Mock Version: 6.0
Mock Version: 6.0
Mock Version: 6.0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target ppc64le --nodeps /builddir/build/SPECS/ProDy.spec'], chrootPath='/var/lib/mock/f43-build-57054342-6548125/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fffbb245370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd84c32a1e2ba4f239f7a3599b5ecdccd', '-D', '/var/lib/mock/f43-build-57054342-6548125/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target ppc64le --nodeps /builddir/build/SPECS/ProDy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1736985600
Wrote: /builddir/build/SRPMS/ProDy-2.4.1-11.fc43.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target ppc64le --nodeps /builddir/build/SPECS/ProDy.spec'], chrootPath='/var/lib/mock/f43-build-57054342-6548125/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fffbb245370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd55db9b3ff6e416a96d8a1a1aa3257c1', '-D', '/var/lib/mock/f43-build-57054342-6548125/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target ppc64le --nodeps /builddir/build/SPECS/ProDy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1736985600
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.sAk4yB
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ test -d /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ZjW74r
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ rm -rf ProDy-2.4.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd ProDy-2.4.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/Fix-rtbtools-to-permit-numpy-upgrade.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/eigh-evd-when-no-turbo.patch
+ find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';'
+ find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.yX6GdP
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd ProDy-2.4.1
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/pyproject-wheeldir --output /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-buildrequires -r
Handling setuptools from build-system.requires
Requirement satisfied: setuptools
   (installed: setuptools 74.1.3)
Handling wheel from build-system.requires
Requirement not satisfied: wheel
Handling numpy>=1.10 from build-system.requires
Requirement satisfied: numpy>=1.10
   (installed: numpy 2.2.2)
Handling pyparsing from build-system.requires
Requirement satisfied: pyparsing
   (installed: pyparsing 3.1.2)
Handling scipy from build-system.requires
Requirement satisfied: scipy
   (installed: scipy 1.14.1)
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
   (installed: setuptools 74.1.3)
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/ProDy-2.4.1-11.fc43.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target ppc64le --nodeps /builddir/build/SPECS/ProDy.spec'], chrootPath='/var/lib/mock/f43-build-57054342-6548125/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fffbb245370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0094646c44d34f39baebf325fbc510ea', '-D', '/var/lib/mock/f43-build-57054342-6548125/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target ppc64le --nodeps /builddir/build/SPECS/ProDy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1736985600
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.qNhodN
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd ProDy-2.4.1
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/pyproject-wheeldir --output /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-buildrequires -r
Handling setuptools from build-system.requires
Requirement satisfied: setuptools
   (installed: setuptools 74.1.3)
Handling wheel from build-system.requires
Requirement satisfied: wheel
   (installed: wheel 0.45.1)
Handling numpy>=1.10 from build-system.requires
Requirement satisfied: numpy>=1.10
   (installed: numpy 2.2.2)
Handling pyparsing from build-system.requires
Requirement satisfied: pyparsing
   (installed: pyparsing 3.1.2)
Handling scipy from build-system.requires
Requirement satisfied: scipy
   (installed: scipy 1.14.1)
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
   (installed: setuptools 74.1.3)
running egg_info
creating ProDy.egg-info
writing ProDy.egg-info/PKG-INFO
writing dependency_links to ProDy.egg-info/dependency_links.txt
writing entry points to ProDy.egg-info/entry_points.txt
writing requirements to ProDy.egg-info/requires.txt
writing top-level names to ProDy.egg-info/top_level.txt
writing manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'prody/*/*/*.c'
warning: no files found matching 'prody/*/*.cpp'
warning: no files found matching 'prody/utilities/datafiles/*.txt'
adding license file 'LICENSE.rst'
writing manifest file 'ProDy.egg-info/SOURCES.txt'
running dist_info
writing ProDy.egg-info/PKG-INFO
writing dependency_links to ProDy.egg-info/dependency_links.txt
writing entry points to ProDy.egg-info/entry_points.txt
writing requirements to ProDy.egg-info/requires.txt
writing top-level names to ProDy.egg-info/top_level.txt
reading manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'prody/*/*/*.c'
warning: no files found matching 'prody/*/*.cpp'
warning: no files found matching 'prody/utilities/datafiles/*.txt'
adding license file 'LICENSE.rst'
writing manifest file 'ProDy.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/ProDy-2.4.1.dist-info'
Handling numpy>=1.10 from hook generated metadata: Requires-Dist (ProDy)
Requirement satisfied: numpy>=1.10
   (installed: numpy 2.2.2)
Handling biopython from hook generated metadata: Requires-Dist (ProDy)
Requirement satisfied: biopython
   (installed: biopython 1.85)
Handling pyparsing from hook generated metadata: Requires-Dist (ProDy)
Requirement satisfied: pyparsing
   (installed: pyparsing 3.1.2)
Handling scipy from hook generated metadata: Requires-Dist (ProDy)
Requirement satisfied: scipy
   (installed: scipy 1.14.1)
Handling setuptools from hook generated metadata: Requires-Dist (ProDy)
Requirement satisfied: setuptools
   (installed: setuptools 74.1.3)
+ cat /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-buildrequires
+ rm -rfv ProDy-2.4.1.dist-info/
removed 'ProDy-2.4.1.dist-info/entry_points.txt'
removed 'ProDy-2.4.1.dist-info/top_level.txt'
removed 'ProDy-2.4.1.dist-info/METADATA'
removed 'ProDy-2.4.1.dist-info/LICENSE.rst'
removed directory 'ProDy-2.4.1.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/ProDy-2.4.1-11.fc43.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target ppc64le /builddir/build/SPECS/ProDy.spec'], chrootPath='/var/lib/mock/f43-build-57054342-6548125/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fffbb245370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ac6231896e504065b085184fbdb2e842', '-D', '/var/lib/mock/f43-build-57054342-6548125/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8_71z18u:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target ppc64le /builddir/build/SPECS/ProDy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1736985600
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.O7PLKr
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd ProDy-2.4.1
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/pyproject-wheeldir --output /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-buildrequires -r
Handling setuptools from build-system.requires
Requirement satisfied: setuptools
   (installed: setuptools 74.1.3)
Handling wheel from build-system.requires
Requirement satisfied: wheel
   (installed: wheel 0.45.1)
Handling numpy>=1.10 from build-system.requires
Requirement satisfied: numpy>=1.10
   (installed: numpy 2.2.2)
Handling pyparsing from build-system.requires
Requirement satisfied: pyparsing
   (installed: pyparsing 3.1.2)
Handling scipy from build-system.requires
Requirement satisfied: scipy
   (installed: scipy 1.14.1)
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
   (installed: setuptools 74.1.3)
running egg_info
writing ProDy.egg-info/PKG-INFO
writing dependency_links to ProDy.egg-info/dependency_links.txt
writing entry points to ProDy.egg-info/entry_points.txt
writing requirements to ProDy.egg-info/requires.txt
writing top-level names to ProDy.egg-info/top_level.txt
reading manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'prody/*/*/*.c'
warning: no files found matching 'prody/*/*.cpp'
warning: no files found matching 'prody/utilities/datafiles/*.txt'
adding license file 'LICENSE.rst'
writing manifest file 'ProDy.egg-info/SOURCES.txt'
running dist_info
writing ProDy.egg-info/PKG-INFO
writing dependency_links to ProDy.egg-info/dependency_links.txt
writing entry points to ProDy.egg-info/entry_points.txt
writing requirements to ProDy.egg-info/requires.txt
writing top-level names to ProDy.egg-info/top_level.txt
reading manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'prody/*/*/*.c'
warning: no files found matching 'prody/*/*.cpp'
warning: no files found matching 'prody/utilities/datafiles/*.txt'
adding license file 'LICENSE.rst'
writing manifest file 'ProDy.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/ProDy-2.4.1.dist-info'
Handling numpy>=1.10 from hook generated metadata: Requires-Dist (ProDy)
Requirement satisfied: numpy>=1.10
   (installed: numpy 2.2.2)
Handling biopython from hook generated metadata: Requires-Dist (ProDy)
Requirement satisfied: biopython
   (installed: biopython 1.85)
Handling pyparsing from hook generated metadata: Requires-Dist (ProDy)
Requirement satisfied: pyparsing
   (installed: pyparsing 3.1.2)
Handling scipy from hook generated metadata: Requires-Dist (ProDy)
Requirement satisfied: scipy
   (installed: scipy 1.14.1)
Handling setuptools from hook generated metadata: Requires-Dist (ProDy)
Requirement satisfied: setuptools
   (installed: setuptools 74.1.3)
+ cat /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-buildrequires
+ rm -rfv ProDy-2.4.1.dist-info/
removed 'ProDy-2.4.1.dist-info/entry_points.txt'
removed 'ProDy-2.4.1.dist-info/top_level.txt'
removed 'ProDy-2.4.1.dist-info/METADATA'
removed 'ProDy-2.4.1.dist-info/LICENSE.rst'
removed directory 'ProDy-2.4.1.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Xb2Ds2
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd ProDy-2.4.1
+ mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/pyproject-wheeldir
Processing /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  running dist_info
  creating /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-modern-metadata-zwwo7rb0/ProDy.egg-info
  writing /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-modern-metadata-zwwo7rb0/ProDy.egg-info/PKG-INFO
  writing dependency_links to /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-modern-metadata-zwwo7rb0/ProDy.egg-info/dependency_links.txt
  writing entry points to /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-modern-metadata-zwwo7rb0/ProDy.egg-info/entry_points.txt
  writing requirements to /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-modern-metadata-zwwo7rb0/ProDy.egg-info/requires.txt
  writing top-level names to /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-modern-metadata-zwwo7rb0/ProDy.egg-info/top_level.txt
  writing manifest file '/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-modern-metadata-zwwo7rb0/ProDy.egg-info/SOURCES.txt'
  reading manifest file '/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-modern-metadata-zwwo7rb0/ProDy.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'prody/*/*/*.c'
  warning: no files found matching 'prody/*/*.cpp'
  warning: no files found matching 'prody/utilities/datafiles/*.txt'
  adding license file 'LICENSE.rst'
  writing manifest file '/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-modern-metadata-zwwo7rb0/ProDy.egg-info/SOURCES.txt'
  creating '/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-modern-metadata-zwwo7rb0/ProDy-2.4.1.dist-info'
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: ProDy
  Building wheel for ProDy (pyproject.toml): started
  Running command Building wheel for ProDy (pyproject.toml)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-ppc64le-cpython-313
  creating build/lib.linux-ppc64le-cpython-313/prody
  copying prody/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody
  creating build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/acceptor.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/angle.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/atom.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/atomgroup.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/atomic.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/atommap.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/bond.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/chain.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/crossterm.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/dihedral.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/donor.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/fields.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/flags.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/hierview.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/improper.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/nbexclusion.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/pointer.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/residue.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/segment.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/select.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/selection.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  copying prody/atomic/subset.py -> build/lib.linux-ppc64le-cpython-313/prody/atomic
  creating build/lib.linux-ppc64le-cpython-313/prody/database
  copying prody/database/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/database
  copying prody/database/cath.py -> build/lib.linux-ppc64le-cpython-313/prody/database
  copying prody/database/dali.py -> build/lib.linux-ppc64le-cpython-313/prody/database
  copying prody/database/goa.py -> build/lib.linux-ppc64le-cpython-313/prody/database
  copying prody/database/pfam.py -> build/lib.linux-ppc64le-cpython-313/prody/database
  copying prody/database/quartataweb.py -> build/lib.linux-ppc64le-cpython-313/prody/database
  copying prody/database/uniprot.py -> build/lib.linux-ppc64le-cpython-313/prody/database
  creating build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/adaptive.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/analysis.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/anm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/bbenm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/bildfile.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/clustenm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/compare.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/editing.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/entropy.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/essa.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/exanm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/exgnm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/gamma.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/gnm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/heatmapper.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/imanm.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/mechstiff.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/mode.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/modeset.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/nma.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/nmdfile.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/pca.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/perturb.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/plotting.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/rtb.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/sampling.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/signature.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  copying prody/dynamics/vmdfile.py -> build/lib.linux-ppc64le-cpython-313/prody/dynamics
  creating build/lib.linux-ppc64le-cpython-313/prody/ensemble
  copying prody/ensemble/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/ensemble
  copying prody/ensemble/conformation.py -> build/lib.linux-ppc64le-cpython-313/prody/ensemble
  copying prody/ensemble/ensemble.py -> build/lib.linux-ppc64le-cpython-313/prody/ensemble
  copying prody/ensemble/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/ensemble
  copying prody/ensemble/pdbensemble.py -> build/lib.linux-ppc64le-cpython-313/prody/ensemble
  creating build/lib.linux-ppc64le-cpython-313/prody/kdtree
  copying prody/kdtree/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/kdtree
  copying prody/kdtree/kdtree.py -> build/lib.linux-ppc64le-cpython-313/prody/kdtree
  creating build/lib.linux-ppc64le-cpython-313/prody/measure
  copying prody/measure/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/measure
  copying prody/measure/contacts.py -> build/lib.linux-ppc64le-cpython-313/prody/measure
  copying prody/measure/measure.py -> build/lib.linux-ppc64le-cpython-313/prody/measure
  copying prody/measure/transform.py -> build/lib.linux-ppc64le-cpython-313/prody/measure
  creating build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/blastpdb.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/ciffile.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/cifheader.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/compare.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/dssp.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/emdfile.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/fixer.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/header.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/localpdb.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/pdbclusters.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/pdbfile.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/starfile.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/stride.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/waterbridges.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  copying prody/proteins/wwpdb.py -> build/lib.linux-ppc64le-cpython-313/prody/proteins
  creating build/lib.linux-ppc64le-cpython-313/prody/sequence
  copying prody/sequence/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence
  copying prody/sequence/analysis.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence
  copying prody/sequence/msa.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence
  copying prody/sequence/msafile.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence
  copying prody/sequence/plotting.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence
  copying prody/sequence/sequence.py -> build/lib.linux-ppc64le-cpython-313/prody/sequence
  creating build/lib.linux-ppc64le-cpython-313/prody/trajectory
  copying prody/trajectory/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory
  copying prody/trajectory/dcdfile.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory
  copying prody/trajectory/frame.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory
  copying prody/trajectory/psffile.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory
  copying prody/trajectory/trajbase.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory
  copying prody/trajectory/trajectory.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory
  copying prody/trajectory/trajfile.py -> build/lib.linux-ppc64le-cpython-313/prody/trajectory
  creating build/lib.linux-ppc64le-cpython-313/prody/chromatin
  copying prody/chromatin/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin
  copying prody/chromatin/cluster.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin
  copying prody/chromatin/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin
  copying prody/chromatin/hic.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin
  copying prody/chromatin/norm.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin
  copying prody/chromatin/straw.py -> build/lib.linux-ppc64le-cpython-313/prody/chromatin
  creating build/lib.linux-ppc64le-cpython-313/prody/compounds
  copying prody/compounds/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/compounds
  copying prody/compounds/bird.py -> build/lib.linux-ppc64le-cpython-313/prody/compounds
  copying prody/compounds/ccd.py -> build/lib.linux-ppc64le-cpython-313/prody/compounds
  copying prody/compounds/functions.py -> build/lib.linux-ppc64le-cpython-313/prody/compounds
  copying prody/compounds/pdbligands.py -> build/lib.linux-ppc64le-cpython-313/prody/compounds
  creating build/lib.linux-ppc64le-cpython-313/prody/domain_decomposition
  copying prody/domain_decomposition/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/domain_decomposition
  copying prody/domain_decomposition/spectrus.py -> build/lib.linux-ppc64le-cpython-313/prody/domain_decomposition
  creating build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/TreeConstruction.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/catchall.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/checkers.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/drawtools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/laptools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/legacy.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/logger.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/pathtools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/seqtools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/settings.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/doctools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/misctools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  copying prody/utilities/eigtools.py -> build/lib.linux-ppc64le-cpython-313/prody/utilities
  creating build/lib.linux-ppc64le-cpython-313/prody/apps
  copying prody/apps/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/apps
  copying prody/apps/apptools.py -> build/lib.linux-ppc64le-cpython-313/prody/apps
  creating build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  copying prody/apps/prody_apps/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps
  creating build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  copying prody/apps/evol_apps/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps
  creating build/lib.linux-ppc64le-cpython-313/prody/tests
  copying prody/tests/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/apps
  copying prody/tests/apps/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps
  copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps
  copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps
  copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps
  copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps
  copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/apps
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/atomic
  copying prody/tests/atomic/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic
  copying prody/tests/atomic/test_atomic.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic
  copying prody/tests/atomic/test_atommap.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic
  copying prody/tests/atomic/test_fragment.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic
  copying prody/tests/atomic/test_hierview.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic
  copying prody/tests/atomic/test_select.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic
  copying prody/tests/atomic/test_subset.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/atomic
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics
  copying prody/tests/dynamics/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics
  copying prody/tests/dynamics/test_editing.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics
  copying prody/tests/dynamics/test_enms.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics
  copying prody/tests/dynamics/test_pca.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics
  copying prody/tests/dynamics/test_signature.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics
  copying prody/tests/dynamics/test_lda.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble
  copying prody/tests/ensemble/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble
  copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble
  copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble
  copying prody/tests/ensemble/test_functions.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble
  copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/kdtree
  copying prody/tests/kdtree/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/kdtree
  copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/kdtree
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/measure
  copying prody/tests/measure/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/measure
  copying prody/tests/measure/test_contacts.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/measure
  copying prody/tests/measure/test_measure.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/measure
  copying prody/tests/measure/test_transform.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/measure
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/proteins
  copying prody/tests/proteins/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins
  copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins
  copying prody/tests/proteins/test_dssp.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins
  copying prody/tests/proteins/test_header.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins
  copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins
  copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins
  copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins
  copying prody/tests/proteins/test_fixer.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins
  copying prody/tests/proteins/test_waterbridges.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/proteins
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/sequence
  copying prody/tests/sequence/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/sequence
  copying prody/tests/sequence/test_analysis.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/sequence
  copying prody/tests/sequence/test_msa.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/sequence
  copying prody/tests/sequence/test_msafile.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/sequence
  copying prody/tests/sequence/test_sequence.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/sequence
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory
  copying prody/tests/trajectory/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory
  copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory
  copying prody/tests/trajectory/test_frame.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory
  creating build/lib.linux-ppc64le-cpython-313/prody/tests/utilities
  copying prody/tests/utilities/__init__.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/utilities
  copying prody/tests/utilities/test_checkers.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/utilities
  copying prody/tests/utilities/test_misctools.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/utilities
  copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-ppc64le-cpython-313/prody/tests/utilities
  creating build/lib.linux-ppc64le-cpython-313/prody/utilities/datafiles
  copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-ppc64le-cpython-313/prody/utilities/datafiles
  copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-ppc64le-cpython-313/prody/utilities/datafiles
  copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles
  running build_ext
  building 'prody.dynamics.rtbtools' extension
  creating build/temp.linux-ppc64le-cpython-313
  creating build/temp.linux-ppc64le-cpython-313/prody
  creating build/temp.linux-ppc64le-cpython-313/prody/dynamics
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-ppc64le-cpython-313/prody/dynamics/rtbtools.o
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/dynamics/rtbtools.cpython-313-powerpc64le-linux-gnu.so
  building 'prody.dynamics.smtools' extension
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/dynamics/smtools.c -o build/temp.linux-ppc64le-cpython-313/prody/dynamics/smtools.o
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/dynamics/smtools.cpython-313-powerpc64le-linux-gnu.so
  building 'prody.sequence.msatools' extension
  creating build/temp.linux-ppc64le-cpython-313/prody/sequence
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/sequence/msatools.c -o build/temp.linux-ppc64le-cpython-313/prody/sequence/msatools.o
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/sequence/msatools.cpython-313-powerpc64le-linux-gnu.so
  building 'prody.sequence.msaio' extension
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/sequence/msaio.c -o build/temp.linux-ppc64le-cpython-313/prody/sequence/msaio.o
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/sequence/msaio.cpython-313-powerpc64le-linux-gnu.so
  building 'prody.sequence.seqtools' extension
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/sequence/seqtools.c -o build/temp.linux-ppc64le-cpython-313/prody/sequence/seqtools.o
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/sequence/seqtools.cpython-313-powerpc64le-linux-gnu.so
  building 'prody.kdtree._CKDTree' extension
  creating build/temp.linux-ppc64le-cpython-313/prody/kdtree
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/kdtree/KDTree.c -o build/temp.linux-ppc64le-cpython-313/prody/kdtree/KDTree.o
  gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-ppc64le-cpython-313/prody/kdtree/KDTreemodule.o
  gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/kdtree/KDTree.o build/temp.linux-ppc64le-cpython-313/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/kdtree/_CKDTree.cpython-313-powerpc64le-linux-gnu.so
  building 'prody.proteins.ccealign' extension
  creating build/temp.linux-ppc64le-cpython-313/prody/proteins
  creating build/temp.linux-ppc64le-cpython-313/prody/proteins/ccealign
  g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Iprody/utilities/tnt -I/usr/include/python3.13 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-ppc64le-cpython-313/prody/proteins/ccealign/ccealignmodule.o
  In file included from prody/utilities/tnt/tnt.h:41,
                   from prody/proteins/ccealign/ccealignmodule.h:43,
                   from prody/proteins/ccealign/ccealignmodule.cpp:38:
  In member function ‘TNT::Array1D<double>::set_(double*, double*, double const&)’,
      inlined from ‘TNT::Array1D<double>::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6,
      inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26:
  prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
    260 |                 *p = a;
        |                 ~~~^~~
  g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/prody/proteins/ccealign.cpython-313-powerpc64le-linux-gnu.so
  In member function ‘set_’,
      inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6,
      inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26:
  prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
    260 |                 *p = a;
        |                    ^
  installing to build/bdist.linux-ppc64le/wheel
  running install
  running install_lib
  creating build/bdist.linux-ppc64le
  creating build/bdist.linux-ppc64le/wheel
  creating build/bdist.linux-ppc64le/wheel/prody
  copying build/lib.linux-ppc64le-cpython-313/prody/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody
  creating build/bdist.linux-ppc64le/wheel/prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/acceptor.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/angle.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/atom.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/atomgroup.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/atomic.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/atommap.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/bond.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/chain.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/crossterm.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/dihedral.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/donor.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/fields.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/flags.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/functions.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/hierview.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/improper.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/nbexclusion.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/pointer.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/residue.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/segment.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/select.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/selection.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/atomic/subset.py -> build/bdist.linux-ppc64le/wheel/./prody/atomic
  creating build/bdist.linux-ppc64le/wheel/prody/database
  copying build/lib.linux-ppc64le-cpython-313/prody/database/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/database
  copying build/lib.linux-ppc64le-cpython-313/prody/database/cath.py -> build/bdist.linux-ppc64le/wheel/./prody/database
  copying build/lib.linux-ppc64le-cpython-313/prody/database/dali.py -> build/bdist.linux-ppc64le/wheel/./prody/database
  copying build/lib.linux-ppc64le-cpython-313/prody/database/goa.py -> build/bdist.linux-ppc64le/wheel/./prody/database
  copying build/lib.linux-ppc64le-cpython-313/prody/database/pfam.py -> build/bdist.linux-ppc64le/wheel/./prody/database
  copying build/lib.linux-ppc64le-cpython-313/prody/database/quartataweb.py -> build/bdist.linux-ppc64le/wheel/./prody/database
  copying build/lib.linux-ppc64le-cpython-313/prody/database/uniprot.py -> build/bdist.linux-ppc64le/wheel/./prody/database
  creating build/bdist.linux-ppc64le/wheel/prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/adaptive.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/analysis.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/anm.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/bbenm.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/bildfile.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/clustenm.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/compare.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/editing.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/entropy.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/essa.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/exanm.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/exgnm.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/functions.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/gamma.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/gnm.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/heatmapper.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/imanm.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/mechstiff.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/mode.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/modeset.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/nma.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/nmdfile.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/pca.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/perturb.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/plotting.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/rtb.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/sampling.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/signature.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/vmdfile.py -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/rtbtools.cpython-313-powerpc64le-linux-gnu.so -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/dynamics/smtools.cpython-313-powerpc64le-linux-gnu.so -> build/bdist.linux-ppc64le/wheel/./prody/dynamics
  creating build/bdist.linux-ppc64le/wheel/prody/ensemble
  copying build/lib.linux-ppc64le-cpython-313/prody/ensemble/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/ensemble
  copying build/lib.linux-ppc64le-cpython-313/prody/ensemble/conformation.py -> build/bdist.linux-ppc64le/wheel/./prody/ensemble
  copying build/lib.linux-ppc64le-cpython-313/prody/ensemble/ensemble.py -> build/bdist.linux-ppc64le/wheel/./prody/ensemble
  copying build/lib.linux-ppc64le-cpython-313/prody/ensemble/functions.py -> build/bdist.linux-ppc64le/wheel/./prody/ensemble
  copying build/lib.linux-ppc64le-cpython-313/prody/ensemble/pdbensemble.py -> build/bdist.linux-ppc64le/wheel/./prody/ensemble
  creating build/bdist.linux-ppc64le/wheel/prody/kdtree
  copying build/lib.linux-ppc64le-cpython-313/prody/kdtree/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/kdtree
  copying build/lib.linux-ppc64le-cpython-313/prody/kdtree/kdtree.py -> build/bdist.linux-ppc64le/wheel/./prody/kdtree
  copying build/lib.linux-ppc64le-cpython-313/prody/kdtree/_CKDTree.cpython-313-powerpc64le-linux-gnu.so -> build/bdist.linux-ppc64le/wheel/./prody/kdtree
  creating build/bdist.linux-ppc64le/wheel/prody/measure
  copying build/lib.linux-ppc64le-cpython-313/prody/measure/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/measure
  copying build/lib.linux-ppc64le-cpython-313/prody/measure/contacts.py -> build/bdist.linux-ppc64le/wheel/./prody/measure
  copying build/lib.linux-ppc64le-cpython-313/prody/measure/measure.py -> build/bdist.linux-ppc64le/wheel/./prody/measure
  copying build/lib.linux-ppc64le-cpython-313/prody/measure/transform.py -> build/bdist.linux-ppc64le/wheel/./prody/measure
  creating build/bdist.linux-ppc64le/wheel/prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/blastpdb.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/ciffile.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/cifheader.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/compare.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/dssp.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/emdfile.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/fixer.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/functions.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/header.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/localpdb.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/pdbclusters.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/pdbfile.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/starfile.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/stride.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/waterbridges.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/wwpdb.py -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/proteins/ccealign.cpython-313-powerpc64le-linux-gnu.so -> build/bdist.linux-ppc64le/wheel/./prody/proteins
  creating build/bdist.linux-ppc64le/wheel/prody/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/sequence/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/sequence/analysis.py -> build/bdist.linux-ppc64le/wheel/./prody/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/sequence/msa.py -> build/bdist.linux-ppc64le/wheel/./prody/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/sequence/msafile.py -> build/bdist.linux-ppc64le/wheel/./prody/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/sequence/plotting.py -> build/bdist.linux-ppc64le/wheel/./prody/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/sequence/sequence.py -> build/bdist.linux-ppc64le/wheel/./prody/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/sequence/msatools.cpython-313-powerpc64le-linux-gnu.so -> build/bdist.linux-ppc64le/wheel/./prody/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/sequence/msaio.cpython-313-powerpc64le-linux-gnu.so -> build/bdist.linux-ppc64le/wheel/./prody/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/sequence/seqtools.cpython-313-powerpc64le-linux-gnu.so -> build/bdist.linux-ppc64le/wheel/./prody/sequence
  creating build/bdist.linux-ppc64le/wheel/prody/trajectory
  copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/trajectory
  copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/dcdfile.py -> build/bdist.linux-ppc64le/wheel/./prody/trajectory
  copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/frame.py -> build/bdist.linux-ppc64le/wheel/./prody/trajectory
  copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/psffile.py -> build/bdist.linux-ppc64le/wheel/./prody/trajectory
  copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/trajbase.py -> build/bdist.linux-ppc64le/wheel/./prody/trajectory
  copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/trajectory.py -> build/bdist.linux-ppc64le/wheel/./prody/trajectory
  copying build/lib.linux-ppc64le-cpython-313/prody/trajectory/trajfile.py -> build/bdist.linux-ppc64le/wheel/./prody/trajectory
  creating build/bdist.linux-ppc64le/wheel/prody/chromatin
  copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/chromatin
  copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/cluster.py -> build/bdist.linux-ppc64le/wheel/./prody/chromatin
  copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/functions.py -> build/bdist.linux-ppc64le/wheel/./prody/chromatin
  copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/hic.py -> build/bdist.linux-ppc64le/wheel/./prody/chromatin
  copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/norm.py -> build/bdist.linux-ppc64le/wheel/./prody/chromatin
  copying build/lib.linux-ppc64le-cpython-313/prody/chromatin/straw.py -> build/bdist.linux-ppc64le/wheel/./prody/chromatin
  creating build/bdist.linux-ppc64le/wheel/prody/compounds
  copying build/lib.linux-ppc64le-cpython-313/prody/compounds/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/compounds
  copying build/lib.linux-ppc64le-cpython-313/prody/compounds/bird.py -> build/bdist.linux-ppc64le/wheel/./prody/compounds
  copying build/lib.linux-ppc64le-cpython-313/prody/compounds/ccd.py -> build/bdist.linux-ppc64le/wheel/./prody/compounds
  copying build/lib.linux-ppc64le-cpython-313/prody/compounds/functions.py -> build/bdist.linux-ppc64le/wheel/./prody/compounds
  copying build/lib.linux-ppc64le-cpython-313/prody/compounds/pdbligands.py -> build/bdist.linux-ppc64le/wheel/./prody/compounds
  creating build/bdist.linux-ppc64le/wheel/prody/domain_decomposition
  copying build/lib.linux-ppc64le-cpython-313/prody/domain_decomposition/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/domain_decomposition
  copying build/lib.linux-ppc64le-cpython-313/prody/domain_decomposition/spectrus.py -> build/bdist.linux-ppc64le/wheel/./prody/domain_decomposition
  creating build/bdist.linux-ppc64le/wheel/prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/TreeConstruction.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/catchall.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/checkers.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/drawtools.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/laptools.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/legacy.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/logger.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/pathtools.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/seqtools.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/settings.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/doctools.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/misctools.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/eigtools.py -> build/bdist.linux-ppc64le/wheel/./prody/utilities
  creating build/bdist.linux-ppc64le/wheel/prody/utilities/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/datafiles/mod_res_map.dat -> build/bdist.linux-ppc64le/wheel/./prody/utilities/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/utilities/datafiles/saxs_water.dat -> build/bdist.linux-ppc64le/wheel/./prody/utilities/datafiles
  creating build/bdist.linux-ppc64le/wheel/prody/apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/apptools.py -> build/bdist.linux-ppc64le/wheel/./prody/apps
  creating build/bdist.linux-ppc64le/wheel/prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/nmaoptions.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_align.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_anm.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_biomol.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_blast.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_catdcd.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_clustenm.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_contacts.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_eda.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_energy.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_fetch.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_gnm.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_pca.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/prody_select.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/prody_apps/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/prody_apps
  creating build/bdist.linux-ppc64le/wheel/prody/apps/evol_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_coevol.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/evol_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_conserv.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/evol_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_fetch.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/evol_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_filter.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/evol_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_merge.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/evol_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_occupancy.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/evol_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_rankorder.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/evol_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_refine.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/evol_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/evol_search.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/evol_apps
  copying build/lib.linux-ppc64le-cpython-313/prody/apps/evol_apps/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/apps/evol_apps
  creating build/bdist.linux-ppc64le/wheel/prody/tests
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests
  creating build/bdist.linux-ppc64le/wheel/prody/tests/apps
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/apps
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/test_prody_anm.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/apps
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/test_prody_catdcd.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/apps
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/test_prody_examples.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/apps
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/test_prody_gnm.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/apps
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/apps/test_prody_pca.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/apps
  creating build/bdist.linux-ppc64le/wheel/prody/tests/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_atomic.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_atommap.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_fragment.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_hierview.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_select.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/atomic
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/atomic/test_subset.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/atomic
  creating build/bdist.linux-ppc64le/wheel/prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1ejg.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1r19_dssp.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1ubi.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb1ubi_ca.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb2k39_ca.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb2k39_truncated.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb2nwl-opm.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb3hsy.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb3mht.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb3o21.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb3p3w.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb4v8r_h36.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb4v8r_hex.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pdbRTER.pdb -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/anm1ubi_evalues.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/anm1ubi_vectors.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/commute1ubi.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/exanm2nwl_evalues.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/exanm2nwl_vectors.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/gnm1ubi_evalues.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/gnm1ubi_vectors.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/hit1ubi.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_Cys_knot_di.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pca2k39_evalues.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pca2k39_vectors.dat -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/anm1ubi_hessian.coo -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/exanm2nwl_hessian.coo -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/pca2k39_cov.coo -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/rtb2gb1_hessian.coo -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/rtb2gb1_project.coo -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/dcd2k39_truncated.dcd -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/xmlSTI.xml -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_Cys_knot.fasta -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_Cys_knot.slx -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/msa_Cys_knot.sth -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/mmcif_6yfy.cif -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/datafiles/mmcif_6zu5.cif -> build/bdist.linux-ppc64le/wheel/./prody/tests/datafiles
  creating build/bdist.linux-ppc64le/wheel/prody/tests/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/test_editing.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/test_enms.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/test_pca.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/test_signature.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/dynamics
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/dynamics/test_lda.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/dynamics
  creating build/bdist.linux-ppc64le/wheel/prody/tests/ensemble
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/ensemble
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble/test_conformation.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/ensemble
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble/test_ensemble.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/ensemble
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble/test_functions.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/ensemble
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/ensemble/test_pdbensemble.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/ensemble
  creating build/bdist.linux-ppc64le/wheel/prody/tests/kdtree
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/kdtree/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/kdtree
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/kdtree/test_kdtree.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/kdtree
  creating build/bdist.linux-ppc64le/wheel/prody/tests/measure
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/measure/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/measure
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/measure/test_contacts.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/measure
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/measure/test_measure.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/measure
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/measure/test_transform.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/measure
  creating build/bdist.linux-ppc64le/wheel/prody/tests/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_ciffile.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_dssp.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_header.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_localpdb.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_pdbfile.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_wwpdb.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_fixer.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/proteins
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/proteins/test_waterbridges.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/proteins
  creating build/bdist.linux-ppc64le/wheel/prody/tests/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/sequence/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/sequence/test_analysis.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/sequence/test_msa.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/sequence/test_msafile.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/sequence
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/sequence/test_sequence.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/sequence
  creating build/bdist.linux-ppc64le/wheel/prody/tests/trajectory
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/trajectory
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory/test_dcdfile.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/trajectory
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/trajectory/test_frame.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/trajectory
  creating build/bdist.linux-ppc64le/wheel/prody/tests/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/utilities/__init__.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/utilities/test_checkers.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/utilities/test_misctools.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/utilities
  copying build/lib.linux-ppc64le-cpython-313/prody/tests/utilities/test_pathtools.py -> build/bdist.linux-ppc64le/wheel/./prody/tests/utilities
  running install_egg_info
  running egg_info
  writing ProDy.egg-info/PKG-INFO
  writing dependency_links to ProDy.egg-info/dependency_links.txt
  writing entry points to ProDy.egg-info/entry_points.txt
  writing requirements to ProDy.egg-info/requires.txt
  writing top-level names to ProDy.egg-info/top_level.txt
  reading manifest file 'ProDy.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'prody/*/*/*.c'
  warning: no files found matching 'prody/*/*.cpp'
  warning: no files found matching 'prody/utilities/datafiles/*.txt'
  adding license file 'LICENSE.rst'
  writing manifest file 'ProDy.egg-info/SOURCES.txt'
  Copying ProDy.egg-info to build/bdist.linux-ppc64le/wheel/./ProDy-2.4.1-py3.13.egg-info
  running install_scripts
  creating build/bdist.linux-ppc64le/wheel/ProDy-2.4.1.dist-info/WHEEL
  creating '/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir/pip-wheel-ssc1g6o1/.tmp-k309i83h/ProDy-2.4.1-cp313-cp313-linux_ppc64le.whl' and adding 'build/bdist.linux-ppc64le/wheel' to it
  adding 'prody/__init__.py'
  adding 'prody/apps/__init__.py'
  adding 'prody/apps/apptools.py'
  adding 'prody/apps/evol_apps/__init__.py'
  adding 'prody/apps/evol_apps/evol_coevol.py'
  adding 'prody/apps/evol_apps/evol_conserv.py'
  adding 'prody/apps/evol_apps/evol_fetch.py'
  adding 'prody/apps/evol_apps/evol_filter.py'
  adding 'prody/apps/evol_apps/evol_merge.py'
  adding 'prody/apps/evol_apps/evol_occupancy.py'
  adding 'prody/apps/evol_apps/evol_rankorder.py'
  adding 'prody/apps/evol_apps/evol_refine.py'
  adding 'prody/apps/evol_apps/evol_search.py'
  adding 'prody/apps/prody_apps/__init__.py'
  adding 'prody/apps/prody_apps/nmaoptions.py'
  adding 'prody/apps/prody_apps/prody_align.py'
  adding 'prody/apps/prody_apps/prody_anm.py'
  adding 'prody/apps/prody_apps/prody_biomol.py'
  adding 'prody/apps/prody_apps/prody_blast.py'
  adding 'prody/apps/prody_apps/prody_catdcd.py'
  adding 'prody/apps/prody_apps/prody_clustenm.py'
  adding 'prody/apps/prody_apps/prody_contacts.py'
  adding 'prody/apps/prody_apps/prody_eda.py'
  adding 'prody/apps/prody_apps/prody_energy.py'
  adding 'prody/apps/prody_apps/prody_fetch.py'
  adding 'prody/apps/prody_apps/prody_gnm.py'
  adding 'prody/apps/prody_apps/prody_pca.py'
  adding 'prody/apps/prody_apps/prody_select.py'
  adding 'prody/atomic/__init__.py'
  adding 'prody/atomic/acceptor.py'
  adding 'prody/atomic/angle.py'
  adding 'prody/atomic/atom.py'
  adding 'prody/atomic/atomgroup.py'
  adding 'prody/atomic/atomic.py'
  adding 'prody/atomic/atommap.py'
  adding 'prody/atomic/bond.py'
  adding 'prody/atomic/chain.py'
  adding 'prody/atomic/crossterm.py'
  adding 'prody/atomic/dihedral.py'
  adding 'prody/atomic/donor.py'
  adding 'prody/atomic/fields.py'
  adding 'prody/atomic/flags.py'
  adding 'prody/atomic/functions.py'
  adding 'prody/atomic/hierview.py'
  adding 'prody/atomic/improper.py'
  adding 'prody/atomic/nbexclusion.py'
  adding 'prody/atomic/pointer.py'
  adding 'prody/atomic/residue.py'
  adding 'prody/atomic/segment.py'
  adding 'prody/atomic/select.py'
  adding 'prody/atomic/selection.py'
  adding 'prody/atomic/subset.py'
  adding 'prody/chromatin/__init__.py'
  adding 'prody/chromatin/cluster.py'
  adding 'prody/chromatin/functions.py'
  adding 'prody/chromatin/hic.py'
  adding 'prody/chromatin/norm.py'
  adding 'prody/chromatin/straw.py'
  adding 'prody/compounds/__init__.py'
  adding 'prody/compounds/bird.py'
  adding 'prody/compounds/ccd.py'
  adding 'prody/compounds/functions.py'
  adding 'prody/compounds/pdbligands.py'
  adding 'prody/database/__init__.py'
  adding 'prody/database/cath.py'
  adding 'prody/database/dali.py'
  adding 'prody/database/goa.py'
  adding 'prody/database/pfam.py'
  adding 'prody/database/quartataweb.py'
  adding 'prody/database/uniprot.py'
  adding 'prody/domain_decomposition/__init__.py'
  adding 'prody/domain_decomposition/spectrus.py'
  adding 'prody/dynamics/__init__.py'
  adding 'prody/dynamics/adaptive.py'
  adding 'prody/dynamics/analysis.py'
  adding 'prody/dynamics/anm.py'
  adding 'prody/dynamics/bbenm.py'
  adding 'prody/dynamics/bildfile.py'
  adding 'prody/dynamics/clustenm.py'
  adding 'prody/dynamics/compare.py'
  adding 'prody/dynamics/editing.py'
  adding 'prody/dynamics/entropy.py'
  adding 'prody/dynamics/essa.py'
  adding 'prody/dynamics/exanm.py'
  adding 'prody/dynamics/exgnm.py'
  adding 'prody/dynamics/functions.py'
  adding 'prody/dynamics/gamma.py'
  adding 'prody/dynamics/gnm.py'
  adding 'prody/dynamics/heatmapper.py'
  adding 'prody/dynamics/imanm.py'
  adding 'prody/dynamics/mechstiff.py'
  adding 'prody/dynamics/mode.py'
  adding 'prody/dynamics/modeset.py'
  adding 'prody/dynamics/nma.py'
  adding 'prody/dynamics/nmdfile.py'
  adding 'prody/dynamics/pca.py'
  adding 'prody/dynamics/perturb.py'
  adding 'prody/dynamics/plotting.py'
  adding 'prody/dynamics/rtb.py'
  adding 'prody/dynamics/rtbtools.cpython-313-powerpc64le-linux-gnu.so'
  adding 'prody/dynamics/sampling.py'
  adding 'prody/dynamics/signature.py'
  adding 'prody/dynamics/smtools.cpython-313-powerpc64le-linux-gnu.so'
  adding 'prody/dynamics/vmdfile.py'
  adding 'prody/ensemble/__init__.py'
  adding 'prody/ensemble/conformation.py'
  adding 'prody/ensemble/ensemble.py'
  adding 'prody/ensemble/functions.py'
  adding 'prody/ensemble/pdbensemble.py'
  adding 'prody/kdtree/_CKDTree.cpython-313-powerpc64le-linux-gnu.so'
  adding 'prody/kdtree/__init__.py'
  adding 'prody/kdtree/kdtree.py'
  adding 'prody/measure/__init__.py'
  adding 'prody/measure/contacts.py'
  adding 'prody/measure/measure.py'
  adding 'prody/measure/transform.py'
  adding 'prody/proteins/__init__.py'
  adding 'prody/proteins/blastpdb.py'
  adding 'prody/proteins/ccealign.cpython-313-powerpc64le-linux-gnu.so'
  adding 'prody/proteins/ciffile.py'
  adding 'prody/proteins/cifheader.py'
  adding 'prody/proteins/compare.py'
  adding 'prody/proteins/dssp.py'
  adding 'prody/proteins/emdfile.py'
  adding 'prody/proteins/fixer.py'
  adding 'prody/proteins/functions.py'
  adding 'prody/proteins/header.py'
  adding 'prody/proteins/localpdb.py'
  adding 'prody/proteins/pdbclusters.py'
  adding 'prody/proteins/pdbfile.py'
  adding 'prody/proteins/starfile.py'
  adding 'prody/proteins/stride.py'
  adding 'prody/proteins/waterbridges.py'
  adding 'prody/proteins/wwpdb.py'
  adding 'prody/sequence/__init__.py'
  adding 'prody/sequence/analysis.py'
  adding 'prody/sequence/msa.py'
  adding 'prody/sequence/msafile.py'
  adding 'prody/sequence/msaio.cpython-313-powerpc64le-linux-gnu.so'
  adding 'prody/sequence/msatools.cpython-313-powerpc64le-linux-gnu.so'
  adding 'prody/sequence/plotting.py'
  adding 'prody/sequence/seqtools.cpython-313-powerpc64le-linux-gnu.so'
  adding 'prody/sequence/sequence.py'
  adding 'prody/tests/__init__.py'
  adding 'prody/tests/apps/__init__.py'
  adding 'prody/tests/apps/test_prody_anm.py'
  adding 'prody/tests/apps/test_prody_catdcd.py'
  adding 'prody/tests/apps/test_prody_examples.py'
  adding 'prody/tests/apps/test_prody_gnm.py'
  adding 'prody/tests/apps/test_prody_pca.py'
  adding 'prody/tests/atomic/__init__.py'
  adding 'prody/tests/atomic/test_atomic.py'
  adding 'prody/tests/atomic/test_atommap.py'
  adding 'prody/tests/atomic/test_fragment.py'
  adding 'prody/tests/atomic/test_hierview.py'
  adding 'prody/tests/atomic/test_select.py'
  adding 'prody/tests/atomic/test_subset.py'
  adding 'prody/tests/datafiles/__init__.py'
  adding 'prody/tests/datafiles/anm1ubi_evalues.dat'
  adding 'prody/tests/datafiles/anm1ubi_hessian.coo'
  adding 'prody/tests/datafiles/anm1ubi_vectors.dat'
  adding 'prody/tests/datafiles/commute1ubi.dat'
  adding 'prody/tests/datafiles/dcd2k39_truncated.dcd'
  adding 'prody/tests/datafiles/exanm2nwl_evalues.dat'
  adding 'prody/tests/datafiles/exanm2nwl_hessian.coo'
  adding 'prody/tests/datafiles/exanm2nwl_vectors.dat'
  adding 'prody/tests/datafiles/gnm1ubi_evalues.dat'
  adding 'prody/tests/datafiles/gnm1ubi_kirchhoff.coo'
  adding 'prody/tests/datafiles/gnm1ubi_vectors.dat'
  adding 'prody/tests/datafiles/hit1ubi.dat'
  adding 'prody/tests/datafiles/mmcif_6yfy.cif'
  adding 'prody/tests/datafiles/mmcif_6zu5.cif'
  adding 'prody/tests/datafiles/msa_3hsyA_3o21A.fasta'
  adding 'prody/tests/datafiles/msa_Cys_knot.fasta'
  adding 'prody/tests/datafiles/msa_Cys_knot.slx'
  adding 'prody/tests/datafiles/msa_Cys_knot.sth'
  adding 'prody/tests/datafiles/msa_Cys_knot_di.dat'
  adding 'prody/tests/datafiles/msa_Cys_knot_sca.dat'
  adding 'prody/tests/datafiles/pca2k39_cov.coo'
  adding 'prody/tests/datafiles/pca2k39_evalues.dat'
  adding 'prody/tests/datafiles/pca2k39_vectors.dat'
  adding 'prody/tests/datafiles/pdb1ejg.pdb'
  adding 'prody/tests/datafiles/pdb1ejg_oneatom.pdb'
  adding 'prody/tests/datafiles/pdb1r19_dssp.pdb'
  adding 'prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb'
  adding 'prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb'
  adding 'prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb'
  adding 'prody/tests/datafiles/pdb1ubi.pdb'
  adding 'prody/tests/datafiles/pdb1ubi_ca.pdb'
  adding 'prody/tests/datafiles/pdb2gb1_truncated.pdb'
  adding 'prody/tests/datafiles/pdb2k39_ca.pdb'
  adding 'prody/tests/datafiles/pdb2k39_truncated.pdb'
  adding 'prody/tests/datafiles/pdb2nwl-opm.pdb'
  adding 'prody/tests/datafiles/pdb3hsy.pdb'
  adding 'prody/tests/datafiles/pdb3mht.pdb'
  adding 'prody/tests/datafiles/pdb3o21.pdb'
  adding 'prody/tests/datafiles/pdb3p3w.pdb'
  adding 'prody/tests/datafiles/pdb4v8r_h36.pdb'
  adding 'prody/tests/datafiles/pdb4v8r_hex.pdb'
  adding 'prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb'
  adding 'prody/tests/datafiles/pdbRTER.pdb'
  adding 'prody/tests/datafiles/rtb2gb1_hessian.coo'
  adding 'prody/tests/datafiles/rtb2gb1_project.coo'
  adding 'prody/tests/datafiles/xmlSTI.xml'
  adding 'prody/tests/dynamics/__init__.py'
  adding 'prody/tests/dynamics/test_editing.py'
  adding 'prody/tests/dynamics/test_enms.py'
  adding 'prody/tests/dynamics/test_lda.py'
  adding 'prody/tests/dynamics/test_pca.py'
  adding 'prody/tests/dynamics/test_signature.py'
  adding 'prody/tests/ensemble/__init__.py'
  adding 'prody/tests/ensemble/test_conformation.py'
  adding 'prody/tests/ensemble/test_ensemble.py'
  adding 'prody/tests/ensemble/test_functions.py'
  adding 'prody/tests/ensemble/test_pdbensemble.py'
  adding 'prody/tests/kdtree/__init__.py'
  adding 'prody/tests/kdtree/test_kdtree.py'
  adding 'prody/tests/measure/__init__.py'
  adding 'prody/tests/measure/test_contacts.py'
  adding 'prody/tests/measure/test_measure.py'
  adding 'prody/tests/measure/test_transform.py'
  adding 'prody/tests/proteins/__init__.py'
  adding 'prody/tests/proteins/test_ciffile.py'
  adding 'prody/tests/proteins/test_dssp.py'
  adding 'prody/tests/proteins/test_fixer.py'
  adding 'prody/tests/proteins/test_header.py'
  adding 'prody/tests/proteins/test_localpdb.py'
  adding 'prody/tests/proteins/test_pdbfile.py'
  adding 'prody/tests/proteins/test_waterbridges.py'
  adding 'prody/tests/proteins/test_wwpdb.py'
  adding 'prody/tests/sequence/__init__.py'
  adding 'prody/tests/sequence/test_analysis.py'
  adding 'prody/tests/sequence/test_msa.py'
  adding 'prody/tests/sequence/test_msafile.py'
  adding 'prody/tests/sequence/test_sequence.py'
  adding 'prody/tests/trajectory/__init__.py'
  adding 'prody/tests/trajectory/test_dcdfile.py'
  adding 'prody/tests/trajectory/test_frame.py'
  adding 'prody/tests/utilities/__init__.py'
  adding 'prody/tests/utilities/test_checkers.py'
  adding 'prody/tests/utilities/test_misctools.py'
  adding 'prody/tests/utilities/test_pathtools.py'
  adding 'prody/trajectory/__init__.py'
  adding 'prody/trajectory/dcdfile.py'
  adding 'prody/trajectory/frame.py'
  adding 'prody/trajectory/psffile.py'
  adding 'prody/trajectory/trajbase.py'
  adding 'prody/trajectory/trajectory.py'
  adding 'prody/trajectory/trajfile.py'
  adding 'prody/utilities/TreeConstruction.py'
  adding 'prody/utilities/__init__.py'
  adding 'prody/utilities/catchall.py'
  adding 'prody/utilities/checkers.py'
  adding 'prody/utilities/doctools.py'
  adding 'prody/utilities/drawtools.py'
  adding 'prody/utilities/eigtools.py'
  adding 'prody/utilities/laptools.py'
  adding 'prody/utilities/legacy.py'
  adding 'prody/utilities/logger.py'
  adding 'prody/utilities/misctools.py'
  adding 'prody/utilities/pathtools.py'
  adding 'prody/utilities/seqtools.py'
  adding 'prody/utilities/settings.py'
  adding 'prody/utilities/datafiles/mod_res_map.dat'
  adding 'prody/utilities/datafiles/saxs_water.dat'
  adding 'ProDy-2.4.1.dist-info/LICENSE.rst'
  adding 'ProDy-2.4.1.dist-info/METADATA'
  adding 'ProDy-2.4.1.dist-info/WHEEL'
  adding 'ProDy-2.4.1.dist-info/entry_points.txt'
  adding 'ProDy-2.4.1.dist-info/top_level.txt'
  adding 'ProDy-2.4.1.dist-info/RECORD'
  removing build/bdist.linux-ppc64le/wheel
  Building wheel for ProDy (pyproject.toml): finished with status 'done'
  Created wheel for ProDy: filename=ProDy-2.4.1-cp313-cp313-linux_ppc64le.whl size=22140017 sha256=fb3d0d95a31c69189cfe285cfee2096395e5ed0c367263bba8d305287e95e22c
  Stored in directory: /builddir/.cache/pip/wheels/d8/71/f3/57d29ab116ebcb41a64b1ce7f4faf594cb4bf6b6c0a97d068c
Successfully built ProDy
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.tTIwr4
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
++ dirname /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build
+ mkdir /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd ProDy-2.4.1
++ ls /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/pyproject-wheeldir/ProDy-2.4.1-cp313-cp313-linux_ppc64le.whl
++ xargs basename --multiple
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=ProDy==2.4.1
+ '[' -z ProDy==2.4.1 ']'
+ TMPDIR=/builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/pyproject-wheeldir ProDy==2.4.1
Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13)
Looking in links: /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/pyproject-wheeldir
Processing ./pyproject-wheeldir/ProDy-2.4.1-cp313-cp313-linux_ppc64le.whl
Installing collected packages: ProDy
  Creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
  changing mode of /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol to 755
  changing mode of /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody to 755
Successfully installed ProDy-2.4.1
+ '[' -d /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin ']'
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol: updating
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody: updating
+ rm -rfv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/__pycache__
+ rm -f /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' -d /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages ']'
+ site_dirs+=("/usr/lib64/python3.13/site-packages")
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT$site_dir/*.dist-info
+ echo '%ghost /usr/lib64/python3.13/site-packages/ProDy-2.4.1.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --record /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1.dist-info/RECORD --output /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-record
+ rm -fv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1.dist-info/RECORD
removed '/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1.dist-info/RECORD'
+ rm -fv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1.dist-info/REQUESTED
removed '/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1.dist-info/REQUESTED'
++ cut -f1 '-d '
++ wc -l /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-ghost-distinfo
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_FILES_ESCAPE=4.19
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-files --output-modules /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-modules --buildroot /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1-11.fc43.ppc64le-pyproject-record --prefix /usr prody
+ mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ rm -f /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody
+ cd scripts
+ cp -pr ./prody ./python3.13-prody
+ cp -pr ./evol ./python3.13-evol
+ sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.13-prody ./python3.13-evol
+ for i in prody-3.13
+ touch -r ./python3.13-prody prody-3.13
+ install -p prody-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ ln -srf python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody-3.13
+ for i in evol-3.13
+ touch -r ./python3.13-evol evol-3.13
+ install -p evol-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ ln -srf python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol-3.13
+ cd ..
+ /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 2.4.1-11.fc43 --unique-debug-suffix -2.4.1-11.fc43.ppc64le --unique-debug-src-base ProDy-2.4.1-11.fc43.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1
find-debuginfo: starting
Extracting debug info from 7 files
DWARF-compressing 7 files
sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-11.fc43.ppc64le
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8
Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 using python3.13
/usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j8 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_fetch.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_merge.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_filter.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_coevol.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_rankorder.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_conserv.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_occupancy.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_eda.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_search.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_refine.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_fetch.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_blast.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_catdcd.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/nmaoptions.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_energy.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_align.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_pca.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_gnm.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_select.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_anm.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_clustenm.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_biomol.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_contacts.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/angle.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/__pycache__/apptools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/bond.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atom.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atommap.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/dihedral.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/donor.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/chain.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/selection.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/acceptor.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/crossterm.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/functions.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/subset.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/residue.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/segment.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/hierview.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/pointer.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/improper.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/nbexclusion.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/functions.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomic.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/functions.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/norm.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/flags.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/cluster.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/hic.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/straw.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__pycache__/hic.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__pycache__/pdbligands.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__pycache__/ccd.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__pycache__/functions.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/select.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__pycache__/bird.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/goa.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomgroup.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__pycache__/spectrus.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__pycache__/spectrus.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/cath.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/pfam.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/uniprot.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/adaptive.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/quartataweb.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/gamma.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/analysis.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/dali.cpython-313.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_waterbridges.cpython-313.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_sequence.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_msa.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_msafile.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_dcdfile.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_pdbfile.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_misctools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_checkers.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_pathtools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/psffile.cpython-313.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/trajfile.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/doctools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/trajectory.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/trajectory.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__pycache__/trajbase.cpython-313.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/laptools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/eigtools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/drawtools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/seqtools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/pathtools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/checkers.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/settings.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/legacy.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/logger.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/logger.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/TreeConstruction.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/catchall.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_analysis.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__pycache__/misctools.cpython-313.pyc: rewriting with normalized contents
Scanned 89 directories and 723 files,
               processed 236 inodes,
               236 modified (52 replaced + 184 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart
Processing files: python3-ProDy-2.4.1-11.fc43.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.HN4pEo
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd ProDy-2.4.1
+ DOCDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy
+ cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/README.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: ProDy = 0:2.4.1-11.fc43 python-ProDy = 2.4.1-11.fc43 python3-ProDy = 2.4.1-11.fc43 python3-ProDy(ppc-64) = 2.4.1-11.fc43 python3.13-ProDy = 2.4.1-11.fc43 python3.13dist(prody) = 2.4.1 python3dist(prody) = 2.4.1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(biopython) python3.13dist(numpy) >= 1.10 python3.13dist(pyparsing) python3.13dist(scipy) python3.13dist(setuptools)
Obsoletes: python-ProDy < 2.4.1-11.fc43
Processing files: ProDy-debugsource-2.4.1-11.fc43.ppc64le
Provides: ProDy-debugsource = 2.4.1-11.fc43 ProDy-debugsource(ppc-64) = 2.4.1-11.fc43
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-ProDy-debuginfo-2.4.1-11.fc43.ppc64le
Provides: debuginfo(build-id) = 069eaf1b632a7b746656169ab6362c6c57b31c48 debuginfo(build-id) = 0c0b7918636a8c65e55d48cfab98786c6f6a0036 debuginfo(build-id) = 1902a62cffa8189e8f2b5deb1719938bd44d3ab4 debuginfo(build-id) = 5bfddac1b3102b5a49c42b8cfd9b0bf7c9c4a06a debuginfo(build-id) = 76d7dfbc917aa6a6316e3452a750fd8b4783577c debuginfo(build-id) = a2d6b32f62bf55dff38fa05a48bcd117d2b8fcb2 debuginfo(build-id) = af87dd086295c0d0dfa6b4008fdb650cd117ed7a python-ProDy-debuginfo = 2.4.1-11.fc43 python3-ProDy-debuginfo = 2.4.1-11.fc43 python3-ProDy-debuginfo(ppc-64) = 2.4.1-11.fc43 python3.13-ProDy-debuginfo = 2.4.1-11.fc43
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: ProDy-debugsource(ppc-64) = 2.4.1-11.fc43
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
Wrote: /builddir/build/SRPMS/ProDy-2.4.1-11.fc43.src.rpm
Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-11.fc43.ppc64le.rpm
Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-11.fc43.ppc64le.rpm
Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-11.fc43.ppc64le.rpm
Child return code was: 0