Mock Version: 5.9 Mock Version: 5.9 Mock Version: 5.9 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/moose.spec'], chrootPath='/var/lib/mock/f42-build-55760049-6538701/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.snoluxeg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.snoluxeg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '74cb4b41d1c9487c9c44a18d82409437', '-D', '/var/lib/mock/f42-build-55760049-6538701/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.snoluxeg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/moose.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1729814400 Wrote: /builddir/build/SRPMS/moose-3.1.5-24.fc42.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/moose.spec'], chrootPath='/var/lib/mock/f42-build-55760049-6538701/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.snoluxeg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.snoluxeg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'e1ef61171c554af08f6c43a0bdf594e6', '-D', '/var/lib/mock/f42-build-55760049-6538701/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.snoluxeg:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/moose.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1729814400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.unoGK6 + umask 022 + cd /builddir/build/BUILD/moose-3.1.5-build + test -d /builddir/build/BUILD/moose-3.1.5-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/moose-3.1.5-build + /usr/bin/rm -rf /builddir/build/BUILD/moose-3.1.5-build + /usr/bin/mkdir -p /builddir/build/BUILD/moose-3.1.5-build + /usr/bin/mkdir -p /builddir/build/BUILD/moose-3.1.5-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.shn2v0 + umask 022 + cd /builddir/build/BUILD/moose-3.1.5-build + cd /builddir/build/BUILD/moose-3.1.5-build + rm -rf moose-core-3.1.5 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/moose-core-3.1.5.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd moose-core-3.1.5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'moose-3.1.5 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/c570f7c057f9c0ca7360c82a8932bcb0df222da9.patch + /usr/bin/git apply --index --reject - Checking patch pymoose/PyRun.cpp... Applied patch pymoose/PyRun.cpp cleanly. + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q -m c570f7c057f9c0ca7360c82a8932bcb0df222da9.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/665c532745987fb1c7a8fc2a9a57bffa330480b4.patch + /usr/bin/git apply --index --reject - Checking patch pymoose/PyRun.cpp... Applied patch pymoose/PyRun.cpp cleanly. + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q -m 665c532745987fb1c7a8fc2a9a57bffa330480b4.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Use-.so-suffix-for-all-arches.patch + /usr/bin/git apply --index --reject - Checking patch python/setup.cmake.py... Applied patch python/setup.cmake.py cleanly. + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q -m 0001-Use-.so-suffix-for-all-arches.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/moose-python3.10.patch + /usr/bin/git apply --index --reject - Checking patch python/moose/utils.py... Hunk #2 succeeded at 203 (offset -1 lines). Applied patch python/moose/utils.py cleanly. + GIT_COMMITTER_DATE=@1729814400 + GIT_AUTHOR_DATE=@1729814400 + /usr/bin/git commit -q -m moose-python3.10.patch --author 'rpm-build ' + sed -i s/-O3// CMakeLists.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.yTBkg3 + umask 022 + cd /builddir/build/BUILD/moose-3.1.5-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd moose-core-3.1.5 + cmake_opts=(-DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_C_FLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer" -DCMAKE_CXX_FLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer" -DCMAKE_EXE_LINKER_FLAGS="$LDFLAGS -Wl,--build-id" -DCMAKE_MODULE_LINKER_FLAGS="$LDFLAGS -Wl,--build-id" -DVERSION_MOOSE=3.1.5 -DCMAKE_BUILD_TYPE="Release|RelWithDebugInfo" -DCMAKE_INSTALL_DO_STRIP=0 -DPYTHON_EXECUTABLE=/usr/bin/python3) + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=ON '-DCMAKE_C_FLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' '-DCMAKE_CXX_FLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' '-DCMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--build-id' '-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--build-id' -DVERSION_MOOSE=3.1.5 '-DCMAKE_BUILD_TYPE=Release|RelWithDebugInfo' -DCMAKE_INSTALL_DO_STRIP=0 -DPYTHON_EXECUTABLE=/usr/bin/python3 CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success -- Performing Test COMPILER_SUPPORTS_CXX0X -- Performing Test COMPILER_SUPPORTS_CXX0X - Success -- Performing Test COMPILER_WARNS_STRICT_ALIASING -- Performing Test COMPILER_WARNS_STRICT_ALIASING - Success -- Performing Test COMPILER_SUPPORT_UNUSED_BUT_SET_VARIABLE_NO_WARN -- Performing Test COMPILER_SUPPORT_UNUSED_BUT_SET_VARIABLE_NO_WARN - Success -- Your compiler supports c++11 features. Enabling it -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- MOOSE Version 3.1.5 -- | Writing 3.1.5 to /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/python/VERSION -- Operating system: Linux -- Building for Release/No unit tests. -- GSL version : 2.7 -- Found GSL /usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so -- Found HDF5: /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so (found version "1.14.5") found components: CXX HL -- MOOSE will use following HDF5 /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libhdf5_hl_cpp.so;/usr/lib64/libhdf5_hl.so -- Using gsl libraries: /usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so CMake Deprecation Warning at external/muparser/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at basecode/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at signeur/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at ksolve/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at hsolve/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at diffusion/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at synapse/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at intfire/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Shared libs: /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libhdf5_hl_cpp.so;/usr/lib64/libhdf5_hl.so;/usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so CMake Warning (dev) at CMakeLists.txt:381 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.4") -- Python include paths: -I/usr/include/python3.13 -I/usr/include/python3.13 -- NumPy include path: /usr/lib64/python3.13/site-packages/numpy/_core/include -- Platform: Linux-6.11.8-300.fc41.x86_64-x86_64-with-glibc2.40.9000 CMake Warning (dev) at CMakeLists.txt:411 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found version "3.13.1") -- binary distribution file /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/bdist/pymoose-3.1.5.CMAKE.tar.gz ======================================= If cmake did not report any error, run 'make' to build MOOSE ======================================= -- Configuring done (3.1s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j6 --verbose Change Dir: '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j6 /usr/bin/cmake -S/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -B/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/CMakeFiles /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/depend /usr/bin/gmake -f external/muparser/CMakeFiles/muparser.dir/build.make external/muparser/CMakeFiles/muparser.dir/depend /usr/bin/gmake -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/depend /usr/bin/gmake -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/depend /usr/bin/gmake -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire/CMakeFiles/intfire.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f randnum/CMakeFiles/randnum.dir/build.make randnum/CMakeFiles/randnum.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser/CMakeFiles/muparser.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell/CMakeFiles/shell.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg/CMakeFiles/msg.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode/CMakeFiles/basecode.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum/CMakeFiles/randnum.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f external/muparser/CMakeFiles/muparser.dir/build.make external/muparser/CMakeFiles/muparser.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f randnum/CMakeFiles/randnum.dir/build.make randnum/CMakeFiles/randnum.dir/build [ 0%] Building CXX object intfire/CMakeFiles/intfire.dir/AdExIF.cpp.o gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT intfire/CMakeFiles/intfire.dir/AdExIF.cpp.o -MF CMakeFiles/intfire.dir/AdExIF.cpp.o.d -o CMakeFiles/intfire.dir/AdExIF.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/AdExIF.cpp [ 0%] Building CXX object shell/CMakeFiles/shell.dir/Shell.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT shell/CMakeFiles/shell.dir/Shell.cpp.o -MF CMakeFiles/shell.dir/Shell.cpp.o.d -o CMakeFiles/shell.dir/Shell.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/Shell.cpp [ 1%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParser.cpp.o [ 1%] Building CXX object msg/CMakeFiles/msg.dir/Msg.cpp.o [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/consts.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/./include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -Wno-switch -Wno-unknown-pragmas -MD -MT external/muparser/CMakeFiles/muparser.dir/src/muParser.cpp.o -MF CMakeFiles/muparser.dir/src/muParser.cpp.o.d -o CMakeFiles/muparser.dir/src/muParser.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/src/muParser.cpp cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/consts.cpp.o -MF CMakeFiles/basecode.dir/consts.cpp.o.d -o CMakeFiles/basecode.dir/consts.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/consts.cpp cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT msg/CMakeFiles/msg.dir/Msg.cpp.o -MF CMakeFiles/msg.dir/Msg.cpp.o.d -o CMakeFiles/msg.dir/Msg.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/Msg.cpp [ 2%] Building CXX object randnum/CMakeFiles/randnum.dir/Binomial.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/Binomial.cpp.o -MF CMakeFiles/randnum.dir/Binomial.cpp.o.d -o CMakeFiles/randnum.dir/Binomial.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/Binomial.cpp [ 2%] Building CXX object randnum/CMakeFiles/randnum.dir/BinomialRng.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/BinomialRng.cpp.o -MF CMakeFiles/randnum.dir/BinomialRng.cpp.o.d -o CMakeFiles/randnum.dir/BinomialRng.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/BinomialRng.cpp [ 2%] Building CXX object basecode/CMakeFiles/basecode.dir/Element.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/Element.cpp.o -MF CMakeFiles/basecode.dir/Element.cpp.o.d -o CMakeFiles/basecode.dir/Element.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/Element.cpp [ 2%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/./include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -Wno-switch -Wno-unknown-pragmas -MD -MT external/muparser/CMakeFiles/muparser.dir/src/muParserBase.cpp.o -MF CMakeFiles/muparser.dir/src/muParserBase.cpp.o.d -o CMakeFiles/muparser.dir/src/muParserBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/src/muParserBase.cpp [ 3%] Building CXX object intfire/CMakeFiles/intfire.dir/AdThreshIF.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT intfire/CMakeFiles/intfire.dir/AdThreshIF.cpp.o -MF CMakeFiles/intfire.dir/AdThreshIF.cpp.o.d -o CMakeFiles/intfire.dir/AdThreshIF.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/AdThreshIF.cpp [ 4%] Building CXX object randnum/CMakeFiles/randnum.dir/Exponential.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/Exponential.cpp.o -MF CMakeFiles/randnum.dir/Exponential.cpp.o.d -o CMakeFiles/randnum.dir/Exponential.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/Exponential.cpp [ 4%] Building CXX object randnum/CMakeFiles/randnum.dir/ExponentialRng.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/ExponentialRng.cpp.o -MF CMakeFiles/randnum.dir/ExponentialRng.cpp.o.d -o CMakeFiles/randnum.dir/ExponentialRng.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/ExponentialRng.cpp [ 5%] Building CXX object msg/CMakeFiles/msg.dir/DiagonalMsg.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT msg/CMakeFiles/msg.dir/DiagonalMsg.cpp.o -MF CMakeFiles/msg.dir/DiagonalMsg.cpp.o.d -o CMakeFiles/msg.dir/DiagonalMsg.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/DiagonalMsg.cpp [ 6%] Building CXX object basecode/CMakeFiles/basecode.dir/DataElement.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/DataElement.cpp.o -MF CMakeFiles/basecode.dir/DataElement.cpp.o.d -o CMakeFiles/basecode.dir/DataElement.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/DataElement.cpp [ 6%] Building CXX object intfire/CMakeFiles/intfire.dir/ExIF.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT intfire/CMakeFiles/intfire.dir/ExIF.cpp.o -MF CMakeFiles/intfire.dir/ExIF.cpp.o.d -o CMakeFiles/intfire.dir/ExIF.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/ExIF.cpp [ 6%] Building CXX object basecode/CMakeFiles/basecode.dir/GlobalDataElement.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/GlobalDataElement.cpp.o -MF CMakeFiles/basecode.dir/GlobalDataElement.cpp.o.d -o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/GlobalDataElement.cpp [ 7%] Building CXX object basecode/CMakeFiles/basecode.dir/LocalDataElement.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/LocalDataElement.cpp.o -MF CMakeFiles/basecode.dir/LocalDataElement.cpp.o.d -o CMakeFiles/basecode.dir/LocalDataElement.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/LocalDataElement.cpp [ 8%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserBytecode.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/./include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -Wno-switch -Wno-unknown-pragmas -MD -MT external/muparser/CMakeFiles/muparser.dir/src/muParserBytecode.cpp.o -MF CMakeFiles/muparser.dir/src/muParserBytecode.cpp.o.d -o CMakeFiles/muparser.dir/src/muParserBytecode.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/src/muParserBytecode.cpp [ 8%] Building CXX object msg/CMakeFiles/msg.dir/OneToAllMsg.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT msg/CMakeFiles/msg.dir/OneToAllMsg.cpp.o -MF CMakeFiles/msg.dir/OneToAllMsg.cpp.o.d -o CMakeFiles/msg.dir/OneToAllMsg.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/OneToAllMsg.cpp [ 8%] Building CXX object randnum/CMakeFiles/randnum.dir/Gamma.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/Gamma.cpp.o -MF CMakeFiles/randnum.dir/Gamma.cpp.o.d -o CMakeFiles/randnum.dir/Gamma.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/Gamma.cpp [ 8%] Building CXX object basecode/CMakeFiles/basecode.dir/Eref.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/Eref.cpp.o -MF CMakeFiles/basecode.dir/Eref.cpp.o.d -o CMakeFiles/basecode.dir/Eref.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/Eref.cpp [ 9%] Building CXX object randnum/CMakeFiles/randnum.dir/GammaRng.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/GammaRng.cpp.o -MF CMakeFiles/randnum.dir/GammaRng.cpp.o.d -o CMakeFiles/randnum.dir/GammaRng.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/GammaRng.cpp [ 10%] Building CXX object shell/CMakeFiles/shell.dir/ShellCopy.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT shell/CMakeFiles/shell.dir/ShellCopy.cpp.o -MF CMakeFiles/shell.dir/ShellCopy.cpp.o.d -o CMakeFiles/shell.dir/ShellCopy.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/ShellCopy.cpp [ 11%] Building CXX object intfire/CMakeFiles/intfire.dir/IntFireBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT intfire/CMakeFiles/intfire.dir/IntFireBase.cpp.o -MF CMakeFiles/intfire.dir/IntFireBase.cpp.o.d -o CMakeFiles/intfire.dir/IntFireBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/IntFireBase.cpp [ 11%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserCallback.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/./include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -Wno-switch -Wno-unknown-pragmas -MD -MT external/muparser/CMakeFiles/muparser.dir/src/muParserCallback.cpp.o -MF CMakeFiles/muparser.dir/src/muParserCallback.cpp.o.d -o CMakeFiles/muparser.dir/src/muParserCallback.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/src/muParserCallback.cpp [ 11%] Building CXX object basecode/CMakeFiles/basecode.dir/Finfo.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/Finfo.cpp.o -MF CMakeFiles/basecode.dir/Finfo.cpp.o.d -o CMakeFiles/basecode.dir/Finfo.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/Finfo.cpp [ 11%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserDLL.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/./include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -Wno-switch -Wno-unknown-pragmas -MD -MT external/muparser/CMakeFiles/muparser.dir/src/muParserDLL.cpp.o -MF CMakeFiles/muparser.dir/src/muParserDLL.cpp.o.d -o CMakeFiles/muparser.dir/src/muParserDLL.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/src/muParserDLL.cpp [ 12%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserError.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/./include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -Wno-switch -Wno-unknown-pragmas -MD -MT external/muparser/CMakeFiles/muparser.dir/src/muParserError.cpp.o -MF CMakeFiles/muparser.dir/src/muParserError.cpp.o.d -o CMakeFiles/muparser.dir/src/muParserError.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/src/muParserError.cpp [ 13%] Building CXX object msg/CMakeFiles/msg.dir/OneToOneMsg.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT msg/CMakeFiles/msg.dir/OneToOneMsg.cpp.o -MF CMakeFiles/msg.dir/OneToOneMsg.cpp.o.d -o CMakeFiles/msg.dir/OneToOneMsg.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/OneToOneMsg.cpp [ 13%] Building CXX object shell/CMakeFiles/shell.dir/ShellThreads.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT shell/CMakeFiles/shell.dir/ShellThreads.cpp.o -MF CMakeFiles/shell.dir/ShellThreads.cpp.o.d -o CMakeFiles/shell.dir/ShellThreads.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/ShellThreads.cpp [ 13%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserInt.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/./include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -Wno-switch -Wno-unknown-pragmas -MD -MT external/muparser/CMakeFiles/muparser.dir/src/muParserInt.cpp.o -MF CMakeFiles/muparser.dir/src/muParserInt.cpp.o.d -o CMakeFiles/muparser.dir/src/muParserInt.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/src/muParserInt.cpp [ 13%] Building CXX object randnum/CMakeFiles/randnum.dir/Normal.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/Normal.cpp.o -MF CMakeFiles/randnum.dir/Normal.cpp.o.d -o CMakeFiles/randnum.dir/Normal.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/Normal.cpp /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/Normal.cpp: In function ‘Normal::aliasMethod()’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/Normal.cpp:311:50: warning: ‘uniform_prime’ may be used uninitialized [-Wmaybe-uninitialized] 311 | v_num = (unsigned long)(d*uniform*uniform*uniform_prime); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/Normal.cpp:205:19: note: ‘uniform_prime’ was declared here 205 | unsigned long uniform_prime; | ^~~~~~~~~~~~~ [ 13%] Building CXX object randnum/CMakeFiles/randnum.dir/NormalRng.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/NormalRng.cpp.o -MF CMakeFiles/randnum.dir/NormalRng.cpp.o.d -o CMakeFiles/randnum.dir/NormalRng.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/NormalRng.cpp [ 13%] Building CXX object msg/CMakeFiles/msg.dir/SingleMsg.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT msg/CMakeFiles/msg.dir/SingleMsg.cpp.o -MF CMakeFiles/msg.dir/SingleMsg.cpp.o.d -o CMakeFiles/msg.dir/SingleMsg.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/SingleMsg.cpp [ 13%] Building CXX object shell/CMakeFiles/shell.dir/LoadModels.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT shell/CMakeFiles/shell.dir/LoadModels.cpp.o -MF CMakeFiles/shell.dir/LoadModels.cpp.o.d -o CMakeFiles/shell.dir/LoadModels.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/LoadModels.cpp [ 14%] Building CXX object basecode/CMakeFiles/basecode.dir/DestFinfo.cpp.o [ 14%] Building CXX object intfire/CMakeFiles/intfire.dir/IzhIF.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT intfire/CMakeFiles/intfire.dir/IzhIF.cpp.o -MF CMakeFiles/intfire.dir/IzhIF.cpp.o.d -o CMakeFiles/intfire.dir/IzhIF.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/IzhIF.cpp cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/DestFinfo.cpp.o -MF CMakeFiles/basecode.dir/DestFinfo.cpp.o.d -o CMakeFiles/basecode.dir/DestFinfo.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/DestFinfo.cpp [ 15%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserTest.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/./include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -Wno-switch -Wno-unknown-pragmas -MD -MT external/muparser/CMakeFiles/muparser.dir/src/muParserTest.cpp.o -MF CMakeFiles/muparser.dir/src/muParserTest.cpp.o.d -o CMakeFiles/muparser.dir/src/muParserTest.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/src/muParserTest.cpp [ 15%] Building CXX object basecode/CMakeFiles/basecode.dir/Cinfo.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/Cinfo.cpp.o -MF CMakeFiles/basecode.dir/Cinfo.cpp.o.d -o CMakeFiles/basecode.dir/Cinfo.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/Cinfo.cpp [ 15%] Building CXX object msg/CMakeFiles/msg.dir/SparseMsg.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT msg/CMakeFiles/msg.dir/SparseMsg.cpp.o -MF CMakeFiles/msg.dir/SparseMsg.cpp.o.d -o CMakeFiles/msg.dir/SparseMsg.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/SparseMsg.cpp [ 16%] Building CXX object shell/CMakeFiles/shell.dir/SaveModels.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT shell/CMakeFiles/shell.dir/SaveModels.cpp.o -MF CMakeFiles/shell.dir/SaveModels.cpp.o.d -o CMakeFiles/shell.dir/SaveModels.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/SaveModels.cpp [ 16%] Building CXX object intfire/CMakeFiles/intfire.dir/LIF.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT intfire/CMakeFiles/intfire.dir/LIF.cpp.o -MF CMakeFiles/intfire.dir/LIF.cpp.o.d -o CMakeFiles/intfire.dir/LIF.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/LIF.cpp [ 17%] Building CXX object randnum/CMakeFiles/randnum.dir/Poisson.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/Poisson.cpp.o -MF CMakeFiles/randnum.dir/Poisson.cpp.o.d -o CMakeFiles/randnum.dir/Poisson.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/Poisson.cpp [ 17%] Building CXX object shell/CMakeFiles/shell.dir/Neutral.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT shell/CMakeFiles/shell.dir/Neutral.cpp.o -MF CMakeFiles/shell.dir/Neutral.cpp.o.d -o CMakeFiles/shell.dir/Neutral.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/Neutral.cpp [ 17%] Building CXX object randnum/CMakeFiles/randnum.dir/PoissonRng.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/PoissonRng.cpp.o -MF CMakeFiles/randnum.dir/PoissonRng.cpp.o.d -o CMakeFiles/randnum.dir/PoissonRng.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/PoissonRng.cpp [ 18%] Building CXX object intfire/CMakeFiles/intfire.dir/QIF.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT intfire/CMakeFiles/intfire.dir/QIF.cpp.o -MF CMakeFiles/intfire.dir/QIF.cpp.o.d -o CMakeFiles/intfire.dir/QIF.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/QIF.cpp [ 19%] Building CXX object basecode/CMakeFiles/basecode.dir/SrcFinfo.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/SrcFinfo.cpp.o -MF CMakeFiles/basecode.dir/SrcFinfo.cpp.o.d -o CMakeFiles/basecode.dir/SrcFinfo.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/SrcFinfo.cpp [ 20%] Building CXX object randnum/CMakeFiles/randnum.dir/Probability.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/Probability.cpp.o -MF CMakeFiles/randnum.dir/Probability.cpp.o.d -o CMakeFiles/randnum.dir/Probability.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/Probability.cpp [ 20%] Building CXX object randnum/CMakeFiles/randnum.dir/RandGenerator.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/RandGenerator.cpp.o -MF CMakeFiles/randnum.dir/RandGenerator.cpp.o.d -o CMakeFiles/randnum.dir/RandGenerator.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/RandGenerator.cpp [ 20%] Building CXX object basecode/CMakeFiles/basecode.dir/ValueFinfo.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/ValueFinfo.cpp.o -MF CMakeFiles/basecode.dir/ValueFinfo.cpp.o.d -o CMakeFiles/basecode.dir/ValueFinfo.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/ValueFinfo.cpp [ 20%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserTokenReader.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/./include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -Wno-switch -Wno-unknown-pragmas -MD -MT external/muparser/CMakeFiles/muparser.dir/src/muParserTokenReader.cpp.o -MF CMakeFiles/muparser.dir/src/muParserTokenReader.cpp.o.d -o CMakeFiles/muparser.dir/src/muParserTokenReader.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/src/muParserTokenReader.cpp [ 20%] Building CXX object intfire/CMakeFiles/intfire.dir/testIntFire.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT intfire/CMakeFiles/intfire.dir/testIntFire.cpp.o -MF CMakeFiles/intfire.dir/testIntFire.cpp.o.d -o CMakeFiles/intfire.dir/testIntFire.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/intfire/testIntFire.cpp [ 20%] Building CXX object basecode/CMakeFiles/basecode.dir/SharedFinfo.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/SharedFinfo.cpp.o -MF CMakeFiles/basecode.dir/SharedFinfo.cpp.o.d -o CMakeFiles/basecode.dir/SharedFinfo.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/SharedFinfo.cpp [ 20%] Linking CXX static library libintfire.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire && /usr/bin/cmake -P CMakeFiles/intfire.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/intfire && /usr/bin/cmake -E cmake_link_script CMakeFiles/intfire.dir/link.txt --verbose=1 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/SparseMsg.cpp: In function ‘fillErefsFromMatrix(SparseMatrix const&, std::vector >, std::allocator > > >&, Element*, Element*)’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/SparseMsg.cpp:444:67: warning: ‘entry’ may be used uninitialized [-Wmaybe-uninitialized] 444 | v[i][j] = Eref( e2, colIndex[j], entry[j] ); | ^ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/SparseMsg.cpp:439:37: note: ‘entry’ was declared here 439 | const unsigned int* entry; | ^~~~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/SparseMsg.cpp:444:67: warning: ‘colIndex’ may be used uninitialized [-Wmaybe-uninitialized] 444 | v[i][j] = Eref( e2, colIndex[j], entry[j] ); | ^ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/SparseMsg.cpp:440:37: note: ‘colIndex’ was declared here 440 | const unsigned int* colIndex; | ^~~~~~~~ /usr/bin/ar qc libintfire.a CMakeFiles/intfire.dir/AdExIF.cpp.o CMakeFiles/intfire.dir/AdThreshIF.cpp.o CMakeFiles/intfire.dir/ExIF.cpp.o CMakeFiles/intfire.dir/IntFireBase.cpp.o CMakeFiles/intfire.dir/IzhIF.cpp.o CMakeFiles/intfire.dir/LIF.cpp.o CMakeFiles/intfire.dir/QIF.cpp.o CMakeFiles/intfire.dir/testIntFire.cpp.o /usr/bin/ranlib libintfire.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 20%] Built target intfire [ 20%] Building CXX object randnum/CMakeFiles/randnum.dir/Uniform.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/Uniform.cpp.o -MF CMakeFiles/randnum.dir/Uniform.cpp.o.d -o CMakeFiles/randnum.dir/Uniform.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/Uniform.cpp /usr/bin/gmake -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/scheduling /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/scheduling/CMakeFiles/scheduling.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 20%] Building CXX object scheduling/CMakeFiles/scheduling.dir/Clock.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/scheduling && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT scheduling/CMakeFiles/scheduling.dir/Clock.cpp.o -MF CMakeFiles/scheduling.dir/Clock.cpp.o.d -o CMakeFiles/scheduling.dir/Clock.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling/Clock.cpp [ 21%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o -MF CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o.d -o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/FieldElementFinfo.cpp [ 22%] Building CXX object randnum/CMakeFiles/randnum.dir/UniformRng.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/UniformRng.cpp.o -MF CMakeFiles/randnum.dir/UniformRng.cpp.o.d -o CMakeFiles/randnum.dir/UniformRng.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/UniformRng.cpp [ 22%] Linking CXX static library libmuparser.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/cmake -P CMakeFiles/muparser.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/external/muparser && /usr/bin/cmake -E cmake_link_script CMakeFiles/muparser.dir/link.txt --verbose=1 [ 22%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElement.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/FieldElement.cpp.o -MF CMakeFiles/basecode.dir/FieldElement.cpp.o.d -o CMakeFiles/basecode.dir/FieldElement.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/FieldElement.cpp /usr/bin/ar qc libmuparser.a CMakeFiles/muparser.dir/src/muParser.cpp.o CMakeFiles/muparser.dir/src/muParserBase.cpp.o CMakeFiles/muparser.dir/src/muParserBytecode.cpp.o CMakeFiles/muparser.dir/src/muParserCallback.cpp.o CMakeFiles/muparser.dir/src/muParserDLL.cpp.o CMakeFiles/muparser.dir/src/muParserError.cpp.o CMakeFiles/muparser.dir/src/muParserInt.cpp.o CMakeFiles/muparser.dir/src/muParserTest.cpp.o CMakeFiles/muparser.dir/src/muParserTokenReader.cpp.o /usr/bin/ranlib libmuparser.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 22%] Built target muparser [ 23%] Building CXX object shell/CMakeFiles/shell.dir/Wildcard.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell && /usr/bin/g++ -DENABLE_CPP11 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-Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT shell/CMakeFiles/shell.dir/Wildcard.cpp.o -MF CMakeFiles/shell.dir/Wildcard.cpp.o.d -o CMakeFiles/shell.dir/Wildcard.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/Wildcard.cpp [ 23%] Building CXX object basecode/CMakeFiles/basecode.dir/Id.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/Id.cpp.o -MF CMakeFiles/basecode.dir/Id.cpp.o.d -o CMakeFiles/basecode.dir/Id.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/Id.cpp [ 24%] Building CXX object msg/CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 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-c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/OneToOneDataIndexMsg.cpp [ 25%] Building CXX object basecode/CMakeFiles/basecode.dir/ObjId.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/ObjId.cpp.o -MF CMakeFiles/basecode.dir/ObjId.cpp.o.d -o CMakeFiles/basecode.dir/ObjId.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/ObjId.cpp [ 25%] Building CXX object randnum/CMakeFiles/randnum.dir/mt19937ar.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT randnum/CMakeFiles/randnum.dir/mt19937ar.cpp.o -MF CMakeFiles/randnum.dir/mt19937ar.cpp.o.d -o CMakeFiles/randnum.dir/mt19937ar.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/mt19937ar.cpp In file included from /usr/include/sys/time.h:21, from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/randnum/mt19937ar.cpp:49: /usr/include/features.h:199:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 199 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 26%] Linking CXX static library librandnum.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/cmake -P CMakeFiles/randnum.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/randnum && /usr/bin/cmake -E cmake_link_script CMakeFiles/randnum.dir/link.txt --verbose=1 /usr/bin/ar qc librandnum.a CMakeFiles/randnum.dir/Binomial.cpp.o CMakeFiles/randnum.dir/BinomialRng.cpp.o CMakeFiles/randnum.dir/Exponential.cpp.o CMakeFiles/randnum.dir/ExponentialRng.cpp.o CMakeFiles/randnum.dir/Gamma.cpp.o CMakeFiles/randnum.dir/GammaRng.cpp.o CMakeFiles/randnum.dir/Normal.cpp.o CMakeFiles/randnum.dir/NormalRng.cpp.o CMakeFiles/randnum.dir/Poisson.cpp.o CMakeFiles/randnum.dir/PoissonRng.cpp.o CMakeFiles/randnum.dir/Probability.cpp.o CMakeFiles/randnum.dir/RandGenerator.cpp.o CMakeFiles/randnum.dir/Uniform.cpp.o CMakeFiles/randnum.dir/UniformRng.cpp.o CMakeFiles/randnum.dir/mt19937ar.cpp.o /usr/bin/ranlib librandnum.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 26%] Built target randnum [ 26%] Building CXX object basecode/CMakeFiles/basecode.dir/global.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/global.cpp.o -MF CMakeFiles/basecode.dir/global.cpp.o.d -o CMakeFiles/basecode.dir/global.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/global.cpp [ 26%] Building CXX object shell/CMakeFiles/shell.dir/testShell.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT shell/CMakeFiles/shell.dir/testShell.cpp.o -MF CMakeFiles/shell.dir/testShell.cpp.o.d -o CMakeFiles/shell.dir/testShell.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/shell/testShell.cpp /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/global.cpp: In function ‘bool moose::createParentDirs(const std::string&)’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/global.cpp:155:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | system( command.c_str() ); | ~~~~~~^~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object msg/CMakeFiles/msg.dir/testMsg.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT msg/CMakeFiles/msg.dir/testMsg.cpp.o -MF CMakeFiles/msg.dir/testMsg.cpp.o.d -o CMakeFiles/msg.dir/testMsg.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg/testMsg.cpp [ 27%] Building CXX object basecode/CMakeFiles/basecode.dir/SetGet.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/SetGet.cpp.o -MF CMakeFiles/basecode.dir/SetGet.cpp.o.d -o CMakeFiles/basecode.dir/SetGet.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/SetGet.cpp /usr/bin/gmake -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics/CMakeFiles/biophysics.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 27%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IntFire.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/IntFire.cpp.o -MF CMakeFiles/biophysics.dir/IntFire.cpp.o.d -o CMakeFiles/biophysics.dir/IntFire.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/IntFire.cpp [ 27%] Building CXX object basecode/CMakeFiles/basecode.dir/OpFuncBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/OpFuncBase.cpp.o -MF CMakeFiles/basecode.dir/OpFuncBase.cpp.o.d -o CMakeFiles/basecode.dir/OpFuncBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/OpFuncBase.cpp [ 27%] Building CXX object basecode/CMakeFiles/basecode.dir/EpFunc.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/EpFunc.cpp.o -MF CMakeFiles/basecode.dir/EpFunc.cpp.o.d -o CMakeFiles/basecode.dir/EpFunc.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/EpFunc.cpp [ 28%] Building CXX object basecode/CMakeFiles/basecode.dir/HopFunc.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/HopFunc.cpp.o -MF CMakeFiles/basecode.dir/HopFunc.cpp.o.d -o CMakeFiles/basecode.dir/HopFunc.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/HopFunc.cpp [ 29%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SpikeGen.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/SpikeGen.cpp.o -MF CMakeFiles/biophysics.dir/SpikeGen.cpp.o.d -o CMakeFiles/biophysics.dir/SpikeGen.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/SpikeGen.cpp [ 29%] Building CXX object basecode/CMakeFiles/basecode.dir/SparseMatrix.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/SparseMatrix.cpp.o -MF CMakeFiles/basecode.dir/SparseMatrix.cpp.o.d -o CMakeFiles/basecode.dir/SparseMatrix.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/SparseMatrix.cpp [ 29%] Linking CXX static library libmsg.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg && /usr/bin/cmake -P CMakeFiles/msg.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/msg && /usr/bin/cmake -E cmake_link_script CMakeFiles/msg.dir/link.txt --verbose=1 [ 30%] Building CXX object basecode/CMakeFiles/basecode.dir/doubleEq.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/doubleEq.cpp.o -MF CMakeFiles/basecode.dir/doubleEq.cpp.o.d -o CMakeFiles/basecode.dir/doubleEq.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/doubleEq.cpp /usr/bin/ar qc libmsg.a CMakeFiles/msg.dir/Msg.cpp.o CMakeFiles/msg.dir/DiagonalMsg.cpp.o CMakeFiles/msg.dir/OneToAllMsg.cpp.o CMakeFiles/msg.dir/OneToOneMsg.cpp.o CMakeFiles/msg.dir/SingleMsg.cpp.o CMakeFiles/msg.dir/SparseMsg.cpp.o CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o CMakeFiles/msg.dir/testMsg.cpp.o /usr/bin/ranlib libmsg.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 30%] Built target msg [ 30%] Building CXX object basecode/CMakeFiles/basecode.dir/testAsync.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/../msg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT basecode/CMakeFiles/basecode.dir/testAsync.cpp.o -MF CMakeFiles/basecode.dir/testAsync.cpp.o.d -o CMakeFiles/basecode.dir/testAsync.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/testAsync.cpp [ 30%] Building CXX object biophysics/CMakeFiles/biophysics.dir/RandSpike.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/RandSpike.cpp.o -MF CMakeFiles/biophysics.dir/RandSpike.cpp.o.d -o CMakeFiles/biophysics.dir/RandSpike.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/RandSpike.cpp [ 31%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o -MF CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o.d -o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/CompartmentDataHolder.cpp [ 31%] Building CXX object scheduling/CMakeFiles/scheduling.dir/testScheduling.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/scheduling && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT scheduling/CMakeFiles/scheduling.dir/testScheduling.cpp.o -MF CMakeFiles/scheduling.dir/testScheduling.cpp.o.d -o CMakeFiles/scheduling.dir/testScheduling.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling/testScheduling.cpp [ 31%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/CompartmentBase.cpp.o -MF CMakeFiles/biophysics.dir/CompartmentBase.cpp.o.d -o CMakeFiles/biophysics.dir/CompartmentBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/CompartmentBase.cpp [ 31%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Compartment.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/Compartment.cpp.o -MF CMakeFiles/biophysics.dir/Compartment.cpp.o.d -o CMakeFiles/biophysics.dir/Compartment.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/Compartment.cpp [ 32%] Linking CXX static library libscheduling.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/scheduling && /usr/bin/cmake -P CMakeFiles/scheduling.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/scheduling && /usr/bin/cmake -E cmake_link_script CMakeFiles/scheduling.dir/link.txt --verbose=1 [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SymCompartment.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/SymCompartment.cpp.o -MF CMakeFiles/biophysics.dir/SymCompartment.cpp.o.d -o CMakeFiles/biophysics.dir/SymCompartment.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/SymCompartment.cpp [ 33%] Linking CXX static library libshell.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell && /usr/bin/cmake -P CMakeFiles/shell.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/shell && /usr/bin/cmake -E cmake_link_script CMakeFiles/shell.dir/link.txt --verbose=1 /usr/bin/ar qc libscheduling.a CMakeFiles/scheduling.dir/Clock.cpp.o CMakeFiles/scheduling.dir/testScheduling.cpp.o /usr/bin/ranlib libscheduling.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 33%] Built target scheduling [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/GapJunction.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC 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'/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins/CMakeFiles/moose_builtins.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 33%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Arith.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/Arith.cpp.o -MF CMakeFiles/moose_builtins.dir/Arith.cpp.o.d -o CMakeFiles/moose_builtins.dir/Arith.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Arith.cpp [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/ChanBase.cpp.o -MF CMakeFiles/biophysics.dir/ChanBase.cpp.o.d -o CMakeFiles/biophysics.dir/ChanBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/ChanBase.cpp [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanCommon.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/ChanCommon.cpp.o -MF CMakeFiles/biophysics.dir/ChanCommon.cpp.o.d -o CMakeFiles/biophysics.dir/ChanCommon.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/ChanCommon.cpp [ 35%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Group.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/Group.cpp.o -MF CMakeFiles/moose_builtins.dir/Group.cpp.o.d -o CMakeFiles/moose_builtins.dir/Group.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Group.cpp [ 35%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/HHChannel.cpp.o -MF CMakeFiles/biophysics.dir/HHChannel.cpp.o.d -o CMakeFiles/biophysics.dir/HHChannel.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/HHChannel.cpp [ 35%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Mstring.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/Mstring.cpp.o -MF CMakeFiles/moose_builtins.dir/Mstring.cpp.o.d -o CMakeFiles/moose_builtins.dir/Mstring.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Mstring.cpp [ 36%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannelBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/HHChannelBase.cpp.o -MF CMakeFiles/biophysics.dir/HHChannelBase.cpp.o.d -o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/HHChannelBase.cpp [ 36%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Func.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/Func.cpp.o -MF CMakeFiles/moose_builtins.dir/Func.cpp.o.d -o CMakeFiles/moose_builtins.dir/Func.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Func.cpp [ 36%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel2D.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/HHChannel2D.cpp.o -MF CMakeFiles/biophysics.dir/HHChannel2D.cpp.o.d -o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/HHChannel2D.cpp [ 36%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/HHGate.cpp.o -MF CMakeFiles/biophysics.dir/HHGate.cpp.o.d -o CMakeFiles/biophysics.dir/HHGate.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/HHGate.cpp [ 37%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Function.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/Function.cpp.o -MF CMakeFiles/moose_builtins.dir/Function.cpp.o.d -o CMakeFiles/moose_builtins.dir/Function.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Function.cpp [ 37%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Variable.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/Variable.cpp.o -MF CMakeFiles/moose_builtins.dir/Variable.cpp.o.d -o CMakeFiles/moose_builtins.dir/Variable.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Variable.cpp [ 37%] Linking CXX static library libbasecode.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/cmake -P CMakeFiles/basecode.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/basecode && /usr/bin/cmake -E cmake_link_script CMakeFiles/basecode.dir/link.txt --verbose=1 /usr/bin/ar qc libbasecode.a CMakeFiles/basecode.dir/consts.cpp.o CMakeFiles/basecode.dir/Element.cpp.o CMakeFiles/basecode.dir/DataElement.cpp.o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o CMakeFiles/basecode.dir/LocalDataElement.cpp.o CMakeFiles/basecode.dir/Eref.cpp.o CMakeFiles/basecode.dir/Finfo.cpp.o CMakeFiles/basecode.dir/DestFinfo.cpp.o CMakeFiles/basecode.dir/Cinfo.cpp.o CMakeFiles/basecode.dir/SrcFinfo.cpp.o CMakeFiles/basecode.dir/ValueFinfo.cpp.o CMakeFiles/basecode.dir/SharedFinfo.cpp.o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o CMakeFiles/basecode.dir/FieldElement.cpp.o CMakeFiles/basecode.dir/Id.cpp.o CMakeFiles/basecode.dir/ObjId.cpp.o CMakeFiles/basecode.dir/global.cpp.o CMakeFiles/basecode.dir/SetGet.cpp.o CMakeFiles/basecode.dir/OpFuncBase.cpp.o CMakeFiles/basecode.dir/EpFunc.cpp.o CMakeFiles/basecode.dir/HopFunc.cpp.o CMakeFiles/basecode.dir/SparseMatrix.cpp.o CMakeFiles/basecode.dir/doubleEq.cpp.o CMakeFiles/basecode.dir/testAsync.cpp.o /usr/bin/ranlib libbasecode.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 37%] Built target basecode [ 38%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/InputVariable.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/InputVariable.cpp.o -MF CMakeFiles/moose_builtins.dir/InputVariable.cpp.o.d -o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/InputVariable.cpp [ 38%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TableBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/TableBase.cpp.o -MF CMakeFiles/moose_builtins.dir/TableBase.cpp.o.d -o CMakeFiles/moose_builtins.dir/TableBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/TableBase.cpp [ 38%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Table.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 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CMakeFiles/moose_builtins.dir/Table.cpp.o.d -o CMakeFiles/moose_builtins.dir/Table.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Table.cpp [ 39%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/Interpol.cpp.o -MF CMakeFiles/moose_builtins.dir/Interpol.cpp.o.d -o CMakeFiles/moose_builtins.dir/Interpol.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Interpol.cpp [ 39%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o -MF CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o.d -o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/StimulusTable.cpp [ 40%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate2D.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/HHGate2D.cpp.o -MF CMakeFiles/biophysics.dir/HHGate2D.cpp.o.d -o CMakeFiles/biophysics.dir/HHGate2D.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/HHGate2D.cpp [ 40%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TimeTable.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/TimeTable.cpp.o -MF CMakeFiles/moose_builtins.dir/TimeTable.cpp.o.d -o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/TimeTable.cpp /usr/bin/gmake -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility/CMakeFiles/utility.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 41%] Building CXX object utility/CMakeFiles/utility.dir/strutil.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 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utility/CMakeFiles/utility.dir/strutil.cpp.o -MF CMakeFiles/utility.dir/strutil.cpp.o.d -o CMakeFiles/utility.dir/strutil.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/strutil.cpp [ 41%] Building CXX object utility/CMakeFiles/utility.dir/types.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT utility/CMakeFiles/utility.dir/types.cpp.o -MF CMakeFiles/utility.dir/types.cpp.o.d -o CMakeFiles/utility.dir/types.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/types.cpp [ 42%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StreamerBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 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builtins/CMakeFiles/moose_builtins.dir/StreamerBase.cpp.o -MF CMakeFiles/moose_builtins.dir/StreamerBase.cpp.o.d -o CMakeFiles/moose_builtins.dir/StreamerBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/StreamerBase.cpp [ 43%] Building CXX object utility/CMakeFiles/utility.dir/setupenv.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT utility/CMakeFiles/utility.dir/setupenv.cpp.o -MF CMakeFiles/utility.dir/setupenv.cpp.o.d -o CMakeFiles/utility.dir/setupenv.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/setupenv.cpp [ 43%] Building CXX object utility/CMakeFiles/utility.dir/numutil.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 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utility/CMakeFiles/utility.dir/numutil.cpp.o -MF CMakeFiles/utility.dir/numutil.cpp.o.d -o CMakeFiles/utility.dir/numutil.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/numutil.cpp [ 43%] Building CXX object utility/CMakeFiles/utility.dir/Annotator.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT utility/CMakeFiles/utility.dir/Annotator.cpp.o -MF CMakeFiles/utility.dir/Annotator.cpp.o.d -o CMakeFiles/utility.dir/Annotator.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/Annotator.cpp [ 44%] Building CXX object utility/CMakeFiles/utility.dir/Vec.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 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utility/CMakeFiles/utility.dir/Vec.cpp.o -MF CMakeFiles/utility.dir/Vec.cpp.o.d -o CMakeFiles/utility.dir/Vec.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/Vec.cpp [ 44%] Building CXX object utility/CMakeFiles/utility.dir/cnpy.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT utility/CMakeFiles/utility.dir/cnpy.cpp.o -MF CMakeFiles/utility.dir/cnpy.cpp.o.d -o CMakeFiles/utility.dir/cnpy.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/cnpy.cpp [ 44%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Streamer.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/Streamer.cpp.o -MF CMakeFiles/moose_builtins.dir/Streamer.cpp.o.d -o CMakeFiles/moose_builtins.dir/Streamer.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Streamer.cpp /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/cnpy.cpp: In function ‘bool cnpy2::is_valid_numpy_file(FILE*)’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/utility/cnpy.cpp:88:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 88 | fread( buffer, sizeof(char), __pre__size__, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConcBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/CaConcBase.cpp.o -MF CMakeFiles/biophysics.dir/CaConcBase.cpp.o.d -o CMakeFiles/biophysics.dir/CaConcBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/CaConcBase.cpp [ 45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Stats.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/Stats.cpp.o -MF CMakeFiles/moose_builtins.dir/Stats.cpp.o.d -o CMakeFiles/moose_builtins.dir/Stats.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Stats.cpp [ 45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o -MF CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o.d -o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/Interpol2D.cpp [ 45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o -MF CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o.d -o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/HDF5WriterBase.cpp [ 46%] Linking CXX static library libutility.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility && /usr/bin/cmake -P CMakeFiles/utility.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/utility && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility.dir/link.txt --verbose=1 /usr/bin/ar qc libutility.a CMakeFiles/utility.dir/strutil.cpp.o CMakeFiles/utility.dir/types.cpp.o CMakeFiles/utility.dir/setupenv.cpp.o CMakeFiles/utility.dir/numutil.cpp.o CMakeFiles/utility.dir/Annotator.cpp.o CMakeFiles/utility.dir/Vec.cpp.o CMakeFiles/utility.dir/cnpy.cpp.o /usr/bin/ranlib libutility.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 46%] Built target utility /usr/bin/gmake -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh/CMakeFiles/mesh.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 46%] Building CXX object mesh/CMakeFiles/mesh.dir/ChemCompt.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/ChemCompt.cpp.o -MF CMakeFiles/mesh.dir/ChemCompt.cpp.o.d -o CMakeFiles/mesh.dir/ChemCompt.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/ChemCompt.cpp [ 47%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConc.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/CaConc.cpp.o -MF CMakeFiles/biophysics.dir/CaConc.cpp.o.d -o CMakeFiles/biophysics.dir/CaConc.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/CaConc.cpp [ 47%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MgBlock.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/MgBlock.cpp.o -MF CMakeFiles/biophysics.dir/MgBlock.cpp.o.d -o CMakeFiles/biophysics.dir/MgBlock.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MgBlock.cpp [ 47%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Nernst.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/Nernst.cpp.o -MF CMakeFiles/biophysics.dir/Nernst.cpp.o.d -o CMakeFiles/biophysics.dir/Nernst.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/Nernst.cpp [ 48%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Neuron.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/Neuron.cpp.o -MF CMakeFiles/biophysics.dir/Neuron.cpp.o.d -o CMakeFiles/biophysics.dir/Neuron.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/Neuron.cpp /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/HDF5WriterBase.cpp: In function ‘require_group(long, std::__cxx11::basic_string, std::allocator >)’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/HDF5WriterBase.cpp:107:12: warning: ‘current’ may be used uninitialized [-Wmaybe-uninitialized] 107 | return current; | ^~~~~~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/HDF5WriterBase.cpp:87:24: note: ‘current’ was declared here 87 | hid_t prev = file, current; | ^~~~~~~ [ 49%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshCompt.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/MeshCompt.cpp.o -MF CMakeFiles/mesh.dir/MeshCompt.cpp.o.d -o CMakeFiles/mesh.dir/MeshCompt.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/MeshCompt.cpp [ 49%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshEntry.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/MeshEntry.cpp.o -MF CMakeFiles/mesh.dir/MeshEntry.cpp.o.d -o CMakeFiles/mesh.dir/MeshEntry.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/MeshEntry.cpp [ 49%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadCell.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/ReadCell.cpp.o -MF CMakeFiles/biophysics.dir/ReadCell.cpp.o.d -o CMakeFiles/biophysics.dir/ReadCell.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/ReadCell.cpp [ 49%] Building CXX object mesh/CMakeFiles/mesh.dir/CubeMesh.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/CubeMesh.cpp.o -MF CMakeFiles/mesh.dir/CubeMesh.cpp.o.d -o CMakeFiles/mesh.dir/CubeMesh.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/CubeMesh.cpp [ 50%] Building CXX object mesh/CMakeFiles/mesh.dir/CylBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/CylBase.cpp.o -MF CMakeFiles/mesh.dir/CylBase.cpp.o.d -o CMakeFiles/mesh.dir/CylBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/CylBase.cpp [ 50%] Building CXX object mesh/CMakeFiles/mesh.dir/CylMesh.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/CylMesh.cpp.o -MF CMakeFiles/mesh.dir/CylMesh.cpp.o.d -o CMakeFiles/mesh.dir/CylMesh.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/CylMesh.cpp [ 51%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o -MF CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o.d -o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/NSDFWriter.cpp [ 51%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o -MF CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o.d -o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/HDF5DataWriter.cpp [ 52%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroNode.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/NeuroNode.cpp.o -MF CMakeFiles/mesh.dir/NeuroNode.cpp.o.d -o CMakeFiles/mesh.dir/NeuroNode.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/NeuroNode.cpp /usr/bin/gmake -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mpi /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mpi /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mpi/CMakeFiles/moose_mpi.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 52%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/PostMaster.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mpi && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mpi/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mpi/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mpi/CMakeFiles/moose_mpi.dir/PostMaster.cpp.o -MF CMakeFiles/moose_mpi.dir/PostMaster.cpp.o.d -o CMakeFiles/moose_mpi.dir/PostMaster.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mpi/PostMaster.cpp [ 53%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/testMpi.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mpi && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mpi/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mpi/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mpi/CMakeFiles/moose_mpi.dir/testMpi.cpp.o -MF CMakeFiles/moose_mpi.dir/testMpi.cpp.o.d -o CMakeFiles/moose_mpi.dir/testMpi.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mpi/testMpi.cpp [ 54%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SwcSegment.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/SwcSegment.cpp.o -MF CMakeFiles/biophysics.dir/SwcSegment.cpp.o.d -o CMakeFiles/biophysics.dir/SwcSegment.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/SwcSegment.cpp [ 54%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadSwc.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/ReadSwc.cpp.o -MF CMakeFiles/biophysics.dir/ReadSwc.cpp.o.d -o CMakeFiles/biophysics.dir/ReadSwc.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/ReadSwc.cpp [ 54%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynChan.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/SynChan.cpp.o -MF CMakeFiles/biophysics.dir/SynChan.cpp.o.d -o CMakeFiles/biophysics.dir/SynChan.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/SynChan.cpp [ 54%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroMesh.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/NeuroMesh.cpp.o -MF CMakeFiles/mesh.dir/NeuroMesh.cpp.o.d -o CMakeFiles/mesh.dir/NeuroMesh.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/NeuroMesh.cpp [ 54%] Linking CXX static library libmoose_mpi.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mpi && /usr/bin/cmake -P CMakeFiles/moose_mpi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mpi && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_mpi.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_mpi.a CMakeFiles/moose_mpi.dir/PostMaster.cpp.o CMakeFiles/moose_mpi.dir/testMpi.cpp.o /usr/bin/ranlib libmoose_mpi.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 54%] Built target moose_mpi /usr/bin/gmake -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/signeur /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/signeur /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/signeur/CMakeFiles/signeur.dir/DependInfo.cmake "--color=" /usr/bin/gmake -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/depend gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve/CMakeFiles/ksolve.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 55%] Building CXX object signeur/CMakeFiles/signeur.dir/Adaptor.cpp.o gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/build cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/signeur && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/signeur/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/signeur/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/signeur/../kinetics -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT signeur/CMakeFiles/signeur.dir/Adaptor.cpp.o -MF CMakeFiles/signeur.dir/Adaptor.cpp.o.d -o CMakeFiles/signeur.dir/Adaptor.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/signeur/Adaptor.cpp gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 55%] Building CXX object ksolve/CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o -MF CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o.d -o CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/KinSparseMatrix.cpp [ 56%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o -MF CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o.d -o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/SpikeStats.cpp [ 57%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePool.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/ZombiePool.cpp.o -MF CMakeFiles/ksolve.dir/ZombiePool.cpp.o.d -o CMakeFiles/ksolve.dir/ZombiePool.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/ZombiePool.cpp [ 57%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieFunction.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/ZombieFunction.cpp.o -MF CMakeFiles/ksolve.dir/ZombieFunction.cpp.o.d -o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/ZombieFunction.cpp [ 57%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o -MF CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o.d -o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/testBuiltins.cpp [ 57%] Building CXX object signeur/CMakeFiles/signeur.dir/testSigNeur.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/signeur && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/signeur/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/signeur/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/signeur/../kinetics -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT signeur/CMakeFiles/signeur.dir/testSigNeur.cpp.o -MF CMakeFiles/signeur.dir/testSigNeur.cpp.o.d -o CMakeFiles/signeur.dir/testSigNeur.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/signeur/testSigNeur.cpp [ 58%] Building CXX object biophysics/CMakeFiles/biophysics.dir/NMDAChan.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/NMDAChan.cpp.o -MF CMakeFiles/biophysics.dir/NMDAChan.cpp.o.d -o CMakeFiles/biophysics.dir/NMDAChan.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/NMDAChan.cpp [ 58%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineEntry.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/SpineEntry.cpp.o -MF CMakeFiles/mesh.dir/SpineEntry.cpp.o.d -o CMakeFiles/mesh.dir/SpineEntry.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/SpineEntry.cpp [ 58%] Linking CXX static library libsigneur.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/signeur && /usr/bin/cmake -P CMakeFiles/signeur.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/signeur && /usr/bin/cmake -E cmake_link_script CMakeFiles/signeur.dir/link.txt --verbose=1 /usr/bin/ar qc libsigneur.a CMakeFiles/signeur.dir/Adaptor.cpp.o CMakeFiles/signeur.dir/testSigNeur.cpp.o /usr/bin/ranlib libsigneur.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 58%] Built target signeur /usr/bin/gmake -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve/CMakeFiles/hsolve.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 59%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveStruct.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/HSolveStruct.cpp.o -MF CMakeFiles/hsolve.dir/HSolveStruct.cpp.o.d -o CMakeFiles/hsolve.dir/HSolveStruct.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolveStruct.cpp [ 59%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HinesMatrix.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/HinesMatrix.cpp.o -MF CMakeFiles/hsolve.dir/HinesMatrix.cpp.o.d -o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HinesMatrix.cpp [ 59%] Building CXX object biophysics/CMakeFiles/biophysics.dir/testBiophysics.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/testBiophysics.cpp.o -MF CMakeFiles/biophysics.dir/testBiophysics.cpp.o.d -o CMakeFiles/biophysics.dir/testBiophysics.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/testBiophysics.cpp [ 59%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o -MF CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o.d -o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/ZombieBufPool.cpp [ 59%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testNSDF.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/external/muparser/include -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/scheduling -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT builtins/CMakeFiles/moose_builtins.dir/testNSDF.cpp.o -MF CMakeFiles/moose_builtins.dir/testNSDF.cpp.o.d -o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/testNSDF.cpp [ 60%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieReac.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/ZombieReac.cpp.o -MF CMakeFiles/ksolve.dir/ZombieReac.cpp.o.d -o CMakeFiles/ksolve.dir/ZombieReac.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/ZombieReac.cpp [ 61%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o -MF CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o.d -o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/IzhikevichNrn.cpp [ 61%] Building CXX object biophysics/CMakeFiles/biophysics.dir/DifShell.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/DifShell.cpp.o -MF CMakeFiles/biophysics.dir/DifShell.cpp.o.d -o CMakeFiles/biophysics.dir/DifShell.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/DifShell.cpp [ 61%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieEnz.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/ZombieEnz.cpp.o -MF CMakeFiles/ksolve.dir/ZombieEnz.cpp.o.d -o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/ZombieEnz.cpp [ 62%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolvePassive.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/HSolvePassive.cpp.o -MF CMakeFiles/hsolve.dir/HSolvePassive.cpp.o.d -o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolvePassive.cpp [ 63%] Linking CXX static library libmoose_builtins.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/cmake -P CMakeFiles/moose_builtins.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/builtins && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_builtins.dir/link.txt --verbose=1 [ 63%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o -MF CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o.d -o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/ZombieMMenz.cpp /usr/bin/ar qc libmoose_builtins.a CMakeFiles/moose_builtins.dir/Arith.cpp.o CMakeFiles/moose_builtins.dir/Group.cpp.o CMakeFiles/moose_builtins.dir/Mstring.cpp.o CMakeFiles/moose_builtins.dir/Func.cpp.o CMakeFiles/moose_builtins.dir/Function.cpp.o CMakeFiles/moose_builtins.dir/Variable.cpp.o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o CMakeFiles/moose_builtins.dir/TableBase.cpp.o CMakeFiles/moose_builtins.dir/Table.cpp.o CMakeFiles/moose_builtins.dir/Interpol.cpp.o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o CMakeFiles/moose_builtins.dir/StreamerBase.cpp.o CMakeFiles/moose_builtins.dir/Streamer.cpp.o CMakeFiles/moose_builtins.dir/Stats.cpp.o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o /usr/bin/ranlib libmoose_builtins.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 63%] Built target moose_builtins [ 64%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o -MF CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o.d -o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/VoxelPoolsBase.cpp [ 64%] Building CXX object hsolve/CMakeFiles/hsolve.dir/RateLookup.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/RateLookup.cpp.o -MF CMakeFiles/hsolve.dir/RateLookup.cpp.o.d -o CMakeFiles/hsolve.dir/RateLookup.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/RateLookup.cpp [ 64%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPools.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/VoxelPools.cpp.o -MF CMakeFiles/ksolve.dir/VoxelPools.cpp.o.d -o CMakeFiles/ksolve.dir/VoxelPools.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/VoxelPools.cpp [ 64%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActive.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/HSolveActive.cpp.o -MF CMakeFiles/hsolve.dir/HSolveActive.cpp.o.d -o CMakeFiles/hsolve.dir/HSolveActive.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolveActive.cpp /usr/bin/gmake -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/diffusion /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/diffusion/CMakeFiles/diffusion.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 64%] Building CXX object diffusion/CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/diffusion && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../ksolve -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT diffusion/CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o -MF CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o.d -o CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/FastMatrixElim.cpp [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o -MF CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o.d -o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/GssaVoxelPools.cpp [ 65%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Leakage.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/Leakage.cpp.o -MF CMakeFiles/biophysics.dir/Leakage.cpp.o.d -o CMakeFiles/biophysics.dir/Leakage.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/Leakage.cpp [ 65%] Building CXX object ksolve/CMakeFiles/ksolve.dir/RateTerm.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/RateTerm.cpp.o -MF CMakeFiles/ksolve.dir/RateTerm.cpp.o.d -o CMakeFiles/ksolve.dir/RateTerm.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/RateTerm.cpp [ 66%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o -MF CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o.d -o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolveActiveSetup.cpp [ 67%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VectorTable.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/VectorTable.cpp.o -MF CMakeFiles/biophysics.dir/VectorTable.cpp.o.d -o CMakeFiles/biophysics.dir/VectorTable.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/VectorTable.cpp [ 67%] Building CXX object ksolve/CMakeFiles/ksolve.dir/FuncTerm.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/FuncTerm.cpp.o -MF CMakeFiles/ksolve.dir/FuncTerm.cpp.o.d -o CMakeFiles/ksolve.dir/FuncTerm.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/FuncTerm.cpp [ 68%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Stoich.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/Stoich.cpp.o -MF CMakeFiles/ksolve.dir/Stoich.cpp.o.d -o CMakeFiles/ksolve.dir/Stoich.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/Stoich.cpp [ 68%] Building CXX object diffusion/CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/diffusion && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../ksolve -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT diffusion/CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o -MF CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o.d -o CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/DiffPoolVec.cpp [ 69%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineMesh.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/SpineMesh.cpp.o -MF CMakeFiles/mesh.dir/SpineMesh.cpp.o.d -o CMakeFiles/mesh.dir/SpineMesh.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/SpineMesh.cpp [ 69%] Building CXX object mesh/CMakeFiles/mesh.dir/PsdMesh.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/PsdMesh.cpp.o -MF CMakeFiles/mesh.dir/PsdMesh.cpp.o.d -o CMakeFiles/mesh.dir/PsdMesh.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/PsdMesh.cpp [ 70%] Building CXX object diffusion/CMakeFiles/diffusion.dir/Dsolve.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/diffusion && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../ksolve -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT diffusion/CMakeFiles/diffusion.dir/Dsolve.cpp.o -MF CMakeFiles/diffusion.dir/Dsolve.cpp.o.d -o CMakeFiles/diffusion.dir/Dsolve.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/Dsolve.cpp [ 70%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveInterface.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/HSolveInterface.cpp.o -MF CMakeFiles/hsolve.dir/HSolveInterface.cpp.o.d -o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolveInterface.cpp [ 70%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o -MF CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o.d -o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MarkovRateTable.cpp [ 71%] Building CXX object mesh/CMakeFiles/mesh.dir/testMesh.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT mesh/CMakeFiles/mesh.dir/testMesh.cpp.o -MF CMakeFiles/mesh.dir/testMesh.cpp.o.d -o CMakeFiles/mesh.dir/testMesh.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/mesh/testMesh.cpp [ 72%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolve.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/HSolve.cpp.o -MF CMakeFiles/hsolve.dir/HSolve.cpp.o.d -o CMakeFiles/hsolve.dir/HSolve.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolve.cpp [ 72%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Ksolve.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/Ksolve.cpp.o -MF CMakeFiles/ksolve.dir/Ksolve.cpp.o.d -o CMakeFiles/ksolve.dir/Ksolve.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/Ksolve.cpp /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolve.cpp: In member function ‘void HSolve::zombify(Eref) const’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolve.cpp:218:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 218 | for ( i = compartmentId_.begin(); i != compartmentId_.end(); ++i ) | ^~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolve.cpp:222:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 222 | temp.clear(); | ^~~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolve.cpp:226:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 226 | for ( i = caConcId_.begin(); i != caConcId_.end(); ++i ) | ^~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolve.cpp:229:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 229 | temp.clear(); | ^~~~ [ 72%] Linking CXX static library libmesh.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/cmake -P CMakeFiles/mesh.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mesh.dir/link.txt --verbose=1 /usr/bin/ar qc libmesh.a CMakeFiles/mesh.dir/ChemCompt.cpp.o CMakeFiles/mesh.dir/MeshCompt.cpp.o CMakeFiles/mesh.dir/MeshEntry.cpp.o CMakeFiles/mesh.dir/CubeMesh.cpp.o CMakeFiles/mesh.dir/CylBase.cpp.o CMakeFiles/mesh.dir/CylMesh.cpp.o CMakeFiles/mesh.dir/NeuroNode.cpp.o CMakeFiles/mesh.dir/NeuroMesh.cpp.o CMakeFiles/mesh.dir/SpineEntry.cpp.o CMakeFiles/mesh.dir/SpineMesh.cpp.o CMakeFiles/mesh.dir/PsdMesh.cpp.o CMakeFiles/mesh.dir/testMesh.cpp.o /usr/bin/ranlib libmesh.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 72%] Built target mesh [ 73%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Gsolve.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/Gsolve.cpp.o -MF CMakeFiles/ksolve.dir/Gsolve.cpp.o.d -o CMakeFiles/ksolve.dir/Gsolve.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/Gsolve.cpp [ 73%] Building CXX object diffusion/CMakeFiles/diffusion.dir/testDiffusion.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/diffusion && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/../ksolve -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT diffusion/CMakeFiles/diffusion.dir/testDiffusion.cpp.o -MF CMakeFiles/diffusion.dir/testDiffusion.cpp.o.d -o CMakeFiles/diffusion.dir/testDiffusion.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/diffusion/testDiffusion.cpp [ 73%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovChannel.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/MarkovChannel.cpp.o -MF CMakeFiles/biophysics.dir/MarkovChannel.cpp.o.d -o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MarkovChannel.cpp [ 73%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o -MF CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o.d -o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/ZombiePoolInterface.cpp [ 73%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveUtils.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/HSolveUtils.cpp.o -MF CMakeFiles/hsolve.dir/HSolveUtils.cpp.o.d -o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/HSolveUtils.cpp [ 73%] Building CXX object hsolve/CMakeFiles/hsolve.dir/testHSolve.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/testHSolve.cpp.o -MF CMakeFiles/hsolve.dir/testHSolve.cpp.o.d -o CMakeFiles/hsolve.dir/testHSolve.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/testHSolve.cpp [ 74%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MatrixOps.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/MatrixOps.cpp.o -MF CMakeFiles/biophysics.dir/MatrixOps.cpp.o.d -o CMakeFiles/biophysics.dir/MatrixOps.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MatrixOps.cpp /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MatrixOps.cpp: In function ‘matMatAdd(std::vector >, std::allocator > > >*, std::vector >, std::allocator > > >*, double, double, unsigned int)’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MatrixOps.cpp:128:17: warning: ‘C’ may be used uninitialized [-Wmaybe-uninitialized] 128 | Matrix *C; | ^ [ 75%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o -MF CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o.d -o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/ZombieCompartment.cpp [ 75%] Linking CXX static library libdiffusion.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/diffusion && /usr/bin/cmake -P CMakeFiles/diffusion.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/diffusion.dir/link.txt --verbose=1 /usr/bin/ar qc libdiffusion.a CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o CMakeFiles/diffusion.dir/Dsolve.cpp.o CMakeFiles/diffusion.dir/testDiffusion.cpp.o /usr/bin/ranlib libdiffusion.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 75%] Built target diffusion /usr/bin/gmake -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 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-I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT device/CMakeFiles/device.dir/PulseGen.cpp.o -MF CMakeFiles/device.dir/PulseGen.cpp.o.d -o CMakeFiles/device.dir/PulseGen.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/PulseGen.cpp [ 75%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o -MF CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o.d -o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MarkovSolverBase.cpp [ 76%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolver.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/MarkovSolver.cpp.o -MF CMakeFiles/biophysics.dir/MarkovSolver.cpp.o.d -o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MarkovSolver.cpp [ 76%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VClamp.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/VClamp.cpp.o -MF CMakeFiles/biophysics.dir/VClamp.cpp.o.d -o CMakeFiles/biophysics.dir/VClamp.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/VClamp.cpp [ 76%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o -MF CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o.d -o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/ZombieCaConc.cpp /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MarkovSolver.cpp: In member function ‘MarkovSolver::computePadeApproximant(std::vector >, std::allocator > > >*, unsigned int)’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MarkovSolver.cpp:211:27: warning: ‘U’ may be used uninitialized [-Wmaybe-uninitialized] 211 | VplusU = matMatAdd( U, V, 1.0, 1.0 ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MarkovSolver.cpp:84:17: note: ‘U’ was declared here 84 | Matrix *U, *V, *VplusU, *VminusU, *invVminusU, *Qpower; | ^ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MarkovSolver.cpp:211:27: warning: ‘V’ may be used uninitialized [-Wmaybe-uninitialized] 211 | VplusU = matMatAdd( U, V, 1.0, 1.0 ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MarkovSolver.cpp:84:21: note: ‘V’ was declared here 84 | Matrix *U, *V, *VplusU, *VminusU, *invVminusU, *Qpower; | ^ /usr/bin/gmake -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/benchmarks /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/benchmarks /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/benchmarks/CMakeFiles/benchmarks.dir/DependInfo.cmake "--color=" [ 77%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/../external/debug -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT hsolve/CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o -MF CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o.d -o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/hsolve/ZombieHHChannel.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 77%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/benchmarks.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/benchmarks && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/benchmarks/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/benchmarks/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT benchmarks/CMakeFiles/benchmarks.dir/benchmarks.cpp.o -MF CMakeFiles/benchmarks.dir/benchmarks.cpp.o.d -o CMakeFiles/benchmarks.dir/benchmarks.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/benchmarks/benchmarks.cpp [ 78%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/kineticMarks.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/benchmarks && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/benchmarks/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/benchmarks/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT benchmarks/CMakeFiles/benchmarks.dir/kineticMarks.cpp.o -MF CMakeFiles/benchmarks.dir/kineticMarks.cpp.o.d -o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/benchmarks/kineticMarks.cpp [ 78%] Building CXX object ksolve/CMakeFiles/ksolve.dir/testKsolve.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/testKsolve.cpp.o -MF CMakeFiles/ksolve.dir/testKsolve.cpp.o.d -o CMakeFiles/ksolve.dir/testKsolve.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/testKsolve.cpp [ 78%] Linking CXX static library libbenchmarks.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/benchmarks && /usr/bin/cmake -P CMakeFiles/benchmarks.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/benchmarks && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmarks.dir/link.txt --verbose=1 /usr/bin/ar qc libbenchmarks.a CMakeFiles/benchmarks.dir/benchmarks.cpp.o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o /usr/bin/ranlib libbenchmarks.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 78%] Built target benchmarks [ 79%] Building CXX object ksolve/CMakeFiles/ksolve.dir/SteadyStateGsl.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../builtins -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../mesh -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT ksolve/CMakeFiles/ksolve.dir/SteadyStateGsl.cpp.o -MF CMakeFiles/ksolve.dir/SteadyStateGsl.cpp.o.d -o CMakeFiles/ksolve.dir/SteadyStateGsl.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/ksolve/SteadyStateGsl.cpp [ 79%] Linking CXX static library libhsolve.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/cmake -P CMakeFiles/hsolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/hsolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/hsolve.dir/link.txt --verbose=1 /usr/bin/ar qc libhsolve.a CMakeFiles/hsolve.dir/HSolveStruct.cpp.o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o CMakeFiles/hsolve.dir/RateLookup.cpp.o CMakeFiles/hsolve.dir/HSolveActive.cpp.o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o CMakeFiles/hsolve.dir/HSolve.cpp.o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o CMakeFiles/hsolve.dir/testHSolve.cpp.o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o /usr/bin/ranlib libhsolve.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 79%] Built target hsolve /usr/bin/gmake -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics/CMakeFiles/kinetics.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 80%] Building CXX object kinetics/CMakeFiles/kinetics.dir/PoolBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/PoolBase.cpp.o -MF CMakeFiles/kinetics.dir/PoolBase.cpp.o.d -o CMakeFiles/kinetics.dir/PoolBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/PoolBase.cpp [ 80%] Building CXX object device/CMakeFiles/device.dir/DiffAmp.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/device && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT device/CMakeFiles/device.dir/DiffAmp.cpp.o -MF CMakeFiles/device.dir/DiffAmp.cpp.o.d -o CMakeFiles/device.dir/DiffAmp.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/DiffAmp.cpp [ 81%] Building CXX object device/CMakeFiles/device.dir/PIDController.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/device && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT device/CMakeFiles/device.dir/PIDController.cpp.o -MF CMakeFiles/device.dir/PIDController.cpp.o.d -o CMakeFiles/device.dir/PIDController.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/PIDController.cpp [ 81%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Spine.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/Spine.cpp.o -MF CMakeFiles/biophysics.dir/Spine.cpp.o.d -o CMakeFiles/biophysics.dir/Spine.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/Spine.cpp [ 82%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../synapse -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/.. -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT biophysics/CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o -MF CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o.d -o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/biophysics/MarkovGslSolver.cpp [ 82%] Building CXX object device/CMakeFiles/device.dir/RC.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/device && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/../basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT device/CMakeFiles/device.dir/RC.cpp.o -MF CMakeFiles/device.dir/RC.cpp.o.d -o CMakeFiles/device.dir/RC.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/device/RC.cpp [ 82%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Pool.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/Pool.cpp.o -MF CMakeFiles/kinetics.dir/Pool.cpp.o.d -o CMakeFiles/kinetics.dir/Pool.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/Pool.cpp [ 83%] Building CXX object kinetics/CMakeFiles/kinetics.dir/BufPool.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/BufPool.cpp.o -MF CMakeFiles/kinetics.dir/BufPool.cpp.o.d -o CMakeFiles/kinetics.dir/BufPool.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/BufPool.cpp [ 83%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReacBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/ReacBase.cpp.o -MF CMakeFiles/kinetics.dir/ReacBase.cpp.o.d -o CMakeFiles/kinetics.dir/ReacBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/ReacBase.cpp [ 83%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Reac.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/Reac.cpp.o -MF CMakeFiles/kinetics.dir/Reac.cpp.o.d -o CMakeFiles/kinetics.dir/Reac.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/Reac.cpp [ 84%] Building CXX object kinetics/CMakeFiles/kinetics.dir/EnzBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/EnzBase.cpp.o -MF CMakeFiles/kinetics.dir/EnzBase.cpp.o.d -o CMakeFiles/kinetics.dir/EnzBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/EnzBase.cpp [ 85%] Linking CXX static library libdevice.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/device && /usr/bin/cmake -P CMakeFiles/device.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/device && /usr/bin/cmake -E cmake_link_script CMakeFiles/device.dir/link.txt --verbose=1 /usr/bin/ar qc libdevice.a CMakeFiles/device.dir/PulseGen.cpp.o CMakeFiles/device.dir/DiffAmp.cpp.o CMakeFiles/device.dir/PIDController.cpp.o CMakeFiles/device.dir/RC.cpp.o /usr/bin/ranlib libdevice.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 85%] Built target device [ 85%] Building CXX object kinetics/CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o -MF CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o.d -o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/CplxEnzBase.cpp [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Enz.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/Enz.cpp.o -MF CMakeFiles/kinetics.dir/Enz.cpp.o.d -o CMakeFiles/kinetics.dir/Enz.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/Enz.cpp [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/MMenz.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/MMenz.cpp.o -MF CMakeFiles/kinetics.dir/MMenz.cpp.o.d -o CMakeFiles/kinetics.dir/MMenz.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/MMenz.cpp [ 86%] Linking CXX static library libksolve.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/cmake -P CMakeFiles/ksolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/ksolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksolve.dir/link.txt --verbose=1 [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Species.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/Species.cpp.o -MF CMakeFiles/kinetics.dir/Species.cpp.o.d -o CMakeFiles/kinetics.dir/Species.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/Species.cpp [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadKkit.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/ReadKkit.cpp.o -MF CMakeFiles/kinetics.dir/ReadKkit.cpp.o.d -o CMakeFiles/kinetics.dir/ReadKkit.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/ReadKkit.cpp /usr/bin/ar qc libksolve.a CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o CMakeFiles/ksolve.dir/ZombiePool.cpp.o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o CMakeFiles/ksolve.dir/ZombieReac.cpp.o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o CMakeFiles/ksolve.dir/VoxelPools.cpp.o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o CMakeFiles/ksolve.dir/RateTerm.cpp.o CMakeFiles/ksolve.dir/FuncTerm.cpp.o CMakeFiles/ksolve.dir/Stoich.cpp.o CMakeFiles/ksolve.dir/Ksolve.cpp.o CMakeFiles/ksolve.dir/Gsolve.cpp.o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o CMakeFiles/ksolve.dir/testKsolve.cpp.o CMakeFiles/ksolve.dir/SteadyStateGsl.cpp.o /usr/bin/ranlib libksolve.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 87%] Built target ksolve /usr/bin/gmake -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse/CMakeFiles/synapse.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 88%] Building CXX object synapse/CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT synapse/CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o -MF CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o.d -o CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/GraupnerBrunel2012CaPlasticitySynHandler.cpp [ 88%] Linking CXX static library libbiophysics.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/cmake -P CMakeFiles/biophysics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/biophysics && /usr/bin/cmake -E cmake_link_script CMakeFiles/biophysics.dir/link.txt --verbose=1 [ 88%] Building CXX object kinetics/CMakeFiles/kinetics.dir/WriteKkit.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/WriteKkit.cpp.o -MF CMakeFiles/kinetics.dir/WriteKkit.cpp.o.d -o CMakeFiles/kinetics.dir/WriteKkit.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/WriteKkit.cpp [ 89%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadCspace.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/ReadCspace.cpp.o -MF CMakeFiles/kinetics.dir/ReadCspace.cpp.o.d -o CMakeFiles/kinetics.dir/ReadCspace.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/ReadCspace.cpp /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/WriteKkit.cpp: In function ‘void writePlot(std::ofstream&, Id, std::string, std::string, double, double)’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/WriteKkit.cpp:281:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 281 | if ( pos == string::npos ) | ^~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/WriteKkit.cpp:283:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 283 | if ( pos == string::npos ) | ^~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/WriteKkit.cpp: In function ‘void storePlotMsgs(Id, std::vector >&, Id, std::string, Id)’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/WriteKkit.cpp:422:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 422 | if ( pos == string::npos ) | ^~ In file included from /usr/include/c++/14/cassert:44, from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/header.h:29, from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/WriteKkit.cpp:15: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/WriteKkit.cpp:424:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 424 | assert( pos != string::npos ); | ^~~~~~ /usr/bin/ar qc libbiophysics.a CMakeFiles/biophysics.dir/IntFire.cpp.o CMakeFiles/biophysics.dir/SpikeGen.cpp.o CMakeFiles/biophysics.dir/RandSpike.cpp.o CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o CMakeFiles/biophysics.dir/CompartmentBase.cpp.o CMakeFiles/biophysics.dir/Compartment.cpp.o CMakeFiles/biophysics.dir/SymCompartment.cpp.o CMakeFiles/biophysics.dir/GapJunction.cpp.o CMakeFiles/biophysics.dir/ChanBase.cpp.o CMakeFiles/biophysics.dir/ChanCommon.cpp.o CMakeFiles/biophysics.dir/HHChannel.cpp.o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o CMakeFiles/biophysics.dir/HHGate.cpp.o CMakeFiles/biophysics.dir/HHGate2D.cpp.o CMakeFiles/biophysics.dir/CaConcBase.cpp.o CMakeFiles/biophysics.dir/CaConc.cpp.o CMakeFiles/biophysics.dir/MgBlock.cpp.o CMakeFiles/biophysics.dir/Nernst.cpp.o CMakeFiles/biophysics.dir/Neuron.cpp.o CMakeFiles/biophysics.dir/ReadCell.cpp.o CMakeFiles/biophysics.dir/SwcSegment.cpp.o CMakeFiles/biophysics.dir/ReadSwc.cpp.o CMakeFiles/biophysics.dir/SynChan.cpp.o CMakeFiles/biophysics.dir/NMDAChan.cpp.o CMakeFiles/biophysics.dir/testBiophysics.cpp.o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o CMakeFiles/biophysics.dir/DifShell.cpp.o CMakeFiles/biophysics.dir/Leakage.cpp.o CMakeFiles/biophysics.dir/VectorTable.cpp.o CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o CMakeFiles/biophysics.dir/MatrixOps.cpp.o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o CMakeFiles/biophysics.dir/VClamp.cpp.o CMakeFiles/biophysics.dir/Spine.cpp.o CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o /usr/bin/ranlib libbiophysics.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 89%] Built target biophysics [ 89%] Building CXX object synapse/CMakeFiles/synapse.dir/RollingMatrix.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT synapse/CMakeFiles/synapse.dir/RollingMatrix.cpp.o -MF CMakeFiles/synapse.dir/RollingMatrix.cpp.o.d -o CMakeFiles/synapse.dir/RollingMatrix.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/RollingMatrix.cpp [ 90%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynHandler.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT synapse/CMakeFiles/synapse.dir/STDPSynHandler.cpp.o -MF CMakeFiles/synapse.dir/STDPSynHandler.cpp.o.d -o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/STDPSynHandler.cpp [ 90%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynapse.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT synapse/CMakeFiles/synapse.dir/STDPSynapse.cpp.o -MF CMakeFiles/synapse.dir/STDPSynapse.cpp.o.d -o CMakeFiles/synapse.dir/STDPSynapse.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/STDPSynapse.cpp [ 90%] Building CXX object kinetics/CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o -MF CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o.d -o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/lookupVolumeFromMesh.cpp [ 90%] Building CXX object synapse/CMakeFiles/synapse.dir/SeqSynHandler.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT synapse/CMakeFiles/synapse.dir/SeqSynHandler.cpp.o -MF CMakeFiles/synapse.dir/SeqSynHandler.cpp.o.d -o CMakeFiles/synapse.dir/SeqSynHandler.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/SeqSynHandler.cpp [ 90%] Building CXX object kinetics/CMakeFiles/kinetics.dir/testKinetics.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/../utility -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT kinetics/CMakeFiles/kinetics.dir/testKinetics.cpp.o -MF CMakeFiles/kinetics.dir/testKinetics.cpp.o.d -o CMakeFiles/kinetics.dir/testKinetics.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/kinetics/testKinetics.cpp [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT synapse/CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o -MF CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o.d -o CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/SimpleSynHandler.cpp [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/SynHandlerBase.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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/usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT synapse/CMakeFiles/synapse.dir/Synapse.cpp.o -MF CMakeFiles/synapse.dir/Synapse.cpp.o.d -o CMakeFiles/synapse.dir/Synapse.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/Synapse.cpp [ 92%] Building CXX object synapse/CMakeFiles/synapse.dir/testSynapse.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../utility -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../kinetics -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/../external/muparser/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT synapse/CMakeFiles/synapse.dir/testSynapse.cpp.o -MF CMakeFiles/synapse.dir/testSynapse.cpp.o.d -o CMakeFiles/synapse.dir/testSynapse.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/synapse/testSynapse.cpp [ 93%] Linking CXX static library libkinetics.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/cmake -P CMakeFiles/kinetics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/kinetics && /usr/bin/cmake -E cmake_link_script CMakeFiles/kinetics.dir/link.txt --verbose=1 /usr/bin/ar qc libkinetics.a CMakeFiles/kinetics.dir/PoolBase.cpp.o CMakeFiles/kinetics.dir/Pool.cpp.o CMakeFiles/kinetics.dir/BufPool.cpp.o CMakeFiles/kinetics.dir/ReacBase.cpp.o CMakeFiles/kinetics.dir/Reac.cpp.o CMakeFiles/kinetics.dir/EnzBase.cpp.o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o CMakeFiles/kinetics.dir/Enz.cpp.o CMakeFiles/kinetics.dir/MMenz.cpp.o CMakeFiles/kinetics.dir/Species.cpp.o CMakeFiles/kinetics.dir/ReadKkit.cpp.o CMakeFiles/kinetics.dir/WriteKkit.cpp.o CMakeFiles/kinetics.dir/ReadCspace.cpp.o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o CMakeFiles/kinetics.dir/testKinetics.cpp.o /usr/bin/ranlib libkinetics.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 93%] Built target kinetics [ 93%] Linking CXX static library libsynapse.a cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse && /usr/bin/cmake -P CMakeFiles/synapse.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/synapse && /usr/bin/cmake -E cmake_link_script CMakeFiles/synapse.dir/link.txt --verbose=1 /usr/bin/ar qc libsynapse.a CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o CMakeFiles/synapse.dir/RollingMatrix.cpp.o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o CMakeFiles/synapse.dir/STDPSynapse.cpp.o CMakeFiles/synapse.dir/SeqSynHandler.cpp.o CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o CMakeFiles/synapse.dir/Synapse.cpp.o CMakeFiles/synapse.dir/testSynapse.cpp.o /usr/bin/ranlib libsynapse.a gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 93%] Built target synapse /usr/bin/gmake -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/depend /usr/bin/gmake -f pymoose/CMakeFiles/_moose.dir/build.make pymoose/CMakeFiles/_moose.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/CMakeFiles/libmoose.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/pymoose /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/pymoose/CMakeFiles/_moose.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/libmoose.dir/build.make CMakeFiles/libmoose.dir/build /usr/bin/gmake -f pymoose/CMakeFiles/_moose.dir/build.make pymoose/CMakeFiles/_moose.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 94%] Building CXX object CMakeFiles/libmoose.dir/basecode/main.cpp.o [ 94%] Building CXX object pymoose/CMakeFiles/_moose.dir/moosemodule.cpp.o [ 94%] Building CXX object pymoose/CMakeFiles/_moose.dir/vec.cpp.o [ 95%] Building CXX object pymoose/CMakeFiles/_moose.dir/mfield.cpp.o [ 95%] Building CXX object pymoose/CMakeFiles/_moose.dir/pymooseinit.cpp.o [ 95%] Building CXX object pymoose/CMakeFiles/_moose.dir/melement.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/pymoose && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -D_moose_EXPORTS -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../msg -I/usr/lib64/python3.13/site-packages/numpy/_core/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -D_moose_EXPORTS -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../msg -I/usr/lib64/python3.13/site-packages/numpy/_core/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -I/usr/include/python3.13 -I/usr/include/python3.13 -MD -MT pymoose/CMakeFiles/_moose.dir/vec.cpp.o -MF CMakeFiles/_moose.dir/vec.cpp.o.d -o CMakeFiles/_moose.dir/vec.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/vec.cpp cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/pymoose && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -D_moose_EXPORTS -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../msg -I/usr/lib64/python3.13/site-packages/numpy/_core/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -I/usr/include/python3.13 -I/usr/include/python3.13 -MD -MT pymoose/CMakeFiles/_moose.dir/mfield.cpp.o -MF CMakeFiles/_moose.dir/mfield.cpp.o.d -o CMakeFiles/_moose.dir/mfield.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -I/usr/include/python3.13 -I/usr/include/python3.13 -MD -MT pymoose/CMakeFiles/_moose.dir/pymooseinit.cpp.o -MF CMakeFiles/_moose.dir/pymooseinit.cpp.o.d -o CMakeFiles/_moose.dir/pymooseinit.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/pymooseinit.cpp cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/pymoose && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY 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-Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -I/usr/include/python3.13 -I/usr/include/python3.13 -MD -MT pymoose/CMakeFiles/_moose.dir/melement.cpp.o -MF CMakeFiles/_moose.dir/melement.cpp.o.d -o CMakeFiles/_moose.dir/melement.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/melement.cpp [ 96%] Building CXX object pymoose/CMakeFiles/_moose.dir/test_moosemodule.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/pymoose && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -D_moose_EXPORTS -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../msg -I/usr/lib64/python3.13/site-packages/numpy/_core/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -I/usr/include/python3.13 -I/usr/include/python3.13 -MD -MT pymoose/CMakeFiles/_moose.dir/test_moosemodule.cpp.o -MF CMakeFiles/_moose.dir/test_moosemodule.cpp.o.d -o CMakeFiles/_moose.dir/test_moosemodule.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/test_moosemodule.cpp [ 96%] Linking CXX shared library libmoose.so /usr/bin/cmake -E cmake_link_script CMakeFiles/libmoose.dir/link.txt --verbose=1 [ 96%] Building CXX object pymoose/CMakeFiles/_moose.dir/PyRun.cpp.o cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/pymoose && /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -D_moose_EXPORTS -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../basecode -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../msg -I/usr/lib64/python3.13/site-packages/numpy/_core/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -I/usr/include/python3.13 -I/usr/include/python3.13 -MD -MT pymoose/CMakeFiles/_moose.dir/PyRun.cpp.o -MF CMakeFiles/_moose.dir/PyRun.cpp.o.d -o CMakeFiles/_moose.dir/PyRun.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/PyRun.cpp In file included from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/PyRun.cpp:50: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/PyRun.h: In function ‘std::string get_program_name()’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/PyRun.h:58:41: warning: ‘wchar_t* Py_GetProgramName()’ is deprecated [-Wdeprecated-declarations] 58 | wchar_t * progname = Py_GetProgramName(); | ~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/python3.13/Python.h:123, from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/PyRun.cpp:48: /usr/include/python3.13/pylifecycle.h:38:43: note: declared here 38 | Py_DEPRECATED(3.13) PyAPI_FUNC(wchar_t *) Py_GetProgramName(void); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/x86_64-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp:42: In member function ‘std::__new_allocator::construct(PyGetSetDef*, PyGetSetDef const&)void’, inlined from ‘std::allocator_traits >::construct(std::allocator&, PyGetSetDef*, PyGetSetDef const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(PyGetSetDef const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘defineLookupFinfos(Cinfo const*)’ at /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp:2821:46: /usr/include/c++/14/bits/new_allocator.h:191:11: warning: ‘getset’ may be used uninitialized [-Wmaybe-uninitialized] 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp: In function ‘defineLookupFinfos(Cinfo const*)’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp:2820:21: note: ‘getset’ declared here 2820 | PyGetSetDef getset; | ^~~~~~ In file included from /usr/include/c++/14/vector:66, from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/../utility/print_function.hpp:29, from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp:60: In member function ‘std::vector >::push_back(PyGetSetDef const&)’, inlined from ‘defineLookupFinfos(Cinfo const*)’ at /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp:2821:46: /usr/include/c++/14/bits/stl_vector.h:1294:28: warning: ‘getset’ may be used uninitialized [-Wmaybe-uninitialized] 1294 | _M_realloc_append(__x); | ~~~~~~~~~~~~~~~~~^~~~~ In file included from /usr/include/c++/14/vector:72: /usr/include/c++/14/bits/vector.tcc: In function ‘defineLookupFinfos(Cinfo const*)’: /usr/include/c++/14/bits/vector.tcc:581:7: note: by argument 2 of type ‘const struct PyGetSetDef &’ to ‘std::vector >::_M_realloc_append(PyGetSetDef const&)void’ declared here 581 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp:2820:21: note: ‘getset’ declared here 2820 | PyGetSetDef getset; | ^~~~~~ In member function ‘std::__new_allocator::construct(PyGetSetDef*, PyGetSetDef const&)void’, inlined from ‘std::allocator_traits >::construct(std::allocator&, PyGetSetDef*, PyGetSetDef const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(PyGetSetDef const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘defineElementFinfos(Cinfo const*)’ at /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp:2897:46: /usr/include/c++/14/bits/new_allocator.h:191:11: warning: ‘getset’ may be used uninitialized [-Wmaybe-uninitialized] 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp: In function ‘defineElementFinfos(Cinfo const*)’: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp:2896:21: note: ‘getset’ declared here 2896 | PyGetSetDef getset; | ^~~~~~ In member function ‘std::vector >::push_back(PyGetSetDef const&)’, inlined from ‘defineElementFinfos(Cinfo const*)’ at /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp:2897:46: /usr/include/c++/14/bits/stl_vector.h:1294:28: warning: ‘getset’ may be used uninitialized [-Wmaybe-uninitialized] 1294 | _M_realloc_append(__x); | ~~~~~~~~~~~~~~~~~^~~~~ /usr/include/c++/14/bits/vector.tcc: In function ‘defineElementFinfos(Cinfo const*)’: /usr/include/c++/14/bits/vector.tcc:581:7: note: by argument 2 of type ‘const struct PyGetSetDef &’ to ‘std::vector >::_M_realloc_append(PyGetSetDef const&)void’ declared here 581 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/pymoose/moosemodule.cpp:2896:21: note: ‘getset’ declared here 2896 | PyGetSetDef getset; | ^~~~~~ /usr/bin/ld: /tmp/ccy6BewM.ltrans17.ltrans.o: in function `testCreateStringDataset()': /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/builtins/testNSDF.cpp:76:(.text+0x80cc): warning: the use of `tmpnam' is dangerous, better use `mkstemp' /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG 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Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 96%] Built target libmoose /usr/bin/gmake -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/CMakeFiles/moose.bin.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 96%] Building CXX object CMakeFiles/moose.bin.dir/basecode/main.cpp.o /usr/bin/g++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.5\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/msg -I/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -MD -MT CMakeFiles/moose.bin.dir/basecode/main.cpp.o -MF CMakeFiles/moose.bin.dir/basecode/main.cpp.o.d -o CMakeFiles/moose.bin.dir/basecode/main.cpp.o -c /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/basecode/main.cpp [ 97%] Linking CXX executable moose.bin /usr/bin/cmake -E cmake_link_script CMakeFiles/moose.bin.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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../python/moose/_moose.so CMakeFiles/_moose.dir/moosemodule.cpp.o CMakeFiles/_moose.dir/vec.cpp.o CMakeFiles/_moose.dir/mfield.cpp.o CMakeFiles/_moose.dir/pymooseinit.cpp.o CMakeFiles/_moose.dir/melement.cpp.o CMakeFiles/_moose.dir/test_moosemodule.cpp.o CMakeFiles/_moose.dir/PyRun.cpp.o -L/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build -Wl,--whole-archive ../external/muparser/libmuparser.a ../builtins/libmoose_builtins.a ../msg/libmsg.a ../benchmarks/libbenchmarks.a ../shell/libshell.a ../randnum/librandnum.a ../scheduling/libscheduling.a ../mpi/libmoose_mpi.a ../biophysics/libbiophysics.a ../utility/libutility.a ../kinetics/libkinetics.a ../synapse/libsynapse.a ../intfire/libintfire.a ../hsolve/libhsolve.a ../mesh/libmesh.a ../signeur/libsigneur.a ../diffusion/libdiffusion.a ../ksolve/libksolve.a ../device/libdevice.a ../basecode/libbasecode.a -Wl,--no-whole-archive -lhdf5_cpp -lhdf5 -lhdf5_hl_cpp -lhdf5_hl -lgsl -lgslcblas cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/pymoose && /usr/bin/cmake -E cmake_echo_color --cyan "MOOSE python extention is successfully built. Now " " Run 'sudo make install' to install it. " " " "NOTE: Run 'pip uninstall moose' to uninstall moose." MOOSE python extention is successfully built. Now Run 'sudo make install' to install it. NOTE: Run 'pip uninstall moose' to uninstall moose. gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 98%] Built target _moose /usr/bin/gmake -f CMakeFiles/copy_pymoose.dir/build.make CMakeFiles/copy_pymoose.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/CMakeFiles/copy_pymoose.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/copy_pymoose.dir/build.make CMakeFiles/copy_pymoose.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 99%] Copying required python files from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/python to to build directory /usr/bin/cmake -E copy_directory /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/python /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [ 99%] Built target copy_pymoose /usr/bin/gmake -f CMakeFiles/bdist.dir/build.make CMakeFiles/bdist.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/CMakeFiles/bdist.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/bdist.dir/build.make CMakeFiles/bdist.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [100%] bdist is saved to /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/bdist cd /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python && /usr/bin/python3 setup.cmake.py bdist_dumb -p CMAKE -d /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/bdist /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.13/site-packages/moose/utils.py:98: SyntaxWarning: "is" with 'int' literal. Did you mean "=="? /usr/lib/python3.13/site-packages/moose/genesis/writeKkit.py:340: SyntaxWarning: invalid escape sequence '\[' /usr/lib/python3.13/site-packages/moose/genesis/writeKkit.py:387: SyntaxWarning: invalid escape sequence '\[' /usr/lib/python3.13/site-packages/moose/genesis/writeKkit.py:419: SyntaxWarning: invalid escape sequence '\[' /usr/lib/python3.13/site-packages/moose/genesis/writeKkit.py:624: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.13/site-packages/moose/neuroml/MorphML.py:584: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib/python3.13/site-packages/moose/neuroml/MorphML.py:594: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib/python3.13/site-packages/moose/chemUtil/chemConnectUtil.py:12: SyntaxWarning: invalid escape sequence '\ ' Got 3.1.5 from VERSION file [INFO] Suffix for python SO: .so Unarchiving bdist file /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/bdist/pymoose-3.1.5.CMAKE.tar.gz to /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/pymoose_bdist_install /usr/bin/cmake -E chdir /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/pymoose_bdist_install tar xvf /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/bdist/pymoose-3.1.5.CMAKE.tar.gz ./ ./usr/ ./usr/lib/ ./usr/lib/python3.13/ ./usr/lib/python3.13/site-packages/ ./usr/lib/python3.13/site-packages/moose/ ./usr/lib/python3.13/site-packages/moose/SBML/ ./usr/lib/python3.13/site-packages/moose/SBML/__init__.py ./usr/lib/python3.13/site-packages/moose/SBML/__pycache__/ 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./usr/lib/python3.13/site-packages/pymoose-3.1.5-py3.13.egg-info/ ./usr/lib/python3.13/site-packages/pymoose-3.1.5-py3.13.egg-info/PKG-INFO ./usr/lib/python3.13/site-packages/pymoose-3.1.5-py3.13.egg-info/SOURCES.txt ./usr/lib/python3.13/site-packages/pymoose-3.1.5-py3.13.egg-info/dependency_links.txt ./usr/lib/python3.13/site-packages/pymoose-3.1.5-py3.13.egg-info/requires.txt ./usr/lib/python3.13/site-packages/pymoose-3.1.5-py3.13.egg-info/top_level.txt ./usr/lib/python3.13/site-packages/rdesigneur/ ./usr/lib/python3.13/site-packages/rdesigneur/__init__.py ./usr/lib/python3.13/site-packages/rdesigneur/__pycache__/ ./usr/lib/python3.13/site-packages/rdesigneur/__pycache__/__init__.cpython-313.pyc ./usr/lib/python3.13/site-packages/rdesigneur/__pycache__/rdesigneur.cpython-313.pyc ./usr/lib/python3.13/site-packages/rdesigneur/__pycache__/rdesigneurProtos.cpython-313.pyc ./usr/lib/python3.13/site-packages/rdesigneur/__pycache__/rmoogli.cpython-313.pyc ./usr/lib/python3.13/site-packages/rdesigneur/rdesigneur.py ./usr/lib/python3.13/site-packages/rdesigneur/rdesigneurProtos.py ./usr/lib/python3.13/site-packages/rdesigneur/rmoogli.py gmake[2]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' [100%] Built target bdist gmake[1]: Leaving directory '/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/CMakeFiles 0 + pushd redhat-linux-build/python ~/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python ~/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.cmake.py build '--executable=/usr/bin/python3 -sP' Got 3.1.5 from VERSION file [INFO] Suffix for python SO: .so + popd ~/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1Ph4Th + umask 022 + cd /builddir/build/BUILD/moose-3.1.5-build + '[' /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT ++ dirname /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT + mkdir -p /builddir/build/BUILD/moose-3.1.5-build + mkdir /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd moose-core-3.1.5 + install -vD redhat-linux-build/moose.bin /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/bin/moose install: creating directory '/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr' install: creating directory '/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/bin' 'redhat-linux-build/moose.bin' -> '/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/bin/moose' + install -vDt /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/ redhat-linux-build/libmoose.so install: creating directory '/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64' 'redhat-linux-build/libmoose.so' -> '/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/libmoose.so' + pushd redhat-linux-build/python ~/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python ~/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.cmake.py install -O1 --skip-build --root /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT --prefix /usr --install-lib=/usr/lib64/python3.13/site-packages /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:340: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:387: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:419: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:624: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/moose/neuroml/MorphML.py:584: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib64/python3.13/site-packages/moose/neuroml/MorphML.py:594: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib64/python3.13/site-packages/moose/chemUtil/chemConnectUtil.py:12: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/moose/utils.py:98: SyntaxWarning: "is" with 'int' literal. Did you mean "=="? /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:340: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:387: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:419: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:624: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/moose/neuroml/MorphML.py:584: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib64/python3.13/site-packages/moose/neuroml/MorphML.py:594: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib64/python3.13/site-packages/moose/chemUtil/chemConnectUtil.py:12: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/moose/utils.py:98: SyntaxWarning: "is" with 'int' literal. Did you mean "=="? Got 3.1.5 from VERSION file [INFO] Suffix for python SO: .so + rm -rfv /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/bin/__pycache__ + chmod +x /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/_moose.so + popd ~/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 + /usr/bin/find-debuginfo -j6 --strict-build-id -m -i --build-id-seed 3.1.5-24.fc42 --unique-debug-suffix -3.1.5-24.fc42.x86_64 --unique-debug-src-base moose-3.1.5-24.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 find-debuginfo: starting Extracting debug info from 3 files DWARF-compressing 3 files sepdebugcrcfix: Updated 3 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/moose-3.1.5-24.fc42.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j6 Bytecompiling .py files below /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13 using python3.13 /usr/lib64/python3.13/site-packages/moose/chemUtil/chemConnectUtil.py:12: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/moose/chemUtil/chemConnectUtil.py:12: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:340: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:387: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:419: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:624: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/moose/neuroml/MorphML.py:584: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib64/python3.13/site-packages/moose/neuroml/MorphML.py:594: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:340: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:387: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:419: SyntaxWarning: invalid escape sequence '\[' /usr/lib64/python3.13/site-packages/moose/genesis/writeKkit.py:624: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/moose/neuroml/MorphML.py:584: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib64/python3.13/site-packages/moose/neuroml/MorphML.py:594: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib64/python3.13/site-packages/moose/utils.py:98: SyntaxWarning: "is" with 'int' literal. Did you mean "=="? /usr/lib64/python3.13/site-packages/moose/utils.py:98: SyntaxWarning: "is" with 'int' literal. Did you mean "=="? Bytecompiling .py files below /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j6 /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/rdesigneur/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/SBML/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/rdesigneur/__pycache__/rmoogli.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/SBML/__pycache__/validation.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/rdesigneur/__pycache__/rdesigneurProtos.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/genesis/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/rdesigneur/__pycache__/rdesigneurProtos.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/SBML/__pycache__/writeSBML.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/SBML/__pycache__/readSBML.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml/__pycache__/utils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/genesis/__pycache__/writeKkit.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml/__pycache__/MorphML.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/rdesigneur/__pycache__/rdesigneur.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml/__pycache__/NetworkML.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml/__pycache__/NeuroML.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/converter.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/test_hhfit.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/units.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml/__pycache__/ChannelML.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/hhfit.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/test_reader.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/test_converter.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/chemUtil/__pycache__/add_Delete_ChemicalSolver.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/rdesigneur/__pycache__/rdesigneur.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/chemUtil/__pycache__/chemConnectUtil.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/reader.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/chemUtil/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/moose_config.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/moose_constants.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/chemUtil/__pycache__/graphUtils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/hdfutil.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/reader.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/constants.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/methods_utils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/merge.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/moose_test.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/graph_utils.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/graph_utils.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/moose.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/moose.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/graphutil.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/optimizer_interface.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/plot_utils.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/plot_utils.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/optimizer_interface.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/print_utils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/alternate.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/recording.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/__pycache__/utils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/generated_neuromlsub.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages/moose/neuroml2/__pycache__/generated_neuroml.cpython-313.pyc: rewriting with normalized contents Scanned 80 directories and 610 files, processed 54 inodes, 54 modified (14 replaced + 40 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/moose-3.1.5-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.l0SdZY + umask 022 + cd /builddir/build/BUILD/moose-3.1.5-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd moose-core-3.1.5 + checksec --file=/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/bin/moose RELRO STACK CANARY NX PIE RPATH RUNPATH Symbols FORTIFY Fortified Fortifiable FILE Full RELRO Canary found NX enabled PIE enabled No RPATH No RUNPATH No Symbols No 0 1 /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/bin/moose + pushd redhat-linux-build ~/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build ~/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 + ctest --output-on-failure -V -E test_streamer UpdateCTestConfiguration from :/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/DartConfiguration.tcl Test project /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_function 1: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_function.py" 1: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 1: Environment variables: 1: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 1: Test timeout computed to be: 1500 1: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/chemUtil/chemConnectUtil.py:12: SyntaxWarning: invalid escape sequence '\ ' 1: ''' Setup compartment and its members pool,reaction,enz cplx under self.meshEntry dictionaries \ 1: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/genesis/writeKkit.py:340: SyntaxWarning: invalid escape sequence '\[' 1: splitpath = re.sub("\[[0-9]+\]", "", splitpath) 1: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/genesis/writeKkit.py:387: SyntaxWarning: invalid escape sequence '\[' 1: tabPath = re.sub("\[[0-9]+\]", "", tabPath) 1: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/genesis/writeKkit.py:419: SyntaxWarning: invalid escape sequence '\[' 1: tabPath = re.sub("\[[0-9]+\]", "", tabPath) 1: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/genesis/writeKkit.py:624: SyntaxWarning: invalid escape sequence '\ ' 1: f.write("call /kinetics/"+ trimPath(item)+"/notes LOAD \ \n\""+moose.Annotator(info).getField('notes')+"\"\n") 1: 0 0.0 1: 1 1.1 1: 2 2.211 1: 3 3.322 1: 4 4.433 1: 5 5.5440000000000005 1/13 Test #1: test_function .................... Passed 0.40 sec test 2 Start 2: test_kkit 2: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_kkit.py" 2: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 2: Environment variables: 2: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 2: Test timeout computed to be: 1500 2: Script dir /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 2/13 Test #2: test_kkit ........................ Passed 0.35 sec test 3 Start 3: test_ksolve 3: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_ksolve.py" 3: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 3: Environment variables: 3: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 3: Test timeout computed to be: 1500 3: Using moose from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/__init__.py 3: [INFO] Using method = rk5 3: [INFO] Time taken 0.0016605854034423828 3: Test passed 3/13 Test #3: test_ksolve ...................... Passed 0.35 sec test 4 Start 4: test_moose_paths 4: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_moose_paths.py" 4: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 4: Environment variables: 4: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 4: Test timeout computed to be: 1500 4/13 Test #4: test_moose_paths ................. Passed 0.36 sec test 5 Start 5: test_neuroml 5: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_neuroml.py" 5: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 5: Environment variables: 5: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 5: Test timeout computed to be: 1500 5: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/utils.py:98: SyntaxWarning: "is" with 'int' literal. Did you mean "=="? 5: if len(token) is 0: 5: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/neuroml/MorphML.py:584: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? 5: elif mechanismname is 'synapse': # synapse being added to the compartment 5: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/neuroml/MorphML.py:594: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? 5: elif mechanismname is 'spikegen': # spikegen being added to the compartment 5: moose.nml.neuroml: INFO Loading neuroml file /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/neuroml/cells_channels/CA1soma.morph.xml 5: moose.nml.neuroml: INFO Loading neuroml file /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/neuroml/cells_channels/CA1soma.morph.xml 5: moose.nml.neuroml: INFO Using default temperature of 32.0 degree Celsius 5: moose.nml.neuroml: INFO Using default temperature of 32.0 degree Celsius 5: moose.nml.neuroml: INFO Loading neuroml file /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/neuroml/CA1soma.net.xml 5: moose.nml.neuroml: INFO Loading neuroml file /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/neuroml/CA1soma.net.xml 5: moose.nml.neuroml: INFO Using default temperature of 32.0 degree Celsius 5: moose.nml.neuroml: INFO Using default temperature of 32.0 degree Celsius 5: moose.nml.networkml: INFO Creating population CA1group of cell type CA1soma 5: moose.nml.networkml: INFO Creating population CA1group of cell type CA1soma 5: moose.nml.networkml: INFO Creating input under /elec 5: moose.nml.networkml: INFO Creating input under /elec 5: For injected current 4e-13, no of spikes in 1.0 second: 10 5: For injected current 8e-13, no of spikes in 1.0 second: 20 5: For injected current 1.4e-12, no of spikes in 1.0 second: 29 5: For injected current 1.8e-12, no of spikes in 1.0 second: 34 5/13 Test #5: test_neuroml ..................... Passed 3.15 sec test 6 Start 6: test_nsdf 6: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_nsdf.py" 6: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 6: Environment variables: 6: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 6: Test timeout computed to be: 1500 6: using moose from: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/__init__.py 6: event input /model[0]/writer[0].eventInput 0 6: 6: /model[0]/writer[0]/eventInput[0] 6: 2024-12-20T15:01:53.709617 6: 2024-12-20T15:01:53.852174 6/13 Test #6: test_nsdf ........................ Passed 0.69 sec test 7 Start 7: test_pymoose 7: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_pymoose.py" 7: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 7: Environment variables: 7: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 7: Test timeout computed to be: 1500 7: ..............................0: Error: SetGet::strGet: Field Vm not found on Element z 7: 0: Error: SetGet::strGet: Field Vm not found on Element z 7: 0: Error: SetGet::strGet: Field Vm not found on Element z 7: .. 7: ---------------------------------------------------------------------- 7: Ran 32 tests in 0.007s 7: 7: OK 7: PyMOOSE Regression Tests: 7: Testing connect ... OK 7: Testing delete ... neutral175913724509112546772302459539416492978 neutral175913724509112546772302459539416492978/b 7: /neutral175913724509112546772302459539416492978[0] /neutral175913724509112546772302459539416492978[0]/b[0] 7: 3 3 7: neutral4837847976075155797933252427573846564 neutral4837847976075155797933252427573846564/b 7: /neutral4837847976075155797933252427573846564[0] /neutral4837847976075155797933252427573846564[0]/b[0] 7: 3 3 7: neutral5377604408953822523085218215347642308 neutral5377604408953822523085218215347642308/b 7: /neutral5377604408953822523085218215347642308[0] /neutral5377604408953822523085218215347642308[0]/b[0] 7: 3 3 7: neutral218480724857988308316305618323064776590 neutral218480724857988308316305618323064776590/b 7: /neutral218480724857988308316305618323064776590[0] /neutral218480724857988308316305618323064776590[0]/b[0] 7: 3 3 7: neutral75988201513239392554488453914296610664 neutral75988201513239392554488453914296610664/b 7: /neutral75988201513239392554488453914296610664[0] /neutral75988201513239392554488453914296610664[0]/b[0] 7: 3 3 7: neutral184087885365042387428874544175607617500 neutral184087885365042387428874544175607617500/b 7: /neutral184087885365042387428874544175607617500[0] /neutral184087885365042387428874544175607617500[0]/b[0] 7: 3 3 7: neutral203748732734655318717971326620807085129 neutral203748732734655318717971326620807085129/b 7: /neutral203748732734655318717971326620807085129[0] /neutral203748732734655318717971326620807085129[0]/b[0] 7: 3 3 7: neutral212398500625570810682310952066037004245 neutral212398500625570810682310952066037004245/b 7: /neutral212398500625570810682310952066037004245[0] /neutral212398500625570810682310952066037004245[0]/b[0] 7: 3 3 7: neutral96733231479708687996718756704277312977 neutral96733231479708687996718756704277312977/b 7: /neutral96733231479708687996718756704277312977[0] /neutral96733231479708687996718756704277312977[0]/b[0] 7: 3 3 7: neutral20152738792747823560641704751322511489 neutral20152738792747823560641704751322511489/b 7: /neutral20152738792747823560641704751322511489[0] /neutral20152738792747823560641704751322511489[0]/b[0] 7: 3 3 7: neutral40985792272746109877977664551521576367 neutral40985792272746109877977664551521576367/b 7: /neutral40985792272746109877977664551521576367[0] /neutral40985792272746109877977664551521576367[0]/b[0] 7: 3 3 7: neutral327681137872659093357650677015487826998 neutral327681137872659093357650677015487826998/b 7: /neutral327681137872659093357650677015487826998[0] /neutral327681137872659093357650677015487826998[0]/b[0] 7: 3 3 7: neutral180667308197686919723892141433600399896 neutral180667308197686919723892141433600399896/b 7: /neutral180667308197686919723892141433600399896[0] /neutral180667308197686919723892141433600399896[0]/b[0] 7: 3 3 7: neutral216032825641554245229497108991510890655 neutral216032825641554245229497108991510890655/b 7: /neutral216032825641554245229497108991510890655[0] /neutral216032825641554245229497108991510890655[0]/b[0] 7: 3 3 7: neutral160891277474228241506592690239490454536 neutral160891277474228241506592690239490454536/b 7: /neutral160891277474228241506592690239490454536[0] /neutral160891277474228241506592690239490454536[0]/b[0] 7: 3 3 7/13 Test #7: test_pymoose ..................... Passed 0.37 sec test 8 Start 8: test_pyrun 8: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_pyrun.py" 8: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 8: Environment variables: 8: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 8: Test timeout computed to be: 1500 8/13 Test #8: test_pyrun ....................... Passed 0.34 sec test 9 Start 9: test_sbml 9: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_sbml.py" 9: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 9: Environment variables: 9: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 9: Test timeout computed to be: 1500 9: line 3: (99507 [Warning]) In situations where a mathematical expression refers to extent, the units of extent should be consistent with the global extent units of the model. In models where the 'extentUnits' attribute has not been declared, libSBML does not yet have the functionality to verify accurately the consistency of the units in such expressions. 9: 9: line 29: (99508 [Warning]) In situations where a mathematical expression refers to a compartment, species or parameter, it is necessary to know the units of the object to establish unit consistency. In models where the units of an object have not been declared, libSBML does not yet have the functionality to accurately verify the consistency of the units in mathematical expressions referring to that object. 9: The units of the 'k1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate. 9: 9: line 29: (20702 [Warning]) If the attribute 'units' on a given Parameter object has not been set, then the unit of measurement associated with that parameter's value is undefined. 9: Reference: L3V1 Section 4.7.3 9: The with id 'k1' does not have a 'units' attribute. 9: 9: line 39: (99505 [Warning]) In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. 9: The units of the expression 'compartment * k1 * S1' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate. 9: 9: line 29: (80701 [Warning]) As a principle of best modeling practice, the units of a should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models. 9: The with the id 'k1' does not have a 'units' attribute. 9: 9: 9: File: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/./chem_models/00001-sbml-l3v1.xml (Level 3, version 1) 9: model: > 9: functionDefinitions: 0 9: unitDefinitions: 3 9: compartmentTypes: 0 9: specieTypes: 0 9: compartments: 1 9: species: 2 9: parameters: 1 9: initialAssignments: 0 9: rules: 0 9: constraints: 0 9: reactions: 1 9: events: 0 9: 9: 9: Compartment size is 1 9: 9: 9: 9: 9: 9: 9: 9/13 Test #9: test_sbml ........................ Passed 0.36 sec test 10 Start 10: test_snippets 10: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_snippets.py" 10: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 10: Environment variables: 10: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 10: Test timeout computed to be: 1500 10: Testing snippets in /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/../../Demos/snippets 10: [INFO] Disabling all pylab/matplotlib show() functions 10/13 Test #10: test_snippets .................... Passed 0.05 sec test 11 Start 11: test_synchan 11: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_synchan.py" 11: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 11: Environment variables: 11: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 11: Test timeout computed to be: 1500 11: Using moose from /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/__init__.py 11: ('Synapses:', 1, 'w=', 1.0) 11/13 Test #11: test_synchan ..................... Passed 0.35 sec test 12 Start 12: test_table_streaming_support 12: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_table_streaming_support.py" 12: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 12: Environment variables: 12: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 12: Test timeout computed to be: 1500 12: @ Fri Dec 20 15:01:55 2024: 10% of total 1000 seconds is over. 12: @ Fri Dec 20 15:01:55 2024: 20% of total 1000 seconds is over. 12: @ Fri Dec 20 15:01:55 2024: 30% of total 1000 seconds is over. 12: @ Fri Dec 20 15:01:55 2024: 40% of total 1000 seconds is over. 12: @ Fri Dec 20 15:01:55 2024: 50% of total 1000 seconds is over. 12: @ Fri Dec 20 15:01:55 2024: 60% of total 1000 seconds is over. 12: @ Fri Dec 20 15:01:55 2024: 70% of total 1000 seconds is over. 12: @ Fri Dec 20 15:01:55 2024: 80% of total 1000 seconds is over. 12: @ Fri Dec 20 15:01:55 2024: 90% of total 1000 seconds is over. 12: @ Fri Dec 20 15:01:55 2024: 100% of total 1000 seconds is over. 12: [INFO] Using moose form /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python/moose/__init__.py 12: outfile : _tables/compt/a/tabA.npy useStreamer: True Path: /compt[0]/a[0]/tabA[0] 12: outfile : table2.npy useStreamer: True Path: /compt[0]/b[0]/tabB[0] 12: outfile : tablec.csv useStreamer: True Path: /compt[0]/c[0]/tabC[0] 12: Starting moose for 1000 12: MOOSE is done 12: [(3.27854e-318, 1. ) (1.00000e+000, 0.92331735) 12: (2.00000e+000, 0.84777147) ... (9.98000e+002, 0.31806056) 12: (9.99000e+002, 0.31806056) (1.00000e+003, 0.31806056)] 12: [(3.27854e-318, 2. ) (1.00000e+000, 2.07704612) 12: (2.00000e+000, 2.15294716) ... (9.98000e+002, 2.68506706) 12: (9.99000e+002, 2.68506706) (1.00000e+003, 2.68506706)] 12: [[0.00000000e+00 5.00000000e-01] 12: [1.00000000e+00 5.76988371e-01] 12: [2.00000000e+00 6.52832515e-01] 12: ... 12: [9.98000000e+02 1.18455350e+00] 12: [9.99000000e+02 1.18455350e+00] 12: [1.00000000e+03 1.18455350e+00]] 12: [3.27854e-318 1.00000e+000 2.00000e+000 ... 9.98000e+002 9.99000e+002 12: 1.00000e+003] 12: [3.27854e-318 1.00000e+000 2.00000e+000 ... 9.98000e+002 9.99000e+002 12: 1.00000e+003] 12: [INFO] All tests passed 12/13 Test #12: test_table_streaming_support ..... Passed 0.38 sec test 13 Start 13: test_vec 13: Test command: /usr/bin/python3 "/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python/test_vec.py" 13: Working Directory: /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/tests/python 13: Environment variables: 13: PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/redhat-linux-build/python 13: Test timeout computed to be: 1500 13/13 Test #13: test_vec ......................... Passed 0.34 sec The following tests passed: test_function test_kkit test_ksolve test_moose_paths test_neuroml test_nsdf test_pymoose test_pyrun test_sbml test_snippets test_synchan test_table_streaming_support test_vec 100% tests passed, 0 tests failed out of 13 Total Test time (real) = 7.48 sec + popd ~/build/BUILD/moose-3.1.5-build/moose-core-3.1.5 + PYTHONPATH=/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/lib64/python3.13/site-packages + /usr/bin/python3 -c 'import moose; element = moose.Neutral("/yyy"); print(element.path)' /yyy[0] + RPM_EC=0 ++ jobs -p + exit 0 Processing files: moose-3.1.5-24.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.rPloBJ + umask 022 + cd /builddir/build/BUILD/moose-3.1.5-build + cd moose-core-3.1.5 + DOCDIR=/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/doc/moose + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/doc/moose + cp -pr /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/README.md /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/doc/moose + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Z0wQbb + umask 022 + cd /builddir/build/BUILD/moose-3.1.5-build + cd moose-core-3.1.5 + LICENSEDIR=/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/licenses/moose + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/licenses/moose + cp -pr /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/LICENSE /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/licenses/moose + RPM_EC=0 ++ jobs -p + exit 0 Provides: libmoose.so()(64bit) moose = 3.1.5-24.fc42 moose(x86-64) = 3.1.5-24.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhdf5.so.310()(64bit) libhdf5_hl.so.310()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmoose.so()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: python3-moose-3.1.5-24.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.E8yNsQ + umask 022 + cd /builddir/build/BUILD/moose-3.1.5-build + cd moose-core-3.1.5 + DOCDIR=/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/doc/moose + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/doc/moose + cp -pr /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/README.md /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/doc/moose + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.z4mf8M + umask 022 + cd /builddir/build/BUILD/moose-3.1.5-build + cd moose-core-3.1.5 + LICENSEDIR=/builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/licenses/moose + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/licenses/moose + cp -pr /builddir/build/BUILD/moose-3.1.5-build/moose-core-3.1.5/LICENSE /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT/usr/share/licenses/moose + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-moose = 3.1.5-24.fc42 python3-moose = 3.1.5-24.fc42 python3-moose(x86-64) = 3.1.5-24.fc42 python3.13-moose = 3.1.5-24.fc42 python3.13dist(pymoose) = 3.1.5 python3dist(pymoose) = 3.1.5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhdf5.so.310()(64bit) libhdf5_hl.so.310()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) rtld(GNU_HASH) Processing files: moose-debugsource-3.1.5-24.fc42.x86_64 Provides: moose-debugsource = 3.1.5-24.fc42 moose-debugsource(x86-64) = 3.1.5-24.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: moose-debuginfo-3.1.5-24.fc42.x86_64 Provides: debuginfo(build-id) = 9df0c3dbda4a34cc30f1eb8474dda9e4b07695a8 debuginfo(build-id) = ca07636bccd1144303d68d722cd310e3f14336af libmoose.so-3.1.5-24.fc42.x86_64.debug()(64bit) moose-debuginfo = 3.1.5-24.fc42 moose-debuginfo(x86-64) = 3.1.5-24.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: moose-debugsource(x86-64) = 3.1.5-24.fc42 Processing files: python3-moose-debuginfo-3.1.5-24.fc42.x86_64 Provides: debuginfo(build-id) = 9368b5e0391bd610cc62eb704bd4c8ce666594bb python-moose-debuginfo = 3.1.5-24.fc42 python3-moose-debuginfo = 3.1.5-24.fc42 python3-moose-debuginfo(x86-64) = 3.1.5-24.fc42 python3.13-moose-debuginfo = 3.1.5-24.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: moose-debugsource(x86-64) = 3.1.5-24.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/moose-3.1.5-build/BUILDROOT Wrote: /builddir/build/RPMS/moose-3.1.5-24.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/moose-debugsource-3.1.5-24.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-moose-3.1.5-24.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-moose-debuginfo-3.1.5-24.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/moose-debuginfo-3.1.5-24.fc42.x86_64.rpm Child return code was: 0