Mock Version: 6.1 Mock Version: 6.1 Mock Version: 6.1 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/R-affyio.spec'], chrootPath='/var/lib/mock/f43-build-side-110352-58920067-6569255/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._01or5v5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._01or5v5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '7ec8af6b67d54d6da96320435904a0a5', '-D', '/var/lib/mock/f43-build-side-110352-58920067-6569255/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._01or5v5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/R-affyio.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1744934400 Wrote: /builddir/build/SRPMS/R-affyio-1.66.0-13.fc43.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/R-affyio.spec'], chrootPath='/var/lib/mock/f43-build-side-110352-58920067-6569255/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._01or5v5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._01or5v5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '5751d33062f245b28c139a60ac1eeddd', '-D', '/var/lib/mock/f43-build-side-110352-58920067-6569255/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._01or5v5:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/R-affyio.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1744934400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.p0Qy47 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TiYdrc + umask 022 + cd /builddir/build/BUILD/R-affyio-1.66.0-build + cd /builddir/build/BUILD/R-affyio-1.66.0-build + rm -rf affyio + /usr/bin/mkdir -p affyio + cd affyio + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/affyio_1.66.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i '/Imports: zlibbioc/d' affyio/DESCRIPTION + sed -i '/import(zlibbioc)/d' affyio/NAMESPACE Patch #0 (affyio-fix-DESCRIPTION-Depends.patch): + echo 'Patch #0 (affyio-fix-DESCRIPTION-Depends.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .fixdep --fuzz=0 patching file affyio/DESCRIPTION + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.aVX4c0 + umask 022 + cd /builddir/build/BUILD/R-affyio-1.66.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd affyio + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.C1IUPA + umask 022 + cd /builddir/build/BUILD/R-affyio-1.66.0-build + '[' /builddir/build/BUILD/R-affyio-1.66.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-affyio-1.66.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-affyio-1.66.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-affyio-1.66.0-build + mkdir /builddir/build/BUILD/R-affyio-1.66.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd affyio + rm -rf /builddir/build/BUILD/R-affyio-1.66.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-affyio-1.66.0-build/BUILDROOT/usr/lib64/R/library + R CMD INSTALL affyio -l /builddir/build/BUILD/R-affyio-1.66.0-build/BUILDROOT/usr/lib64/R/library * installing *source* package ‘affyio’ ... ** this is package ‘affyio’ version ‘1.66.0’ ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for main in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes checking for pthread_create in -lpthread... yes checking if we can use pthreads... yes checking if PTHREAD_STACK_MIN is defined... yes configure: Enabling threading for affyio configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc (GCC) 15.0.1 20250417 (Red Hat 15.0.1-0)’ gcc -std=gnu23 -I"/usr/include/R" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c fread_functions.c -o fread_functions.o gcc -std=gnu23 -I"/usr/include/R" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init_package.c -o init_package.o gcc -std=gnu23 -I"/usr/include/R" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c read_abatch.c -o read_abatch.o read_abatch.c: In function ‘tokenize’: read_abatch.c:309:27: error: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration] 309 | tokenset *my_tokenset = Calloc(1,tokenset); | ^~~~~~ | calloc read_abatch.c:309:36: error: expected expression before ‘tokenset’ 309 | tokenset *my_tokenset = Calloc(1,tokenset); | ^~~~~~~~ read_abatch.c:320:27: error: implicit declaration of function ‘Realloc’; did you mean ‘realloc’? [-Wimplicit-function-declaration] 320 | my_tokenset->tokens = Realloc(my_tokenset->tokens,my_tokenset->n,char*); | ^~~~~~~ | realloc read_abatch.c:320:70: error: expected expression before ‘char’ 320 | my_tokenset->tokens = Realloc(my_tokenset->tokens,my_tokenset->n,char*); | ^~~~ read_abatch.c:321:61: error: expected expression before ‘char’ 321 | my_tokenset->tokens[i] = Calloc(strlen(current_token)+1,char); | ^~~~ read_abatch.c: In function ‘delete_tokens’: read_abatch.c:380:5: error: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration] 380 | Free(x->tokens[i]); | ^~~~ | free read_abatch.c: In function ‘read_cel_file_intensities’: read_abatch.c:656:176: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 656 | Rprintf("Warning: found an empty line where not expected in %s.\nThis means that there is a cel intensity missing from the cel file.\nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:656:182: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 656 | Rprintf("Warning: found an empty line where not expected in %s.\nThis means that there is a cel intensity missing from the cel file.\nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:665:146: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:665:152: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:677:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:677:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:689:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:689:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_cel_file_stddev’: read_abatch.c:764:178: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 764 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:764:184: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 764 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:774:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 774 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:774:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 774 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:785:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 785 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:785:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 785 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:795:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 795 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:795:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 795 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:805:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 805 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:805:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 805 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_cel_file_npixels’: read_abatch.c:870:178: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 870 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:870:184: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 870 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:879:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 879 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:879:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 879 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:890:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 890 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:890:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 890 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:901:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 901 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:901:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 901 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:913:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 913 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:913:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 913 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:924:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 924 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:924:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 924 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘get_masks_outliers’: read_abatch.c:1076:30: error: expected expression before ‘short’ 1076 | *masks_x = Calloc(numcells,short); | ^~~~~ read_abatch.c:1077:30: error: expected expression before ‘short’ 1077 | *masks_y = Calloc(numcells,short); | ^~~~~ read_abatch.c:1104:33: error: expected expression before ‘short’ 1104 | *outliers_x = Calloc(numcells,short); | ^~~~~ read_abatch.c:1105:33: error: expected expression before ‘short’ 1105 | *outliers_y = Calloc(numcells,short); | ^~~~~ read_abatch.c: In function ‘get_header_info’: read_abatch.c:1172:32: error: expected expression before ‘char’ 1172 | cdfName= Calloc(endpos+1,char); | ^~~~ read_abatch.c: In function ‘get_detailed_header_info’: read_abatch.c:1250:41: error: expected expression before ‘char’ 1250 | buffercopy = Calloc(strlen(buffer)+1,char); | ^~~~ read_abatch.c:1253:71: error: expected expression before ‘char’ 1253 | header_info->DatHeader = Calloc(strlen(get_token(cur_tokenset,0))-8,char); | ^~~~ read_abatch.c:1267:45: error: expected expression before ‘char’ 1267 | header_info->cdfName= Calloc(endpos+1,char); | ^~~~ read_abatch.c:1281:71: error: expected expression before ‘char’ 1281 | header_info->Algorithm = Calloc(strlen(get_token(cur_tokenset,1))+1,char); | ^~~~ read_abatch.c:1289:81: error: expected expression before ‘char’ 1289 | header_info->AlgorithmParameters = Calloc(strlen(get_token(cur_tokenset,1))+1,char); | ^~~~ read_abatch.c:1294:37: error: expected expression before ‘char’ 1294 | header_info->ScanDate = Calloc(2, char); | ^~~~ read_abatch.c: In function ‘read_gzcel_file_intensities’: read_abatch.c:1567:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1567 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1567:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1567 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1578:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1578 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1578:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1578 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1589:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1589 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1589:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1589 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_gzcel_file_stddev’: read_abatch.c:1665:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1665:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1677:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1677:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1689:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1689:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1701:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1701 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1701:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1701 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_gzcel_file_npixels’: read_abatch.c:1769:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1769 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1769:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1769 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1780:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1780 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1780:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1780 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1791:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1791 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1791:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1791 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1801:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1801 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1801:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1801 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1811:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1811 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1811:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1811 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘gz_get_header_info’: read_abatch.c:1961:32: error: expected expression before ‘char’ 1961 | cdfName= Calloc(endpos+1,char); | ^~~~ read_abatch.c: In function ‘gz_get_detailed_header_info’: read_abatch.c:2041:41: error: expected expression before ‘char’ 2041 | buffercopy = Calloc(strlen(buffer)+1,char); | ^~~~ read_abatch.c:2044:71: error: expected expression before ‘char’ 2044 | header_info->DatHeader = Calloc(strlen(get_token(cur_tokenset,0))-8,char); | ^~~~ read_abatch.c:2058:45: error: expected expression before ‘char’ 2058 | header_info->cdfName= Calloc(endpos+1,char); | ^~~~ read_abatch.c:2072:71: error: expected expression before ‘char’ 2072 | header_info->Algorithm = Calloc(strlen(get_token(cur_tokenset,1))+1,char); | ^~~~ read_abatch.c:2080:81: error: expected expression before ‘char’ 2080 | header_info->AlgorithmParameters = Calloc(strlen(get_token(cur_tokenset,1))+1,char); | ^~~~ read_abatch.c:2085:37: error: expected expression before ‘char’ 2085 | header_info->ScanDate = Calloc(2, char); | ^~~~ read_abatch.c: In function ‘gz_get_masks_outliers’: read_abatch.c:2124:30: error: expected expression before ‘short’ 2124 | *masks_x = Calloc(numcells,short); | ^~~~~ read_abatch.c:2125:30: error: expected expression before ‘short’ 2125 | *masks_y = Calloc(numcells,short); | ^~~~~ read_abatch.c:2152:33: error: expected expression before ‘short’ 2152 | *outliers_x = Calloc(numcells,short); | ^~~~~ read_abatch.c:2153:33: error: expected expression before ‘short’ 2153 | *outliers_y = Calloc(numcells,short); | ^~~~~ read_abatch.c: In function ‘read_binary_header’: read_abatch.c:2444:41: error: expected expression before ‘binary_header’ 2444 | binary_header *this_header = Calloc(1,binary_header); | ^~~~~~~~~~~~~ read_abatch.c:2507:58: error: expected expression before ‘char’ 2507 | this_header->header = Calloc(this_header->header_len+1,char); | ^~~~ read_abatch.c:2517:58: error: expected expression before ‘char’ 2517 | this_header->algorithm = Calloc(this_header->alg_len+1,char); | ^~~~ read_abatch.c:2527:64: error: expected expression before ‘char’ 2527 | this_header->alg_param = Calloc(this_header->alg_param_len+1,char); | ^~~~ read_abatch.c: In function ‘binary_get_header_info’: read_abatch.c:2596:32: error: expected expression before ‘char’ 2596 | cdfName= Calloc(endpos+1,char); | ^~~~ read_abatch.c: In function ‘binary_get_detailed_header_info’: read_abatch.c:2656:66: error: expected expression before ‘char’ 2656 | header_info->Algorithm = Calloc(strlen(my_header->algorithm)+1,char); | ^~~~ read_abatch.c:2660:76: error: expected expression before ‘char’ 2660 | header_info->AlgorithmParameters = Calloc(strlen(my_header->alg_param)+1,char); | ^~~~ read_abatch.c:2667:53: error: expected expression before ‘char’ 2667 | header_copy = Calloc(strlen(my_header->header) +1,char); | ^~~~ read_abatch.c:2677:61: error: expected expression before ‘char’ 2677 | tmpbuffer = Calloc(strlen(get_token(my_tokenset,i))+1,char); | ^~~~ read_abatch.c:2687:61: error: expected expression before ‘char’ 2687 | tmpbuffer = Calloc(strlen(get_token(my_tokenset,i))+1,char); | ^~~~ read_abatch.c:2697:61: error: expected expression before ‘char’ 2697 | tmpbuffer = Calloc(strlen(get_token(my_tokenset,i))+1,char); | ^~~~ read_abatch.c:2707:61: error: expected expression before ‘char’ 2707 | tmpbuffer = Calloc(strlen(get_token(my_tokenset,i))+1,char); | ^~~~ read_abatch.c:2717:75: error: expected expression before ‘char’ 2717 | header_info->DatHeader = Calloc(strlen(get_token(my_tokenset,i))+1, char); | ^~~~ read_abatch.c:2728:49: error: expected expression before ‘char’ 2728 | header_copy = Calloc(my_header->header_len +1,char); | ^~~~ read_abatch.c:2737:45: error: expected expression before ‘char’ 2737 | header_info->cdfName= Calloc(endpos+1,char); | ^~~~ read_abatch.c:2748:37: error: expected expression before ‘char’ 2748 | header_info->ScanDate = Calloc(2, char); | ^~~~ read_abatch.c: In function ‘check_binary_cel_file’: read_abatch.c:2807:32: error: expected expression before ‘char’ 2807 | cdfName= Calloc(endpos+1,char); | ^~~~ read_abatch.c: In function ‘read_binarycel_file_intensities’: read_abatch.c:2851:46: error: expected expression before ‘celintens_record’ 2851 | celintens_record *cur_intensity = Calloc(1,celintens_record); | ^~~~~~~~~~~~~~~~ read_abatch.c: In function ‘read_binarycel_file_stddev’: read_abatch.c:2904:46: error: expected expression before ‘celintens_record’ 2904 | celintens_record *cur_intensity = Calloc(1,celintens_record); | ^~~~~~~~~~~~~~~~ read_abatch.c: In function ‘read_binarycel_file_npixels’: read_abatch.c:2951:46: error: expected expression before ‘celintens_record’ 2951 | celintens_record *cur_intensity = Calloc(1,celintens_record); | ^~~~~~~~~~~~~~~~ read_abatch.c: In function ‘binary_apply_masks’: read_abatch.c:3010:38: error: expected expression before ‘outliermask_loc’ 3010 | outliermask_loc *cur_loc= Calloc(1,outliermask_loc); | ^~~~~~~~~~~~~~~ read_abatch.c: In function ‘binary_get_masks_outliers’: read_abatch.c:3072:38: error: expected expression before ‘outliermask_loc’ 3072 | outliermask_loc *cur_loc= Calloc(1,outliermask_loc); | ^~~~~~~~~~~~~~~ read_abatch.c:3083:40: error: expected expression before ‘short’ 3083 | *masks_x = Calloc(my_header->n_masks,short); | ^~~~~ read_abatch.c:3084:40: error: expected expression before ‘short’ 3084 | *masks_y = Calloc(my_header->n_masks,short); | ^~~~~ read_abatch.c:3095:46: error: expected expression before ‘short’ 3095 | *outliers_x = Calloc(my_header->n_outliers,short); | ^~~~~ read_abatch.c:3096:46: error: expected expression before ‘short’ 3096 | *outliers_y = Calloc(my_header->n_outliers,short); | ^~~~~ read_abatch.c: In function ‘gzread_binary_header’: read_abatch.c:3199:41: error: expected expression before ‘binary_header’ 3199 | binary_header *this_header = Calloc(1,binary_header); | ^~~~~~~~~~~~~ read_abatch.c:3256:58: error: expected expression before ‘char’ 3256 | this_header->header = Calloc(this_header->header_len+1,char); | ^~~~ read_abatch.c:3266:58: error: expected expression before ‘char’ 3266 | this_header->algorithm = Calloc(this_header->alg_len+1,char); | ^~~~ read_abatch.c:3276:64: error: expected expression before ‘char’ 3276 | this_header->alg_param = Calloc(this_header->alg_param_len+1,char); | ^~~~ read_abatch.c: In function ‘gzbinary_get_header_info’: read_abatch.c:3347:32: error: expected expression before ‘char’ 3347 | cdfName= Calloc(endpos+1,char); | ^~~~ read_abatch.c: In function ‘gzbinary_get_detailed_header_info’: read_abatch.c:3405:66: error: expected expression before ‘char’ 3405 | header_info->Algorithm = Calloc(strlen(my_header->algorithm)+1,char); | ^~~~ read_abatch.c:3409:76: error: expected expression before ‘char’ 3409 | header_info->AlgorithmParameters = Calloc(strlen(my_header->alg_param)+1,char); | ^~~~ read_abatch.c:3416:53: error: expected expression before ‘char’ 3416 | header_copy = Calloc(strlen(my_header->header) +1,char); | ^~~~ read_abatch.c:3426:61: error: expected expression before ‘char’ 3426 | tmpbuffer = Calloc(strlen(get_token(my_tokenset,i))+1,char); | ^~~~ read_abatch.c:3436:61: error: expected expression before ‘char’ 3436 | tmpbuffer = Calloc(strlen(get_token(my_tokenset,i))+1,char); | ^~~~ read_abatch.c:3446:61: error: expected expression before ‘char’ 3446 | tmpbuffer = Calloc(strlen(get_token(my_tokenset,i))+1,char); | ^~~~ read_abatch.c:3456:61: error: expected expression before ‘char’ 3456 | tmpbuffer = Calloc(strlen(get_token(my_tokenset,i))+1,char); | ^~~~ read_abatch.c:3466:75: error: expected expression before ‘char’ 3466 | header_info->DatHeader = Calloc(strlen(get_token(my_tokenset,i))+1, char); | ^~~~ read_abatch.c:3477:49: error: expected expression before ‘char’ 3477 | header_copy = Calloc(my_header->header_len +1,char); | ^~~~ read_abatch.c:3486:45: error: expected expression before ‘char’ 3486 | header_info->cdfName= Calloc(endpos+1,char); | ^~~~ read_abatch.c:3498:37: error: expected expression before ‘char’ 3498 | header_info->ScanDate = Calloc(2, char); | ^~~~ read_abatch.c: In function ‘check_gzbinary_cel_file’: read_abatch.c:3546:32: error: expected expression before ‘char’ 3546 | cdfName= Calloc(endpos+1,char); | ^~~~ read_abatch.c: In function ‘gzread_binarycel_file_intensities’: read_abatch.c:3590:46: error: expected expression before ‘celintens_record’ 3590 | celintens_record *cur_intensity = Calloc(1,celintens_record); | ^~~~~~~~~~~~~~~~ read_abatch.c: In function ‘gzread_binarycel_file_stddev’: read_abatch.c:3643:46: error: expected expression before ‘celintens_record’ 3643 | celintens_record *cur_intensity = Calloc(1,celintens_record); | ^~~~~~~~~~~~~~~~ read_abatch.c: In function ‘gzread_binarycel_file_npixels’: read_abatch.c:3691:46: error: expected expression before ‘celintens_record’ 3691 | celintens_record *cur_intensity = Calloc(1,celintens_record); | ^~~~~~~~~~~~~~~~ read_abatch.c: In function ‘gz_binary_apply_masks’: read_abatch.c:3738:38: error: expected expression before ‘outliermask_loc’ 3738 | outliermask_loc *cur_loc= Calloc(1,outliermask_loc); | ^~~~~~~~~~~~~~~ read_abatch.c: In function ‘gzbinary_get_masks_outliers’: read_abatch.c:3801:38: error: expected expression before ‘outliermask_loc’ 3801 | outliermask_loc *cur_loc= Calloc(1,outliermask_loc); | ^~~~~~~~~~~~~~~ read_abatch.c:3812:40: error: expected expression before ‘short’ 3812 | *masks_x = Calloc(my_header->n_masks,short); | ^~~~~ read_abatch.c:3813:40: error: expected expression before ‘short’ 3813 | *masks_y = Calloc(my_header->n_masks,short); | ^~~~~ read_abatch.c:3824:46: error: expected expression before ‘short’ 3824 | *outliers_x = Calloc(my_header->n_outliers,short); | ^~~~~ read_abatch.c:3825:46: error: expected expression before ‘short’ 3825 | *outliers_y = Calloc(my_header->n_outliers,short); | ^~~~~ read_abatch.c: In function ‘readfile_group’: read_abatch.c:4382:71: error: expected expression before ‘double’ 4382 | args->CurintensityMatrix = Calloc(args->ref_dim_1*args->ref_dim_2, double); | ^~~~~~ read_abatch.c: In function ‘read_probeintensities’: read_abatch.c:4530:47: error: expected expression before ‘pthread_t’ 4530 | threads = (pthread_t *) Calloc(num_threads, pthread_t); | ^~~~~~~~~ read_abatch.c:4555:42: error: expected expression before ‘int’ 4555 | n_probes = (int *) Calloc(n_probesets, int); | ^~~ read_abatch.c:4556:49: error: expected expression before ‘double’ 4556 | cur_indexes = (double **) Calloc(n_probesets, double *); | ^~~~~~ read_abatch.c:4563:55: error: expected expression before ‘double’ 4563 | cur_indexes[i] = (double *) Calloc(n_probes[i]*2, double); | ^~~~~~ read_abatch.c:4566:89: error: expected expression before ‘struct’ 4566 | args = (struct thread_data *) Calloc((n_files < num_threads ? n_files : num_threads), struct thread_data); | ^~~~~~ read_abatch.c: In function ‘read_cel_file’: read_abatch.c:5182:22: error: expected expression before ‘CEL’ 5182 | my_CEL = Calloc(1, CEL); | ^~~ read_abatch.c:5208:56: error: expected expression before ‘char’ 5208 | my_CEL->channelnames = Calloc(my_CEL->multichannel,char*); | ^~~~ read_abatch.c:5215:56: error: expected expression before ‘char’ 5215 | my_CEL->channelnames = Calloc(my_CEL->multichannel,char*); | ^~~~ read_abatch.c:5230:36: error: expected expression before ‘double’ 5230 | my_CEL->intensities = Calloc(1,double *); | ^~~~~~ read_abatch.c:5231:81: error: expected expression before ‘double’ 5231 | my_CEL->intensities[0] = Calloc((my_CEL->header.cols)*(my_CEL->header.rows),double); | ^~~~~~ read_abatch.c:5233:33: error: expected expression before ‘double’ 5233 | my_CEL->stddev = Calloc(1,double *); | ^~~~~~ read_abatch.c:5234:34: error: expected expression before ‘double’ 5234 | my_CEL->npixels = Calloc(1,double *); | ^~~~~~ read_abatch.c:5235:78: error: expected expression before ‘double’ 5235 | my_CEL->stddev[0] = Calloc((my_CEL->header.cols)*(my_CEL->header.rows),double); | ^~~~~~ read_abatch.c:5236:79: error: expected expression before ‘double’ 5236 | my_CEL->npixels[0] = Calloc((my_CEL->header.cols)*(my_CEL->header.rows),double); | ^~~~~~ read_abatch.c:5242:55: error: expected expression before ‘double’ 5242 | my_CEL->intensities = Calloc(my_CEL->multichannel,double *); | ^~~~~~ read_abatch.c:5244:83: error: expected expression before ‘double’ 5244 | my_CEL->intensities[i] = Calloc((my_CEL->header.cols)*(my_CEL->header.rows),double); | ^~~~~~ read_abatch.c:5247:52: error: expected expression before ‘double’ 5247 | my_CEL->stddev = Calloc(my_CEL->multichannel,double *); | ^~~~~~ read_abatch.c:5248:53: error: expected expression before ‘double’ 5248 | my_CEL->npixels = Calloc(my_CEL->multichannel,double *); | ^~~~~~ read_abatch.c:5250:80: error: expected expression before ‘double’ 5250 | my_CEL->stddev[i] = Calloc((my_CEL->header.cols)*(my_CEL->header.rows),double); | ^~~~~~ read_abatch.c:5251:81: error: expected expression before ‘double’ 5251 | my_CEL->npixels[i] = Calloc((my_CEL->header.cols)*(my_CEL->header.rows),double); | ^~~~~~ read_abatch.c:5334:32: error: expected expression before ‘int’ 5334 | my_CEL->nmasks = Calloc(1, int); | ^~~ read_abatch.c:5335:35: error: expected expression before ‘int’ 5335 | my_CEL->noutliers = Calloc(1, int); | ^~~ read_abatch.c:5336:33: error: expected expression before ‘short’ 5336 | my_CEL->masks_x = Calloc(1, short *); | ^~~~~ read_abatch.c:5337:33: error: expected expression before ‘short’ 5337 | my_CEL->masks_y = Calloc(1, short *); | ^~~~~ read_abatch.c:5338:36: error: expected expression before ‘short’ 5338 | my_CEL->outliers_x = Calloc(1, short *); | ^~~~~ read_abatch.c:5339:36: error: expected expression before ‘short’ 5339 | my_CEL->outliers_y = Calloc(1, short *); | ^~~~~ read_abatch.c:5341:51: error: expected expression before ‘int’ 5341 | my_CEL->nmasks = Calloc(my_CEL->multichannel, int); | ^~~ read_abatch.c:5342:54: error: expected expression before ‘int’ 5342 | my_CEL->noutliers = Calloc(my_CEL->multichannel, int); | ^~~ read_abatch.c:5343:52: error: expected expression before ‘short’ 5343 | my_CEL->masks_x = Calloc(my_CEL->multichannel, short *); | ^~~~~ read_abatch.c:5344:52: error: expected expression before ‘short’ 5344 | my_CEL->masks_y = Calloc(my_CEL->multichannel, short *); | ^~~~~ read_abatch.c:5345:55: error: expected expression before ‘short’ 5345 | my_CEL->outliers_x = Calloc(my_CEL->multichannel, short *); | ^~~~~ read_abatch.c:5346:55: error: expected expression before ‘short’ 5346 | my_CEL->outliers_y = Calloc(my_CEL->multichannel, short *); | ^~~~~ make: *** [/usr/lib64/R/etc/Makeconf:202: read_abatch.o] Error 1 ERROR: compilation failed for package ‘affyio’ * removing ‘/builddir/build/BUILD/R-affyio-1.66.0-build/BUILDROOT/usr/lib64/R/library/affyio’ error: Bad exit status from /var/tmp/rpm-tmp.C1IUPA (%install) Bad exit status from /var/tmp/rpm-tmp.C1IUPA (%install) RPM build errors: Child return code was: 1 EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M 5751d33062f245b28c139a60ac1eeddd -D /var/lib/mock/f43-build-side-110352-58920067-6569255/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv._01or5v5:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin \'--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"\' \'--setenv=PS1= \\s-\\v\\$ \' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c \'/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/R-affyio.spec\'\n', 1)] Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/mockbuild/trace_decorator.py", line 93, in trace result = func(*args, **kw) File "/usr/lib/python3.13/site-packages/mockbuild/util.py", line 610, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (cmd_pretty(command, env), output), child.returncode) mockbuild.exception.Error: Command failed: # /usr/bin/systemd-nspawn -q -M 5751d33062f245b28c139a60ac1eeddd -D /var/lib/mock/f43-build-side-110352-58920067-6569255/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv._01or5v5:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/R-affyio.spec'