sec
+ mkdir _empty
+ cp -rp python/tests _empty/
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ PATH=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib/python3.13/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=12
+ /usr/bin/pytest -v _empty/tests
============================= test session starts ==============================
platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29
configfile: pyproject.toml
collecting ... collected 80 items
_empty/tests/test_config.py::TestCircuitConfig::test_astrocyte_properties PASSED [  1%]
_empty/tests/test_config.py::TestCircuitConfig::test_basic PASSED        [  2%]
_empty/tests/test_config.py::TestCircuitConfig::test_biophysical_properties_raises PASSED [  3%]
_empty/tests/test_config.py::TestCircuitConfig::test_duplicate_population PASSED [  5%]
_empty/tests/test_config.py::TestCircuitConfig::test_endfeet_properties PASSED [  6%]
_empty/tests/test_config.py::TestCircuitConfig::test_expanded_json PASSED [  7%]
_empty/tests/test_config.py::TestCircuitConfig::test_get_population_properties PASSED [  8%]
_empty/tests/test_config.py::TestCircuitConfig::test_partial PASSED      [ 10%]
_empty/tests/test_config.py::TestCircuitConfig::test_shadowing_morphs PASSED [ 11%]
_empty/tests/test_config.py::TestCircuitConfig::test_spatial_directories PASSED [ 12%]
_empty/tests/test_config.py::TestCircuitConfig::test_vasculature_properties PASSED [ 13%]
_empty/tests/test_config.py::TestSimulationConfig::test_basic PASSED     [ 15%]
_empty/tests/test_config.py::TestSimulationConfig::test_empty_conditions PASSED [ 16%]
_empty/tests/test_config.py::TestSimulationConfig::test_empty_connection_overrides PASSED [ 17%]
_empty/tests/test_config.py::TestSimulationConfig::test_expanded_json PASSED [ 18%]
_empty/tests/test_config.py::TestSimulationConfig::test_run PASSED       [ 20%]
_empty/tests/test_config.py::TestSimulationConfig::test_simulation_config_failures PASSED [ 21%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_BasicScalarFailFloat PASSED [ 22%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_BasicScalarFailNegativeNodeIds PASSED [ 23%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_BasicScalarFailPopulation PASSED [ 25%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_CorrectStructure PASSED [ 26%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_FailCompoundWithInt PASSED [ 27%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_FaileRecursiveCompound PASSED [ 28%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_MissingBasic PASSED [ 30%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_MissingFile PASSED [ 31%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarAnded PASSED [ 32%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarEnum PASSED [ 33%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarInt PASSED [ 35%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarNodeId PASSED [ 36%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarPopulation PASSED [ 37%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarString PASSED [ 38%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_NodeSetCompound PASSED [ 40%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_NodeSetEmptyArray PASSED [ 41%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_NodeSet_toJSON PASSED [ 42%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_extend PASSED [ 43%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_library_datatype PASSED [ 45%]
_empty/tests/test_population.py::TestSelection::test_basic PASSED        [ 46%]
_empty/tests/test_population.py::TestSelection::test_comparison PASSED   [ 47%]
_empty/tests/test_population.py::TestSelection::test_dtypes PASSED       [ 48%]
_empty/tests/test_population.py::TestSelection::test_from_ranges PASSED  [ 50%]
_empty/tests/test_population.py::TestSelection::test_from_values PASSED  [ 51%]
_empty/tests/test_population.py::TestSelection::test_from_values_empty PASSED [ 52%]
_empty/tests/test_population.py::TestSelection::test_union_intersection PASSED [ 53%]
_empty/tests/test_population.py::TestNodePopulation::test_attribute_names PASSED [ 55%]
_empty/tests/test_population.py::TestNodePopulation::test_enumeration_names PASSED [ 56%]
_empty/tests/test_population.py::TestNodePopulation::test_enumeration_values PASSED [ 57%]
_empty/tests/test_population.py::TestNodePopulation::test_get_attribute PASSED [ 58%]
_empty/tests/test_population.py::TestNodePopulation::test_get_dynamics_attribute PASSED [ 60%]
_empty/tests/test_population.py::TestNodePopulation::test_match_values PASSED [ 61%]
_empty/tests/test_population.py::TestNodePopulation::test_name PASSED    [ 62%]
_empty/tests/test_population.py::TestNodePopulation::test_select_all PASSED [ 63%]
_empty/tests/test_population.py::TestNodePopulation::test_size PASSED    [ 65%]
_empty/tests/test_population.py::TestEdgePopulation::test_afferent_edges PASSED [ 66%]
_empty/tests/test_population.py::TestEdgePopulation::test_connecting_edges PASSED [ 67%]
_empty/tests/test_population.py::TestEdgePopulation::test_efferent_edges PASSED [ 68%]
_empty/tests/test_population.py::TestEdgePopulation::test_library_enumeration PASSED [ 70%]
_empty/tests/test_population.py::TestEdgePopulation::test_select_all PASSED [ 71%]
_empty/tests/test_population.py::TestEdgePopulation::test_source PASSED  [ 72%]
_empty/tests/test_population.py::TestEdgePopulation::test_source_nodes PASSED [ 73%]
_empty/tests/test_population.py::TestEdgePopulation::test_target PASSED  [ 75%]
_empty/tests/test_population.py::TestEdgePopulation::test_target_nodes PASSED [ 76%]
_empty/tests/test_population.py::TestMisc::test_path_ctor PASSED         [ 77%]
_empty/tests/test_reports.py::TestSpikeReader::test_getTimes_from_population PASSED [ 78%]
_empty/tests/test_reports.py::TestSpikeReader::test_get_all_populations PASSED [ 80%]
_empty/tests/test_reports.py::TestSpikeReader::test_get_inexistant_population PASSED [ 81%]
_empty/tests/test_reports.py::TestSpikeReader::test_get_population PASSED [ 82%]
_empty/tests/test_reports.py::TestSpikeReader::test_get_spikes_from_population PASSED [ 83%]
_empty/tests/test_reports.py::TestSomaReportReader::test_block_gap_limit PASSED [ 85%]
_empty/tests/test_reports.py::TestSomaReportReader::test_get_all_population PASSED [ 86%]
_empty/tests/test_reports.py::TestSomaReportReader::test_get_inexistant_population PASSED [ 87%]
_empty/tests/test_reports.py::TestSomaReportReader::test_get_node_id_element_id_mapping PASSED [ 88%]
_empty/tests/test_reports.py::TestSomaReportReader::test_get_population PASSED [ 90%]
_empty/tests/test_reports.py::TestSomaReportReader::test_get_reports_from_population PASSED [ 91%]
_empty/tests/test_reports.py::TestElementReportReader::test_block_gap_limit PASSED [ 92%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_all_population PASSED [ 93%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_inexistant_population PASSED [ 95%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_node_id_element_id_mapping PASSED [ 96%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_node_ids PASSED [ 97%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_population PASSED [ 98%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_reports_from_population PASSED [100%]
============================== 80 passed in 0.37s ==============================
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: libsonata-0.1.29-1.fc43.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.FbLqlG
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ cd libsonata-0.1.29
+ DOCDIR=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/libsonata
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/libsonata
+ cp -pr /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/README.rst /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/libsonata
+ cp -pr /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.1Dzv8Y
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ cd libsonata-0.1.29
+ LICENSEDIR=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/licenses/libsonata
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/licenses/libsonata
+ cp -pr /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/COPYING.LESSER /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/licenses/libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libsonata = 0.1.29-1.fc43 libsonata(aarch-64) = 0.1.29-1.fc43 libsonata.so.0.1()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: libsonata-devel-0.1.29-1.fc43.aarch64
Provides: libsonata-devel = 0.1.29-1.fc43 libsonata-devel(aarch-64) = 0.1.29-1.fc43
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libsonata.so.0.1()(64bit)
Processing files: python3-libsonata-0.1.29-1.fc43.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.OO8ToM
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.29-build
+ cd libsonata-0.1.29
+ DOCDIR=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/python3-libsonata
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/python3-libsonata
+ cp -pr /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/README.rst /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/python3-libsonata
+ cp -pr /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/python3-libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-libsonata = 0.1.29-1.fc43 python3-libsonata = 0.1.29-1.fc43 python3-libsonata(aarch-64) = 0.1.29-1.fc43 python3.13-libsonata = 0.1.29-1.fc43 python3.13dist(libsonata) = 0.1.29 python3dist(libsonata) = 0.1.29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.17.3 rtld(GNU_HASH)
Processing files: libsonata-debugsource-0.1.29-1.fc43.aarch64
Provides: libsonata-debugsource = 0.1.29-1.fc43 libsonata-debugsource(aarch-64) = 0.1.29-1.fc43
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: libsonata-debuginfo-0.1.29-1.fc43.aarch64
Provides: debuginfo(build-id) = 378ef695f0f280d8fef5ff3e7384f3f3a1fa82b3 libsonata-debuginfo = 0.1.29-1.fc43 libsonata-debuginfo(aarch-64) = 0.1.29-1.fc43 libsonata.so.0.1.29-0.1.29-1.fc43.aarch64.debug()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsonata-debugsource(aarch-64) = 0.1.29-1.fc43
Processing files: python3-libsonata-debuginfo-0.1.29-1.fc43.aarch64
Provides: debuginfo(build-id) = be900a6d439259856fe73dc5c6702d916bc3a5d6 python-libsonata-debuginfo = 0.1.29-1.fc43 python3-libsonata-debuginfo = 0.1.29-1.fc43 python3-libsonata-debuginfo(aarch-64) = 0.1.29-1.fc43 python3.13-libsonata-debuginfo = 0.1.29-1.fc43
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsonata-debugsource(aarch-64) = 0.1.29-1.fc43
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT
Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc43.src.rpm
Wrote: /builddir/build/RPMS/libsonata-devel-0.1.29-1.fc43.aarch64.rpm
Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.29-1.fc43.aarch64.rpm
Wrote: /builddir/build/RPMS/libsonata-0.1.29-1.fc43.aarch64.rpm
Wrote: /builddir/build/RPMS/python3-libsonata-0.1.29-1.fc43.aarch64.rpm
Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.29-1.fc43.aarch64.rpm
Wrote: /builddir/build/RPMS/python3-libsonata-debuginfo-0.1.29-1.fc43.aarch64.rpm
Child return code was: 0