Mock Version: 5.6
Mock Version: 5.6
Mock Version: 5.6
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-randomForest.spec'], chrootPath='/var/lib/mock/f41-build-54870595-6530622/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffb7d063c0>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.69sjdk4x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.69sjdk4x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'e7e4b10861194698a45db27157ccf92a', '-D', '/var/lib/mock/f41-build-54870595-6530622/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.69sjdk4x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-randomForest.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1721174400
Wrote: /builddir/build/SRPMS/R-randomForest-4.7.1.1-8.fc41.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-randomForest.spec'], chrootPath='/var/lib/mock/f41-build-54870595-6530622/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffb7d063c0>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.69sjdk4x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.69sjdk4x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd0b8de2824bc40cf8aee5c5768b8059e', '-D', '/var/lib/mock/f41-build-54870595-6530622/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.69sjdk4x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-randomForest.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1721174400
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.K2ok4X
+ umask 022
+ cd /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ test -d /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ /usr/bin/rm -rf /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/R-randomForest-4.7.1.1-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ptmWyg
+ umask 022
+ cd /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ cd /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ rm -rf randomForest
+ /usr/bin/mkdir -p randomForest
+ cd randomForest
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/randomForest_4.7-1.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.rIijDS
+ umask 022
+ cd /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd randomForest
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Gbw53v
+ umask 022
+ cd /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ '[' /builddir/build/BUILD/R-randomForest-4.7.1.1-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/R-randomForest-4.7.1.1-build/BUILDROOT
++ dirname /builddir/build/BUILD/R-randomForest-4.7.1.1-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ mkdir /builddir/build/BUILD/R-randomForest-4.7.1.1-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd randomForest
+ mkdir -p /builddir/build/BUILD/R-randomForest-4.7.1.1-build/BUILDROOT/usr/lib64/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILD/R-randomForest-4.7.1.1-build/BUILDROOT/usr/lib64/R/library randomForest
* installing *source* package ‘randomForest’ ...
** package ‘randomForest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c classTree.c -o classTree.o
classTree.c: In function ‘predictClassTree’:
classTree.c:453:47: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized]
  453 |                                 k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ?
      |                                               ^
classTree.c:422:22: note: ‘cbestsplit’ was declared here
  422 |     int m, i, j, k, *cbestsplit;
      |                      ^~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c init.c -o init.o
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c regTree.c -o regTree.o
regTree.c: In function ‘predictRegTree’:
regTree.c:393:23: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized]
  393 |         k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ?
      |                       ^
regTree.c:363:20: note: ‘cbestsplit’ was declared here
  363 |   int i, j, k, m, *cbestsplit;
      |                    ^~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c regrf.c -o regrf.o
regrf.c: In function ‘regRF’:
regrf.c:64:15: warning: variable ‘nind’ set but not used [-Wunused-but-set-variable]
   64 |     int *in, *nind, *nodex, *nodexts;
      |               ^~~~
regrf.c:60:55: warning: unused variable ‘ktmp’ [-Wunused-variable]
   60 |     int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
      |                                                       ^~~~
regrf.c:60:49: warning: unused variable ‘last’ [-Wunused-variable]
   60 |     int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
      |                                                 ^~~~
regrf.c:55:66: warning: unused variable ‘xrand’ [-Wunused-variable]
   55 |     double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand,
      |                                                                  ^~~~~
regrf.c:55:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable]
   55 |     double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand,
      |                         ^~~~~~
regrf.c:205:25: warning: ‘ytree’ may be used uninitialized [-Wmaybe-uninitialized]
  205 |                         predictRegTree(xts, ntest, mdim, lDaughter + idx,
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  206 |                                                    rDaughter + idx, nodestatus + idx, ytree,
      |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  207 |                            upper + idx, avnode + idx,
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
  208 |                                                    mbest + idx, treeSize[j], cat, *maxcat, nodexts);
      |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
regrf.c:58:36: note: ‘ytree’ was declared here
   58 |     double *yb, *xtmp, *xb, *ytr, *ytree, *tgini;
      |                                    ^~~~~
regrf.c:205:25: warning: ‘nodexts’ may be used uninitialized [-Wmaybe-uninitialized]
  205 |                         predictRegTree(xts, ntest, mdim, lDaughter + idx,
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  206 |                                                    rDaughter + idx, nodestatus + idx, ytree,
      |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  207 |                            upper + idx, avnode + idx,
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
  208 |                                                    mbest + idx, treeSize[j], cat, *maxcat, nodexts);
      |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
regrf.c:64:30: note: ‘nodexts’ was declared here
   64 |     int *in, *nind, *nodex, *nodexts;
      |                              ^~~~~~~
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rf.c -o rf.o
rf.c: In function ‘classRF’:
rf.c:176:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  176 |     for (n = 0; n < nsample0; ++n)
      |     ^~~
rf.c:180:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  180 |       strata_size = (int  *) S_alloc(nstrata, sizeof(int));
      |       ^~~~~~~~~~~
rf.c:103:4: warning: variable ‘tp’ set but not used [-Wunused-but-set-variable]
  103 |   *tp, *wr, *bestsplitnext, *bestsplit;
      |    ^~
rf.c:98:41: warning: unused variable ‘ktmp’ [-Wunused-variable]
   98 |   int **strata_idx, *strata_size, last, ktmp, nEmpty, ntry;
      |                                         ^~~~
rf.c:98:35: warning: unused variable ‘last’ [-Wunused-variable]
   98 |   int **strata_idx, *strata_size, last, ktmp, nEmpty, ntry;
      |                                   ^~~~
rf.c:97:24: warning: variable ‘nind’ set but not used [-Wunused-but-set-variable]
   97 |   *at, *a, *b, *mind, *nind, *jts, *oobpair, *sampledIndices;
      |                        ^~~~
rf.c:88:9: warning: variable ‘nimp’ set but not used [-Wunused-but-set-variable]
   88 |   mimp, nimp, near, nuse, noutall, nrightall, nrightimpall,
      |         ^~~~
rf.c:88:3: warning: variable ‘mimp’ set but not used [-Wunused-but-set-variable]
   88 |   mimp, nimp, near, nuse, noutall, nrightall, nrightimpall,
      |   ^~~~
rf.c:395:7: warning: ‘oobpair’ may be used uninitialized [-Wmaybe-uninitialized]
  395 |       computeProximity(prox, oobprox, nodex, jin, oobpair, near);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rf.c:97:37: note: ‘oobpair’ was declared here
   97 |   *at, *a, *b, *mind, *nind, *jts, *oobpair, *sampledIndices;
      |                                     ^~~~~~~
rf.c:343:7: warning: ‘nclts’ may be used uninitialized [-Wmaybe-uninitialized]
  343 |       TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1,
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  344 |                    errts + jb*(nclass+1), *labelts, nclts, cut);
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rf.c:92:23: note: ‘nclts’ was declared here
   92 |   *nrightimp, *nout, *nclts, Ntree;
      |                       ^~~~~
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules   -c rfsub.f -o rfsub.o
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c rfutils.c -o rfutils.o
rfutils.c: In function ‘sampleWithoutReplacementWithWeights’:
rfutils.c:346:9: warning: variable ‘sampledIndexCopy’ set but not used [-Wunused-but-set-variable]
  346 |     int sampledIndexCopy;
      |         ^~~~~~~~~~~~~~~~
rfutils.c:344:9: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
  344 |     int first;
      |         ^~~~~
gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o randomForest.so classTree.o init.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILD/R-randomForest-4.7.1.1-build/BUILDROOT/usr/lib64/R/library/00LOCK-randomForest/00new/randomForest/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘randomForest’
    finding HTML links ... done
    MDSplot                                 html  
    classCenter                             html  
    combine                                 html  
    getTree                                 html  
    grow                                    html  
    importance                              html  
    imports85                               html  
    margin                                  html  
    na.roughfix                             html  
    outlier                                 html  
    partialPlot                             html  
    plot.randomForest                       html  
    predict.randomForest                    html  
    randomForest                            html  
    rfImpute                                html  
    rfNews                                  html  
    rfcv                                    html  
    treesize                                html  
    tuneRF                                  html  
    varImpPlot                              html  
    varUsed                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (randomForest)
+ test -d randomForest/src
+ cd randomForest/src
+ rm -f classTree.o init.o regTree.o regrf.o rf.o rfsub.o rfutils.o randomForest.so
+ rm -f /builddir/build/BUILD/R-randomForest-4.7.1.1-build/BUILDROOT/usr/lib64/R/library/R.css
+ /usr/bin/find-debuginfo -j12 --strict-build-id -m -i --build-id-seed 4.7.1.1-8.fc41 --unique-debug-suffix -4.7.1.1-8.fc41.aarch64 --unique-debug-src-base R-randomForest-4.7.1.1-8.fc41.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/R-randomForest-4.7.1.1-build/randomForest
find-debuginfo: starting
Extracting debug info from 1 files
DWARF-compressing 1 files
sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/R-randomForest-4.7.1.1-8.fc41.aarch64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j12
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j12 /builddir/build/BUILD/R-randomForest-4.7.1.1-build/BUILDROOT
Scanned 25 directories and 93 files,
               processed 61 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/R-randomForest-4.7.1.1-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.iXKQyM
+ umask 022
+ cd /builddir/build/BUILD/R-randomForest-4.7.1.1-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd randomForest
+ /usr/bin/R CMD check randomForest
* using log directory ‘/builddir/build/BUILD/R-randomForest-4.7.1.1-build/randomForest/randomForest.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-redhat-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 41 (Forty One)
* using session charset: UTF-8
* checking for file ‘randomForest/DESCRIPTION’ ... OK
* this is package ‘randomForest’ version ‘4.7-1.1’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.20/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.20/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.20/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.20/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.20/data/experiment/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘randomForest’ can be installed ... OK
* used C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* used Fortran compiler: ‘GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking examples ... OK
* checking PDF version of manual ... WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! LaTeX Error: File `inconsolata.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *> 
         
l.326 ^^M
         
!  ==> Fatal error occurred, no output PDF file produced!
* checking PDF version of manual without index ... OK
* DONE
Status: 1 WARNING
See
  ‘/builddir/build/BUILD/R-randomForest-4.7.1.1-build/randomForest/randomForest.Rcheck/00check.log’
for details.
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: R-randomForest-4.7.1.1-8.fc41.aarch64
Provides: R(randomForest) = 4.7.1.1 R-randomForest = 4.7.1.1-8.fc41 R-randomForest(aarch-64) = 4.7.1.1-8.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: R(ABI) = 4.4 R(stats) R-core >= 4.1.0 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH)
Suggests: R(MASS) R(RColorBrewer)
Processing files: R-randomForest-debugsource-4.7.1.1-8.fc41.aarch64
Provides: R-randomForest-debugsource = 4.7.1.1-8.fc41 R-randomForest-debugsource(aarch-64) = 4.7.1.1-8.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-randomForest-debuginfo-4.7.1.1-8.fc41.aarch64
Provides: R-randomForest-debuginfo = 4.7.1.1-8.fc41 R-randomForest-debuginfo(aarch-64) = 4.7.1.1-8.fc41 debuginfo(build-id) = ec87385cea44bc7a71f127d643123e94104440aa
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-randomForest-debugsource(aarch-64) = 4.7.1.1-8.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-randomForest-4.7.1.1-build/BUILDROOT
Wrote: /builddir/build/RPMS/R-randomForest-debuginfo-4.7.1.1-8.fc41.aarch64.rpm
Wrote: /builddir/build/RPMS/R-randomForest-debugsource-4.7.1.1-8.fc41.aarch64.rpm
Wrote: /builddir/build/RPMS/R-randomForest-4.7.1.1-8.fc41.aarch64.rpm
Child return code was: 0