Mock Version: 6.1
Mock Version: 6.1
Mock Version: 6.1
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'], chrootPath='/var/lib/mock/f42-build-58354888-6564693/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff83d4d370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '851f49582cc04ced9aead0cd4c1811a5', '-D', '/var/lib/mock/f42-build-58354888-6564693/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1737158400
Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-5.fc42.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'], chrootPath='/var/lib/mock/f42-build-58354888-6564693/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff83d4d370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9d9bfb5bba1d4e5e9d62fc3e6a3e8ebd', '-D', '/var/lib/mock/f42-build-58354888-6564693/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1737158400
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.j4FSEm
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.fd7Lkh
+ umask 022
+ cd /builddir/build/BUILD/python-bioframe-0.7.2-build
+ cd /builddir/build/BUILD/python-bioframe-0.7.2-build
+ rm -rf bioframe-0.7.2
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bioframe-0.7.2.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bioframe-0.7.2
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ sed -i '/"ruff"/ d' pyproject.toml
+ sed -r -i 's/(numpy.*), ?<2/\1/' pyproject.toml
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.P8y2ne
+ umask 022
+ cd /builddir/build/BUILD/python-bioframe-0.7.2-build
+ cd bioframe-0.7.2
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-buildrequires -x dev
Handling hatchling from build-system.requires
Requirement not satisfied: hatchling
Handling hatch-vcs from build-system.requires
Requirement not satisfied: hatch-vcs
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-5.fc42.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'], chrootPath='/var/lib/mock/f42-build-58354888-6564693/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff83d4d370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b073a0086799474dbfca5df8e1d05513', '-D', '/var/lib/mock/f42-build-58354888-6564693/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1737158400
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.4BJuW0
+ umask 022
+ cd /builddir/build/BUILD/python-bioframe-0.7.2-build
+ cd bioframe-0.7.2
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-buildrequires -x dev
Handling hatchling from build-system.requires
Requirement satisfied: hatchling
   (installed: hatchling 1.27.0)
Handling hatch-vcs from build-system.requires
Requirement satisfied: hatch-vcs
   (installed: hatch-vcs 0.4.0)
Handling importlib-metadata; python_version < '3.8' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: importlib-metadata; python_version < '3.8'
Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: importlib-resources; python_version < '3.9'
Handling matplotlib from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: matplotlib
Handling numpy>=1.10 from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: numpy>=1.10
Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: pandas>=1.3
Handling pyyaml from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: pyyaml
Handling requests from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: requests
Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: typing-extensions; python_version < '3.9'
Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: biopython; extra == 'dev'
Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: pybbi; extra == 'dev'
Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: pysam; extra == 'dev'
Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: pytest; extra == 'dev'
Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: autodocsumm; extra == 'docs'
Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: jinja2; extra == 'docs'
Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: myst-nb; extra == 'docs'
Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx; extra == 'docs'
Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-autobuild; extra == 'docs'
Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs'
Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pytest; extra == 'test'
+ cat /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-buildrequires
+ rm -rfv bioframe-0.7.2.dist-info/
removed 'bioframe-0.7.2.dist-info/METADATA'
removed directory 'bioframe-0.7.2.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-5.fc42.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'], chrootPath='/var/lib/mock/f42-build-58354888-6564693/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff83d4d370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '6f8e5f6697384bccb00af62872319375', '-D', '/var/lib/mock/f42-build-58354888-6564693/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1737158400
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.OSLX6t
+ umask 022
+ cd /builddir/build/BUILD/python-bioframe-0.7.2-build
+ cd bioframe-0.7.2
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-buildrequires -x dev
Handling hatchling from build-system.requires
Requirement satisfied: hatchling
   (installed: hatchling 1.27.0)
Handling hatch-vcs from build-system.requires
Requirement satisfied: hatch-vcs
   (installed: hatch-vcs 0.4.0)
Handling importlib-metadata; python_version < '3.8' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: importlib-metadata; python_version < '3.8'
Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: importlib-resources; python_version < '3.9'
Handling matplotlib from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: matplotlib
   (installed: matplotlib 3.10.0)
Handling numpy>=1.10 from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: numpy>=1.10
   (installed: numpy 2.2.4)
Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pandas>=1.3
   (installed: pandas 2.2.3)
Handling pyyaml from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pyyaml
   (installed: pyyaml 6.0.2)
Handling requests from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: requests
   (installed: requests 2.32.3)
Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: typing-extensions; python_version < '3.9'
Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: biopython; extra == 'dev'
   (installed: biopython 1.85)
Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pybbi; extra == 'dev'
   (installed: pybbi 0.4.1)
Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pysam; extra == 'dev'
   (installed: pysam 0.22.1)
Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pytest; extra == 'dev'
   (installed: pytest 8.3.4)
Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: autodocsumm; extra == 'docs'
Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: jinja2; extra == 'docs'
Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: myst-nb; extra == 'docs'
Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx; extra == 'docs'
Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-autobuild; extra == 'docs'
Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs'
Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pytest; extra == 'test'
+ cat /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-buildrequires
+ rm -rfv bioframe-0.7.2.dist-info/
removed 'bioframe-0.7.2.dist-info/METADATA'
removed directory 'bioframe-0.7.2.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-5.fc42.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-bioframe.spec'], chrootPath='/var/lib/mock/f42-build-58354888-6564693/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff83d4d370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0f98f8d013d04c0f9e105493ccec03eb', '-D', '/var/lib/mock/f42-build-58354888-6564693/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xaf5fj6b:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-bioframe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1737158400
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.2mQ5jl
+ umask 022
+ cd /builddir/build/BUILD/python-bioframe-0.7.2-build
+ cd bioframe-0.7.2
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-buildrequires -x dev
Handling hatchling from build-system.requires
Requirement satisfied: hatchling
   (installed: hatchling 1.27.0)
Handling hatch-vcs from build-system.requires
Requirement satisfied: hatch-vcs
   (installed: hatch-vcs 0.4.0)
Handling importlib-metadata; python_version < '3.8' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: importlib-metadata; python_version < '3.8'
Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: importlib-resources; python_version < '3.9'
Handling matplotlib from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: matplotlib
   (installed: matplotlib 3.10.0)
Handling numpy>=1.10 from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: numpy>=1.10
   (installed: numpy 2.2.4)
Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pandas>=1.3
   (installed: pandas 2.2.3)
Handling pyyaml from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pyyaml
   (installed: pyyaml 6.0.2)
Handling requests from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: requests
   (installed: requests 2.32.3)
Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: typing-extensions; python_version < '3.9'
Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: biopython; extra == 'dev'
   (installed: biopython 1.85)
Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pybbi; extra == 'dev'
   (installed: pybbi 0.4.1)
Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pysam; extra == 'dev'
   (installed: pysam 0.22.1)
Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pytest; extra == 'dev'
   (installed: pytest 8.3.4)
Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: autodocsumm; extra == 'docs'
Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: jinja2; extra == 'docs'
Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: myst-nb; extra == 'docs'
Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx; extra == 'docs'
Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-autobuild; extra == 'docs'
Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs'
Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pytest; extra == 'test'
+ cat /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-buildrequires
+ rm -rfv bioframe-0.7.2.dist-info/
removed 'bioframe-0.7.2.dist-info/METADATA'
removed directory 'bioframe-0.7.2.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.w6UL9G
+ umask 022
+ cd /builddir/build/BUILD/python-bioframe-0.7.2-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bioframe-0.7.2
+ mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir
Processing /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: bioframe
  Building wheel for bioframe (pyproject.toml): started
  Running command Building wheel for bioframe (pyproject.toml)
  Building wheel for bioframe (pyproject.toml): finished with status 'done'
  Created wheel for bioframe: filename=bioframe-0.7.2-py2.py3-none-any.whl size=150132 sha256=f1d8be3deb2750abb410ad8e8a2bf740ecea982aa0c4b2fe37b0533e3b986bff
  Stored in directory: /builddir/.cache/pip/wheels/5d/a8/60/6a64a2231b29479330b4a8baa2a29c5e106f0da75ee579e27d
Successfully built bioframe
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.myc6Bs
+ umask 022
+ cd /builddir/build/BUILD/python-bioframe-0.7.2-build
+ '[' /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT
++ dirname /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build
+ mkdir /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bioframe-0.7.2
++ ls /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir/bioframe-0.7.2-py2.py3-none-any.whl
++ xargs basename --multiple
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=bioframe==0.7.2
+ '[' -z bioframe==0.7.2 ']'
+ TMPDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir bioframe==0.7.2
Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13)
Looking in links: /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/pyproject-wheeldir
Processing ./pyproject-wheeldir/bioframe-0.7.2-py2.py3-none-any.whl
Installing collected packages: bioframe
Successfully installed bioframe-0.7.2
+ '[' -d /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/bin ']'
+ rm -f /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ site_dirs+=("/usr/lib/python3.13/site-packages")
+ '[' /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' -d /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib64/python3.13/site-packages ']'
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT$site_dir/*.dist-info
+ echo '%ghost /usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT --record /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/RECORD --output /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-record
+ rm -fv /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/RECORD
removed '/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/RECORD'
+ rm -fv /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/REQUESTED
removed '/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe-0.7.2.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_FILES_ESCAPE=4.19
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-files --output-modules /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-modules --buildroot /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-record --prefix /usr -l bioframe
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip /usr/bin/strip
+ /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j12
Bytecompiling .py files below /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j12 /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/specs.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/stringops.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/construction.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/checks.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/assembly.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/schemas.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/checks.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/resources.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/core/__pycache__/arrops.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/sandbox/__pycache__/gtf_io.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/fileops.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/sandbox/__pycache__/parquet_io.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/bed.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/__pycache__/vis.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/io/__pycache__/fileops.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/sandbox/__pycache__/clients.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/__pycache__/extras.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/__pycache__/ops.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages/bioframe/__pycache__/ops.cpython-313.opt-1.pyc: replacing with normalized version
Scanned 16 directories and 79 files,
               processed 22 inodes,
               22 modified (6 replaced + 16 rewritten),
               0 unsupported format, 0 errors
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.V3rheY
+ umask 022
+ cd /builddir/build/BUILD/python-bioframe-0.7.2-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bioframe-0.7.2
+ '[' '!' -f /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-modules ']'
+ PATH=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages
+ _PYTHONSITE=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-bioframe-0.7.2-build/python-bioframe-0.7.2-5.fc42.noarch-pyproject-modules
Check import: bioframe
Check import: bioframe.core
Check import: bioframe.core.arrops
Check import: bioframe.core.checks
Check import: bioframe.core.construction
Check import: bioframe.core.specs
Check import: bioframe.core.stringops
Check import: bioframe.extras
Check import: bioframe.io
Check import: bioframe.io.assembly
Check import: bioframe.io.bed
Check import: bioframe.io.fileops
Check import: bioframe.io.resources
Check import: bioframe.io.schemas
Check import: bioframe.ops
Check import: bioframe.sandbox
Check import: bioframe.sandbox.clients
Check import: bioframe.sandbox.gtf_io
Check import: bioframe.sandbox.parquet_io
Check import: bioframe.vis
+ k='not test_fetch'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ PATH=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/lib/python3.13/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=12
+ /usr/bin/pytest -v -k 'not test_fetch'
============================= test session starts ==============================
platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2
configfile: pyproject.toml
collecting ... collected 73 items / 3 deselected / 70 selected
tests/test_assembly_info.py::test_assemblies_available PASSED            [  1%]
tests/test_assembly_info.py::test_assembly_info PASSED                   [  2%]
tests/test_bed.py::test_involution PASSED                                [  4%]
tests/test_bed.py::test_chrom_validators PASSED                          [  5%]
tests/test_bed.py::test_end_validators PASSED                            [  7%]
tests/test_bed.py::test_name_validators PASSED                           [  8%]
tests/test_bed.py::test_score_validators PASSED                          [ 10%]
tests/test_bed.py::test_strand_validators PASSED                         [ 11%]
tests/test_bed.py::test_thick_validators PASSED                          [ 12%]
tests/test_bed.py::test_itemRgb_validators PASSED                        [ 14%]
tests/test_bed.py::test_blockCount_validators PASSED                     [ 15%]
tests/test_bed.py::test_blockSizes_validators PASSED                     [ 17%]
tests/test_bed.py::test_blockStarts_validators PASSED                    [ 18%]
tests/test_core_checks.py::test_is_cataloged PASSED                      [ 20%]
tests/test_core_checks.py::test_is_contained PASSED                      [ 21%]
tests/test_core_checks.py::test_is_overlapping PASSED                    [ 22%]
tests/test_core_checks.py::test_is_covering PASSED                       [ 24%]
tests/test_core_checks.py::test_is_tiling PASSED                         [ 25%]
tests/test_core_checks.py::test_is_bedframe PASSED                       [ 27%]
tests/test_core_checks.py::test_is_viewframe PASSED                      [ 28%]
tests/test_core_checks.py::test_is_sorted PASSED                         [ 30%]
tests/test_core_construction.py::test_add_ucsc_name_column PASSED        [ 31%]
tests/test_core_construction.py::test_any PASSED                         [ 32%]
tests/test_core_construction.py::test_sanitize_bedframe PASSED           [ 34%]
tests/test_core_construction.py::test_make_viewframe PASSED              [ 35%]
tests/test_core_specs.py::test_get_default_colnames PASSED               [ 37%]
tests/test_core_specs.py::test_update_default_colnames PASSED            [ 38%]
tests/test_core_specs.py::test_verify_columns PASSED                     [ 40%]
tests/test_core_specs.py::test_verify_column_dtypes PASSED               [ 41%]
tests/test_core_specs.py::test_is_chrom_dtype PASSED                     [ 42%]
tests/test_core_stringops.py::test_to_ucsc_string PASSED                 [ 44%]
tests/test_core_stringops.py::test_parse_region PASSED                   [ 45%]
tests/test_core_stringops.py::test_parse_region_string PASSED            [ 47%]
tests/test_core_stringops.py::test_is_complete_ucsc_string PASSED        [ 48%]
tests/test_extras.py::test_make_chromarms PASSED                         [ 50%]
tests/test_extras.py::test_binnify PASSED                                [ 51%]
tests/test_extras.py::test_digest PASSED                                 [ 52%]
tests/test_extras.py::test_frac_mapped PASSED                            [ 54%]
tests/test_extras.py::test_frac_gc PASSED                                [ 55%]
tests/test_extras.py::test_seq_gc PASSED                                 [ 57%]
tests/test_extras.py::test_pair_by_distance PASSED                       [ 58%]
tests/test_fileops.py::test_read_table PASSED                            [ 60%]
tests/test_fileops.py::test_read_chromsizes PASSED                       [ 61%]
tests/test_fileops.py::test_read_beds PASSED                             [ 62%]
tests/test_fileops.py::test_read_sam PASSED                              [ 64%]
tests/test_fileops.py::test_read_bam PASSED                              [ 65%]
tests/test_ops.py::test_trim PASSED                                      [ 67%]
tests/test_ops.py::test_expand PASSED                                    [ 68%]
tests/test_ops.py::test_expand_amount_args PASSED                        [ 70%]
tests/test_ops.py::test_overlap PASSED                                   [ 71%]
tests/test_ops.py::test_overlap_preserves_coord_dtypes PASSED            [ 72%]
tests/test_ops.py::test_overlap_ensure_int PASSED                        [ 74%]
tests/test_ops.py::test_cluster PASSED                                   [ 75%]
tests/test_ops.py::test_merge PASSED                                     [ 77%]
tests/test_ops.py::test_complement PASSED                                [ 78%]
tests/test_ops.py::test_closest PASSED                                   [ 80%]
tests/test_ops.py::test_coverage PASSED                                  [ 81%]
tests/test_ops.py::test_subtract PASSED                                  [ 82%]
tests/test_ops.py::test_setdiff PASSED                                   [ 84%]
tests/test_ops.py::test_count_overlaps PASSED                            [ 85%]
tests/test_ops.py::test_assign_view PASSED                               [ 87%]
tests/test_ops.py::test_sort_bedframe PASSED                             [ 88%]
tests/test_ops_select.py::test_select PASSED                             [ 90%]
tests/test_ops_select.py::test_select__with_colnames PASSED              [ 91%]
tests/test_ops_select.py::test_select__with_nulls PASSED                 [ 92%]
tests/test_ops_select.py::test_select__mask_indices_labels PASSED        [ 94%]
tests/test_ops_select.py::test_select__query_intervals_are_half_open PASSED [ 95%]
tests/test_ops_select.py::test_select__with_point_intervals PASSED       [ 97%]
tests/test_ops_select.py::test_select__with_points PASSED                [ 98%]
tests/test_vis.py::test_to_ucsc_colorstring PASSED                       [100%]
======================= 70 passed, 3 deselected in 4.37s =======================
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: python3-bioframe-0.7.2-5.fc42.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.4bg1FH
+ umask 022
+ cd /builddir/build/BUILD/python-bioframe-0.7.2-build
+ cd bioframe-0.7.2
+ DOCDIR=/builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe
+ cp -pr /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/README.md /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe
+ cp -pr /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/CONTRIBUTING.md /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe
+ cp -pr /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/CITATION.cff /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe
+ cp -pr /builddir/build/BUILD/python-bioframe-0.7.2-build/bioframe-0.7.2/CHANGES.md /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT/usr/share/doc/python3-bioframe
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-bioframe = 0.7.2-5.fc42 python3-bioframe = 0.7.2-5.fc42 python3.13-bioframe = 0.7.2-5.fc42 python3.13dist(bioframe) = 0.7.2 python3dist(bioframe) = 0.7.2
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.13 python3.13dist(matplotlib) python3.13dist(numpy) >= 1.10 python3.13dist(pandas) >= 1.3 python3.13dist(pyyaml) python3.13dist(requests)
Recommends: python3dist(biopython) python3dist(pybbi) python3dist(pysam)
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-bioframe-0.7.2-build/BUILDROOT
Wrote: /builddir/build/SRPMS/python-bioframe-0.7.2-5.fc42.src.rpm
Wrote: /builddir/build/RPMS/python3-bioframe-0.7.2-5.fc42.noarch.rpm
Child return code was: 0