Mock Version: 5.9 Mock Version: 5.9 Mock Version: 5.9 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target ppc64le --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/f42-build-55683959-6537406/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._qd7i7so:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._qd7i7so:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '2bcce361fb474680b1bc64a3c7a74fbd', '-D', '/var/lib/mock/f42-build-55683959-6537406/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._qd7i7so:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target ppc64le --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1724198400 Wrote: /builddir/build/SRPMS/libsbml-5.20.4-1.fc42.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target ppc64le --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/f42-build-55683959-6537406/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._qd7i7so:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._qd7i7so:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd92c5272419040f1b4848e9684959cd9', '-D', '/var/lib/mock/f42-build-55683959-6537406/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._qd7i7so:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target ppc64le --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1724198400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.3jQZkn + umask 022 + cd /builddir/build/BUILD/libsbml-5.20.4-build + test -d /builddir/build/BUILD/libsbml-5.20.4-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libsbml-5.20.4-build + /usr/bin/rm -rf /builddir/build/BUILD/libsbml-5.20.4-build + /usr/bin/mkdir -p /builddir/build/BUILD/libsbml-5.20.4-build + /usr/bin/mkdir -p /builddir/build/BUILD/libsbml-5.20.4-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wU1bY9 + umask 022 + cd /builddir/build/BUILD/libsbml-5.20.4-build + cd /builddir/build/BUILD/libsbml-5.20.4-build + rm -rf libsbml-5.20.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsbml-5.20.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsbml-5.20.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Use-system-minizip-cmake.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-Fix-install-libpaths.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Fix-jsfile-globs.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-cmake-do-not-skip-building-of-static-libs.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find . -type f -name '*.py' -exec /usr/bin/python3 /usr/lib/rpm/redhat/pathfix.py -pn -i /usr/bin/python3 '{}' ';' ./dev/utilities/count-lines-of-code/process_count.py: updating ./dev/utilities/errorTable/writeErrorTable.py: updating ./dev/utilities/sboTree/sbo2cpp.py: updating ./docs/src/filters/doc-filter-c.py: updating ./docs/src/filters/doc-filter-csharp.py: updating ./docs/src/filters/doc-filter-python.py: updating ./docs/src/python-substitutions/ASTNodeList.py: no change ./docs/src/python-substitutions/CVTermList.py: no change ./docs/src/python-substitutions/CompPkgNamespaces.py: no change ./docs/src/python-substitutions/DateList.py: no change ./docs/src/python-substitutions/FbcPkgNamespaces.py: no change ./docs/src/python-substitutions/GroupsPkgNamespaces.py: no change ./docs/src/python-substitutions/LayoutPkgNamespaces.py: no change ./docs/src/python-substitutions/ModelCreatorList.py: no change ./docs/src/python-substitutions/MultiPkgNamespaces.py: no change ./docs/src/python-substitutions/QualPkgNamespaces.py: no change ./docs/src/python-substitutions/SBMLNamespacesList.py: no change ./docs/src/python-substitutions/SBaseList.py: no change ./docs/src/python-substitutions/libsbml.py: no change ./docs/src/python-substitutions/ostream.py: no change ./docs/src/python-substitutions/ostringstream.py: no change ./docs/src/utilities/compare-classes.py: updating ./docs/src/utilities/compare-constants.py: updating ./docs/src/utilities/generate-class-name-list.py: updating ./docs/src/utilities/generate-converters-list.py: updating ./docs/src/utilities/generate-cplusplus-class-names.py: updating ./docs/src/utilities/generate-extensions-summary.py: updating ./docs/src/utilities/generate-pkg-stylesheet.py: updating ./docs/src/utilities/pythondocpreprocessor.py: updating ./docs/src/utilities/split-documentation-classes.py: no change ./examples/python/addCVTerms.py: updating ./examples/python/addCustomValidator.py: updating ./examples/python/addModelHistory.py: updating ./examples/python/add_function_definition.py: updating ./examples/python/addingEvidenceCodes_1.py: updating ./examples/python/addingEvidenceCodes_2.py: updating ./examples/python/appendAnnotation.py: updating ./examples/python/append_to_note.py: updating ./examples/python/arrays/CreateArrays1.py: no change ./examples/python/arrays/CreateArrays2.py: no change ./examples/python/arrays/flattenArrays.py: updating ./examples/python/callExternalValidator.py: updating ./examples/python/comp/flattenModel.py: updating ./examples/python/convertSBML.py: updating ./examples/python/createExampleSBML.py: updating ./examples/python/createSimpleModel.py: updating ./examples/python/distrib/createNormalExample.py: updating ./examples/python/distrib/createStatisticsExample .py: updating ./examples/python/dyn/dyn_example1.py: no change ./examples/python/dyn/dyn_example2.py: no change ./examples/python/echoSBML.py: updating ./examples/python/evaluateCustomMath.py: updating ./examples/python/fbc/convertCobraToFbc.py: updating ./examples/python/fbc/convertFbcToCobra.py: updating ./examples/python/fbc/fbc_example1.py: updating ./examples/python/fbc/print_gene_product_association.py: updating ./examples/python/getAllElementsWithNotes.py: updating ./examples/python/groups/groups_example1.py: updating ./examples/python/groups/print_groups.py: updating ./examples/python/inlineFunctionDefinitions.py: updating ./examples/python/inlineInitialAssignments.py: updating ./examples/python/layout/convertLayout.py: updating ./examples/python/layout/example1-L3.py: updating ./examples/python/layout/example1.py: updating ./examples/python/multi/multi_example1.py: no change ./examples/python/multi/multi_example2.py: no change ./examples/python/multi/multi_example3.py: no change ./examples/python/multi/printMulti.py: no change ./examples/python/printAnnotation.py: updating ./examples/python/printMath.py: updating ./examples/python/printNotes.py: updating ./examples/python/printRegisteredPackages.py: updating ./examples/python/printSBML.py: updating ./examples/python/printUnits.py: updating ./examples/python/printsupported.py: updating ./examples/python/promoteParameters.py: updating ./examples/python/qual/qual_example1.py: updating ./examples/python/readSBML.py: updating ./examples/python/renameSId.py: no change ./examples/python/render/addRenderInformation.py: no change ./examples/python/render/printRenderInformation.py: no change ./examples/python/render/removeRenderInformation.py: no change ./examples/python/replaceOneFD.py: updating ./examples/python/setIdFromNames.py: updating ./examples/python/setNamesFromIds.py: updating ./examples/python/stringInput.py: updating ./examples/python/stripPackage.py: updating ./examples/python/translateMath.py: updating ./examples/python/unsetAnnotation.py: updating ./examples/python/unsetNotes.py: updating ./examples/python/validateSBML.py: updating ./examples/python/validateSBMLWithCallback.py: updating ./src/bindings/python/doc-converter/argparse.py: no change ./src/bindings/python/doc-converter/prettytable.py: updating ./src/bindings/python/doc-converter/rewrite_pydoc.py: updating ./src/bindings/python/doc-converter/test/cases/test_args.py: updating ./src/bindings/python/doc-converter/test/cases/test_read.py: updating ./src/bindings/python/doc-converter/test/cases/test_rewrite.py: updating ./src/bindings/python/doc-converter/test/cases/test_test.py: updating ./src/bindings/python/doc-converter/test/cases/test_write.py: updating ./src/bindings/python/doc-converter/test/run.py: updating ./src/bindings/python/test.py: updating ./src/bindings/python/test/annotation/TestAnnotationCopyAndClone.py: no change ./src/bindings/python/test/annotation/TestCVTerms.py: no change ./src/bindings/python/test/annotation/TestCVTerms_newSetters.py: no change ./src/bindings/python/test/annotation/TestDate_newSetters.py: no change ./src/bindings/python/test/annotation/TestL3ModelHistory.py: no change ./src/bindings/python/test/annotation/TestModelCreator_newSetters.py: no change ./src/bindings/python/test/annotation/TestModelHistory.py: no change ./src/bindings/python/test/annotation/TestModelHistory_newSetters.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotation.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotation2.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotationC.py: no change ./src/bindings/python/test/annotation/TestValidation.py: no change ./src/bindings/python/test/math/TestASTNode.py: no change ./src/bindings/python/test/math/TestL3FormulaParserC.py: no change ./src/bindings/python/test/math/TestMathReadFromFile1.py: no change ./src/bindings/python/test/math/TestMathReadFromFile2.py: no change ./src/bindings/python/test/math/TestReadMathML.py: no change ./src/bindings/python/test/math/TestValidASTNode.py: no change ./src/bindings/python/test/math/TestWriteMathML.py: no change ./src/bindings/python/test/sbml/TestAlgebraicRule.py: no change ./src/bindings/python/test/sbml/TestAncestor.py: no change ./src/bindings/python/test/sbml/TestAssignmentRule.py: no change ./src/bindings/python/test/sbml/TestCompartment.py: no change ./src/bindings/python/test/sbml/TestCompartmentType.py: no change ./src/bindings/python/test/sbml/TestCompartmentType_newSetters.py: no change ./src/bindings/python/test/sbml/TestCompartmentVolumeRule.py: no change ./src/bindings/python/test/sbml/TestCompartment_newSetters.py: no change ./src/bindings/python/test/sbml/TestConsistencyChecks.py: no change ./src/bindings/python/test/sbml/TestConstraint.py: no change ./src/bindings/python/test/sbml/TestConstraint_newSetters.py: no change ./src/bindings/python/test/sbml/TestCopyAndClone.py: no change ./src/bindings/python/test/sbml/TestDelay.py: no change ./src/bindings/python/test/sbml/TestEvent.py: no change ./src/bindings/python/test/sbml/TestEventAssignment.py: no change ./src/bindings/python/test/sbml/TestEventAssignment_newSetters.py: no change ./src/bindings/python/test/sbml/TestEvent_newSetters.py: no change ./src/bindings/python/test/sbml/TestFunctionDefinition.py: no change ./src/bindings/python/test/sbml/TestFunctionDefinition_newSetters.py: no change ./src/bindings/python/test/sbml/TestGetMultipleObjects.py: no change ./src/bindings/python/test/sbml/TestInitialAssignment.py: no change ./src/bindings/python/test/sbml/TestInitialAssignment_newSetters.py: no change ./src/bindings/python/test/sbml/TestInternalConsistencyChecks.py: no change ./src/bindings/python/test/sbml/TestKineticLaw.py: no change ./src/bindings/python/test/sbml/TestKineticLaw_newSetters.py: no change ./src/bindings/python/test/sbml/TestL3Compartment.py: no change ./src/bindings/python/test/sbml/TestL3Event.py: no change ./src/bindings/python/test/sbml/TestL3KineticLaw.py: no change ./src/bindings/python/test/sbml/TestL3LocalParameter.py: no change ./src/bindings/python/test/sbml/TestL3Model.py: no change ./src/bindings/python/test/sbml/TestL3Parameter.py: no change ./src/bindings/python/test/sbml/TestL3Reaction.py: no change ./src/bindings/python/test/sbml/TestL3Species.py: no change ./src/bindings/python/test/sbml/TestL3SpeciesReference.py: no change ./src/bindings/python/test/sbml/TestL3Trigger.py: no change ./src/bindings/python/test/sbml/TestL3Unit.py: no change ./src/bindings/python/test/sbml/TestListOf.py: no change ./src/bindings/python/test/sbml/TestModel.py: no change ./src/bindings/python/test/sbml/TestModel_newSetters.py: no change ./src/bindings/python/test/sbml/TestModifierSpeciesReference.py: no change ./src/bindings/python/test/sbml/TestParameter.py: no change ./src/bindings/python/test/sbml/TestParameterRule.py: no change ./src/bindings/python/test/sbml/TestParameter_newSetters.py: no change ./src/bindings/python/test/sbml/TestPriority.py: no change ./src/bindings/python/test/sbml/TestRateRule.py: no change ./src/bindings/python/test/sbml/TestReaction.py: no change ./src/bindings/python/test/sbml/TestReaction_newSetters.py: no change ./src/bindings/python/test/sbml/TestReadFromFile1.py: no change ./src/bindings/python/test/sbml/TestReadFromFile2.py: no change ./src/bindings/python/test/sbml/TestReadFromFile3.py: no change ./src/bindings/python/test/sbml/TestReadFromFile4.py: no change ./src/bindings/python/test/sbml/TestReadFromFile5.py: no change ./src/bindings/python/test/sbml/TestReadFromFile6.py: no change ./src/bindings/python/test/sbml/TestReadFromFile7.py: no change ./src/bindings/python/test/sbml/TestReadFromFile8.py: no change ./src/bindings/python/test/sbml/TestReadFromFile9.py: no change ./src/bindings/python/test/sbml/TestReadSBML.py: no change ./src/bindings/python/test/sbml/TestRequiredAttributes.py: no change ./src/bindings/python/test/sbml/TestRequiredElements.py: no change ./src/bindings/python/test/sbml/TestRule.py: no change ./src/bindings/python/test/sbml/TestRule_newSetters.py: no change ./src/bindings/python/test/sbml/TestSBMLConstructorException.py: no change ./src/bindings/python/test/sbml/TestSBMLConvert.py: no change ./src/bindings/python/test/sbml/TestSBMLConvertStrict.py: no change ./src/bindings/python/test/sbml/TestSBMLDocument.py: no change ./src/bindings/python/test/sbml/TestSBMLError.py: no change ./src/bindings/python/test/sbml/TestSBMLNamespaces.py: no change ./src/bindings/python/test/sbml/TestSBMLParentObject.py: no change ./src/bindings/python/test/sbml/TestSBase.py: no change ./src/bindings/python/test/sbml/TestSBase_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpecies.py: no change ./src/bindings/python/test/sbml/TestSpeciesConcentrationRule.py: no change ./src/bindings/python/test/sbml/TestSpeciesReference.py: no change ./src/bindings/python/test/sbml/TestSpeciesReference_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpeciesType.py: no change ./src/bindings/python/test/sbml/TestSpeciesType_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpecies_newSetters.py: no change ./src/bindings/python/test/sbml/TestStoichiometryMath.py: no change ./src/bindings/python/test/sbml/TestSyntaxChecker.py: no change ./src/bindings/python/test/sbml/TestTrigger.py: no change ./src/bindings/python/test/sbml/TestUnit.py: no change ./src/bindings/python/test/sbml/TestUnitDefinition.py: no change ./src/bindings/python/test/sbml/TestUnitDefinition_newSetters.py: no change ./src/bindings/python/test/sbml/TestUnitKind.py: no change ./src/bindings/python/test/sbml/TestUnit_newSetters.py: no change ./src/bindings/python/test/sbml/TestWriteL3SBML.py: no change ./src/bindings/python/test/sbml/TestWriteSBML.py: no change ./src/bindings/python/test/xml/TestXMLAttributes.py: no change ./src/bindings/python/test/xml/TestXMLAttributesC.py: no change ./src/bindings/python/test/xml/TestXMLCopyAndClone.py: no change ./src/bindings/python/test/xml/TestXMLError.py: no change ./src/bindings/python/test/xml/TestXMLErrorC.py: no change ./src/bindings/python/test/xml/TestXMLNamespaces.py: no change ./src/bindings/python/test/xml/TestXMLNode.py: no change ./src/bindings/python/test/xml/TestXMLNode_newSetters.py: no change ./src/bindings/python/test/xml/TestXMLOutputStream.py: no change ./src/bindings/python/test/xml/TestXMLToken.py: no change ./src/bindings/python/test/xml/TestXMLToken_newSetters.py: no change ./src/bindings/python/test/xml/TestXMLTriple.py: no change ./src/bindings/swig/argparse.py: no change ./src/bindings/swig/libsbmlutils.py: updating ./src/bindings/swig/swigdoc.py: updating + grep -e 'This file was automatically generated by SWIG' -r -l . + xargs --no-run-if-empty rm -v + sed -r -i 's|(set$PERL_PACKAGE_INSTALL_DIR.*/perl5)/site_perl.*$|\1/vendor_perl)|' src/bindings/perl/CMakeLists.txt + sed -r -i 's|(set$RUBY_PACKAGE_INSTALL_DIR.*/ruby)/site_ruby.*$|\1/vendor_ruby)|' src/bindings/ruby/CMakeLists.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.f4iWnO + umask 022 + cd /builddir/build/BUILD/libsbml-5.20.4-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsbml-5.20.4 + mkdir -p build + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ python3-config --abiflags ++ python3-config --abiflags + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.13 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.13.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_USE_DYNAMIC_LOOKUP:BOOL=ON -DWITH_PERL:BOOL=ON -DPERL_EXECUTABLE:FILEPATH=/usr/bin/perl -DPERL_INCLUDE_PATH:PATH=/usr/lib64/perl5/CORE -DPERL_LIBRARY:FILEPATH=/usr/lib64/libperl.so -DWITH_RUBY:BOOL=ON -DRUBY_SITEARCH_DIR:PATH=/usr/local/lib64/ruby/site_ruby -DRUBY_SITELIB_DIR:PATH=/usr/local/share/ruby/site_ruby -DRUBY_VENDORARCH_DIR:PATH=/usr/lib64/ruby/vendor_ruby -DRUBY_VENDORLIB_DIR:PATH=/usr/share/ruby/vendor_ruby -DRUBY_HAS_VENDOR_RUBY:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CHECK=ON -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "4.3.0") -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Looking for sin in m -- Looking for sin in m - found -- Performing Test LIBXML_LIBXML_TEST -- Performing Test LIBXML_LIBXML_TEST - Success -- LIBXML_LIBXML_TEST = 1 -- Found LIBXML: /usr/lib64/libxml2.so (found version "2.12.8") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Found BZ2: /usr/lib64/libbz2.so (found version "1.0.8") -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Checking for module 'minizip' -- Found minizip, version 4.0.7 -- Performing Test CHECK_CHECK_TEST -- Performing Test CHECK_CHECK_TEST - Success -- Found CHECK: /usr/lib64/libcheck.so (found version "0.2") -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found PythonInterp: /usr/bin/python3 (found version "3.13.1") -- Found Perl: /usr/bin/perl (found version "5.40.0") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.40.0") -- Found PythonLibs: /usr/lib64/libpython3.13.so (found version "3.13.1") -- Found Ruby: /usr/bin/ruby (found suitable version "3.3.6", minimum required is "1.8.0") -- ---------------------------------------------------------------------- libSBML version 5.20.4 ---------------------------------------------------------------------- More information and the latest version are available online at https://sbml.org/software/libsbml/ Please report problems using the issue tracker at https://github.com/sbmlteam/libsbml/issues To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'd92c5272419040f1b4848e9684959cd9' host type = Linux host operating system = Linux 6.11.8-300.fc41.ppc64le host CPU architecture = ppc64le General build flags: CC = /usr/bin/gcc CXX = /usr/bin/g++ CPPFLAGS = -DLINUX CFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 4.3.0) -- Using Python = /usr/bin/python3 -- Using Perl = /usr/bin/perl -- Using Ruby = -- Using R = /usr/bin/R -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'arrays' package = OFF -- SBML 'comp' package = ON -- SBML 'distrib' package = OFF -- SBML 'dyn' package = OFF -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- SBML 'req' package = OFF -- SBML 'spatial' package = OFF -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done (9.3s) -- Generating done (0.7s) -- Build files have been written to: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_SKIP_INSTALL_RPATH CSHARP_COMPILER INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR + /usr/bin/make -O -j8 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/cmake -S/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 -B/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make: Entering 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:401:3: note: in expansion of macro ‘COMP_CREATE_NS’ 401 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:538:3: note: in expansion of macro ‘COMP_CREATE_NS’ 538 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.h:72, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro ‘COMP_CREATE_NS’ 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedElement* CompSBasePlugin::createReplacedElement()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:374:3: note: in expansion of macro ‘COMP_CREATE_NS’ 374 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedBy* CompSBasePlugin::createReplacedBy()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:444:3: note: in expansion of macro ‘COMP_CREATE_NS’ 444 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::createListOfReplacedElements()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:551:5: note: in expansion of macro ‘COMP_CREATE_NS’ 551 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Submodel* CompModelPlugin::createSubmodel()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp:314:3: note: in expansion of macro ‘COMP_CREATE_NS’ 314 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Port* CompModelPlugin::createPort()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp:451:3: note: in expansion of macro ‘COMP_CREATE_NS’ 451 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Deletion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Submodel* CompModelPlugin::createSubmodel()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp:314:3: note: in expansion of macro ‘COMP_CREATE_NS’ 314 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Port* CompModelPlugin::createPort()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.cpp:451:3: note: in expansion of macro ‘COMP_CREATE_NS’ 451 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual SBase* ListOfDeletions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro ‘COMP_CREATE_NS’ 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:401:3: note: in expansion of macro ‘COMP_CREATE_NS’ 401 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:538:3: note: in expansion of macro ‘COMP_CREATE_NS’ 538 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.h:72, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro ‘COMP_CREATE_NS’ 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedElement* CompSBasePlugin::createReplacedElement()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:374:3: note: in expansion of macro ‘COMP_CREATE_NS’ 374 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedBy* CompSBasePlugin::createReplacedBy()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:444:3: note: in expansion of macro ‘COMP_CREATE_NS’ 444 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::createListOfReplacedElements()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:551:5: note: in expansion of macro ‘COMP_CREATE_NS’ 551 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function ‘virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function ‘virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Deletion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual SBase* ListOfPorts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function ‘virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro ‘COMP_CREATE_NS’ 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Port.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual SBase* ListOfDeletions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro ‘COMP_CREATE_NS’ 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ReplacedBy.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function ‘virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function ‘virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ReplacedElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual SBase* ListOfPorts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function ‘virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro ‘COMP_CREATE_NS’ 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 1%] Swig Ruby source cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/ruby/../swig/ -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/ruby -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include -c++ -ruby -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby/libsbml_wrap.cpp /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/ruby/libsbml.i make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/ruby/../swig/render-package.i:118: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/ruby/../swig/render-package.i:118: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/ruby/../swig/render-package.i:119: Warning 801: Wrong class name (corrected to `Int_array') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/ruby/../swig/render-package.i:119: Warning 801: Wrong class name (corrected to `Int_array') make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Built target binding_ruby_swig make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 0%] Swig: R Bindings cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r" -DBIN_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r" -DSRC_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DLIBSBML_REMOVE_WRAPPERS=OFF -P /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r/swig-binding.cmake cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML.R" -P /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r/patch-swig-file.cmake -- Patched libSBML.R cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libsbml_wrap.cpp" -P /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r/patch-swig-file.cmake -- Patched libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLInputStream.h:241: Warning 314: 'next' is a R keyword, renaming to '_next' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Built target binding_r_swig make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 0%] Swig Perl bindings source cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl && /usr/bin/python3 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py --language perl --top /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 --master /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/libsbml.i --output /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl/LibSBML.pod --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/ -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include -c++ -perl5 -proxy -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl/LibSBML_wrap.cpp /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/LibSBML.i make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:447: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+?)\*/', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:502: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('/\*\*(\s+\*)+', r'/** \n *', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:506: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('\*/', r'* @internal\n */', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:851: SyntaxWarning: invalid escape sequence '\W' p = re.compile('(\W+)(\w+?)::(\w+\s*$[^)]*?$)') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:994: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link\s*\*?\s+(\w+)?#(\w+)\s*\*?\s+(\w+)\s*@endlink') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1010: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s*\*\s+@par(\s)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1015: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@if|@ifnot)[\s*]+(\w+)[\s*]+(.+?)((@else)\s+(.+?))?@endif', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1024: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1026: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^((?!\s+\Z)\s+)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1028: SyntaxWarning: invalid escape sequence '\Z' p = re.compile('^(?!\Z)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1041: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@section\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1043: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1045: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsubsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1051: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+html+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1053: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+latex+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1075: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1077: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1079: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1085: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@li\s+.*?)(\s+)(\*/|

\s+\*\s+(?!@li\s))', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1090: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@deprecated\s)((\S|\s)+?)(

|\*/)', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1111: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s+\*\s+@', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1114: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*\s*

', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1116: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*?\s*

((\s+\*)+\s+

)+', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1119: SyntaxWarning: invalid escape sequence '\s' p = re.compile('

([\s*]*

)+', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1142: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@ref\s+\*?\s*(\w+)', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1227: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+\w+)::', r'\1#', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1235: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+)([\w:.]+)$', r'\1#\2(', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1254: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link([\s/*]+[\w\s,.:#()*]+[\s/*]*[\w():#]+[\s/*]*)@endlink', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1284: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@par(\s)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1430: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+)(\S+?)::(\w+\s*)(\([^)]*?$)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1432: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@see\s+)(\w+\s*)($[^)]*?$)') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1452: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s+(\S*\s*)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1456: SyntaxWarning: invalid escape sequence '\S' p = re.compile('^[ \t]+(\S)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1472: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1474: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1476: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1I<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1743: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@copy(details|doc)\s+(\w+)') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1755: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@htmlinclude\s+(\*\s+)*([-\w."\']+)', re.DOTALL) #' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1760: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*)[ \t]+\*[ \t]*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1762: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*[ \t]*)\n[ \t]*\*[ \t]*\n[ \t]*\*[ \t]*@li', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig/swigdoc.py:1167: DeprecationWarning: 'count' is passed as positional argument return re.sub(r'', '', docstring, re.DOTALL|re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLInputStream.h:241: Warning 314: 'next' is a perl keyword /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBase.h:816: Warning 509: Overloaded method SBase::getAncestorOfType(int,std::string const &) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBase.h:864: Warning 509: as it is shadowed by SBase::getAncestorOfType(int,std::string const) const. /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:344: Warning 509: Overloaded method GraphicalPrimitive2D::setFillRule(FillRule_t const) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:328: Warning 509: as it is shadowed by GraphicalPrimitive2D::setFillRule(GraphicalPrimitive2D::FILL_RULE). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.h:389: Warning 509: Overloaded method GradientBase::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.h:373: Warning 509: as it is shadowed by GradientBase::setSpreadMethod(GradientBase::SPREADMETHOD). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Text.h:448: Warning 509: Overloaded method Text::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Text.h:444: Warning 509: as it is shadowed by Text::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Text.h:486: Warning 509: Overloaded method Text::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Text.h:481: Warning 509: as it is shadowed by Text::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Text.h:522: Warning 509: Overloaded method Text::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Text.h:517: Warning 509: as it is shadowed by Text::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Text.h:559: Warning 509: Overloaded method Text::setVTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Text.h:554: Warning 509: as it is shadowed by Text::setVTextAnchor(VTextAnchor_t const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:537: Warning 509: Overloaded method RenderGroup::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:533: Warning 509: as it is shadowed by RenderGroup::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:575: Warning 509: Overloaded method RenderGroup::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:570: Warning 509: as it is shadowed by RenderGroup::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:612: Warning 509: Overloaded method RenderGroup::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:607: Warning 509: as it is shadowed by RenderGroup::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:684: Warning 509: Overloaded method RenderGroup::setVTextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:644: Warning 509: as it is shadowed by RenderGroup::setVTextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:687: Warning 509: Overloaded method RenderGroup::setVtextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:648: Warning 509: as it is shadowed by RenderGroup::setVtextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:915: Warning 509: Overloaded method DefaultValues::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:900: Warning 509: as it is shadowed by DefaultValues::setSpreadMethod(GradientBase::SPREADMETHOD const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:1146: Warning 509: Overloaded method DefaultValues::setFillRule(FillRule_t) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:1130: Warning 509: as it is shadowed by DefaultValues::setFillRule(GraphicalPrimitive2D::FILL_RULE const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:1266: Warning 509: Overloaded method DefaultValues::setFontWeight(FontWeight_t) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:1250: Warning 509: as it is shadowed by DefaultValues::setFontWeight(Text::FONT_WEIGHT const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:1314: Warning 509: Overloaded method DefaultValues::setFontStyle(FontStyle_t) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:1298: Warning 509: as it is shadowed by DefaultValues::setFontStyle(Text::FONT_STYLE const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:1362: Warning 509: Overloaded method DefaultValues::setTextAnchor(HTextAnchor_t) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:1346: Warning 509: as it is shadowed by DefaultValues::setTextAnchor(Text::TEXT_ANCHOR const). /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:1410: Warning 509: Overloaded method DefaultValues::setVTextAnchor(VTextAnchor_t) effectively ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.h:1394: Warning 509: as it is shadowed by DefaultValues::setVTextAnchor(Text::TEXT_ANCHOR const). make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Built target binding_perl_swig make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘SBaseRef* SBaseRef::createSBaseRef()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp:553:5: note: in expansion of macro ‘COMP_CREATE_NS’ 553 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual SBase* SBaseRef::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp:672:7: note: in expansion of macro ‘COMP_CREATE_NS’ 672 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp:683:7: note: in expansion of macro ‘COMP_CREATE_NS’ 683 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -MF 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/CompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ReplacedBy.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/SBMLFileResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Submodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Submodel.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Submodel.cpp: In member function ‘Deletion* Submodel::createDeletion()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Submodel.cpp:498:3: note: in expansion of macro ‘COMP_CREATE_NS’ 498 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/ReplacedElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/SBMLResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘SBaseRef* SBaseRef::createSBaseRef()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp:553:5: note: in expansion of macro ‘COMP_CREATE_NS’ 553 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual SBase* SBaseRef::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp:672:7: note: in expansion of macro ‘COMP_CREATE_NS’ 672 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/SBaseRef.cpp:683:7: note: in expansion of macro ‘COMP_CREATE_NS’ 683 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/SBMLFileResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/SBMLResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Submodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Submodel.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Submodel.cpp: In member function ‘Deletion* Submodel::createDeletion()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/Submodel.cpp:498:3: note: in expansion of macro ‘COMP_CREATE_NS’ 498 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/CompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/CompValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -MF 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function ‘void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro ‘COMP_CREATE_NS’ 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/CompValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function ‘void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro ‘COMP_CREATE_NS’ 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function ‘void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro ‘COMP_CREATE_NS’ 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function ‘void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro ‘COMP_CREATE_NS’ 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:447:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 447 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBasePlugin.h:52, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp: In member function ‘KeyValuePair* FbcSBasePlugin::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:229:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 229 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘FluxBound* FbcModelPlugin::createFluxBound()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:683:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 683 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘Objective* FbcModelPlugin::createObjective()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:944:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 944 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneProduct* FbcModelPlugin::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1120:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1120 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneAssociation* FbcModelPlugin::createGeneAssociation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1323:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1323 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘UserDefinedConstraint* FbcModelPlugin::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1558:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1558 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2388:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 2388 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcAnd* FbcAnd::createAnd()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp:301:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 301 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcOr* FbcAnd::createOr()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp:338:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 338 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘GeneProductRef* FbcAnd::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp:375:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 375 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcAnd* FbcOr::createAnd()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp:313:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 313 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcOr* FbcOr::createOr()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp:350:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 350 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘GeneProductRef* FbcOr::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp:387:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 387 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.h:110, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcAnd* ListOfFbcAssociations::createAnd()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:953:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 953 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcOr* ListOfFbcAssociations::createOr()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:990:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 990 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘GeneProductRef* ListOfFbcAssociations::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1027:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1027 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1123:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1123 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1131:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1131 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1139:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1139 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1147:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1147 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘Association* GeneAssociation::createAssociation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:700:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 700 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxBound.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxBound.h:131, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function ‘virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxBound.cpp:1189:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1189 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.h:98, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘FluxObjective* ListOfFluxObjectives::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1385:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1385 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1481:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1481 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.h:94, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘GeneProduct* ListOfGeneProducts::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1112:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1112 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1208:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1208 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcAnd* GeneProductAssociation::createAnd()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:218:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 218 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcOr* GeneProductAssociation::createOr()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:233:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:248:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 248 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:994:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.h:58, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘KeyValuePair* ListOfKeyValuePairs::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:320:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 320 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual SBase* ListOfKeyValuePairs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:404:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 404 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.h:59, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘UserDefinedConstraintComponent* ListOfUserDefinedConstraintComponents::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:270:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 270 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraintComponents::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:380:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 380 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.h:58, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘UserDefinedConstraint* ListOfUserDefinedConstraints::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:260:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 260 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraints::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:405:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 405 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.h:139, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘FluxObjective* Objective::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp:473:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 473 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘Objective* ListOfObjectives::createObjective()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp:1435:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1435 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘virtual SBase* ListOfObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp:1554:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1554 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:58, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp: In member function ‘UserDefinedConstraintComponent* UserDefinedConstraint::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:544:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 544 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘FluxBound* FbcModelPlugin::createFluxBound()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:683:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 683 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘Objective* FbcModelPlugin::createObjective()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:944:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 944 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneProduct* FbcModelPlugin::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1120:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1120 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneAssociation* FbcModelPlugin::createGeneAssociation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1323:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1323 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘UserDefinedConstraint* FbcModelPlugin::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1558:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1558 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:2388:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 2388 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -MF 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:447:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 447 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/FbcValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBasePlugin.h:52, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp: In member function ‘KeyValuePair* FbcSBasePlugin::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSBasePlugin.cpp:229:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 229 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function ‘Group* GroupsModelPlugin::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:234:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 234 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.h:77, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘Group* ListOfGroups::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp:248:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 248 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘virtual SBase* ListOfGroups::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp:308:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 308 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Group.h:169, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Group.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Group.cpp: In member function ‘Member* Group::createMember()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Group.cpp:450:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 450 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.h:105, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘Member* ListOfMembers::createMember()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp:348:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 348 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘virtual SBase* ListOfMembers::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp:459:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 459 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcAnd* FbcAnd::createAnd()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp:301:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 301 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcOr* FbcAnd::createOr()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp:338:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 338 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘GeneProductRef* FbcAnd::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAnd.cpp:375:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 375 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/GroupsValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcAnd* FbcOr::createAnd()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp:313:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 313 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcOr* FbcOr::createOr()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp:350:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 350 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘GeneProductRef* FbcOr::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcOr.cpp:387:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 387 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.h:110, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcAnd* ListOfFbcAssociations::createAnd()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:953:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 953 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcOr* ListOfFbcAssociations::createOr()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:990:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 990 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘GeneProductRef* ListOfFbcAssociations::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1027:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1027 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1123:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1123 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1131:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1131 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1139:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1139 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1147:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1147 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxBound.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxBound.h:131, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function ‘virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxBound.cpp:1189:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1189 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function ‘Layout* LayoutModelPlugin::createLayout()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:481:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 481 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/BoundingBox.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.h:98, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘FluxObjective* ListOfFluxObjectives::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1385:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1385 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1481:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1481 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/CubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘Association* GeneAssociation::createAssociation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:700:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 700 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘LineSegment* Curve::createLineSegment()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp:362:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 362 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘CubicBezier* Curve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp:377:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 377 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp:645:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 645 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.h:64, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘ReferenceGlyph* GeneralGlyph::createReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:648:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 648 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1175:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1175 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.h:94, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘GeneProduct* ListOfGeneProducts::createGeneProduct()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1112:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1112 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1208:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1208 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcAnd* GeneProductAssociation::createAnd()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:218:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 218 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcOr* GeneProductAssociation::createOr()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:233:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 233 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:248:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 248 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:994:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 994 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/LineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:499:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 499 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:976:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 976 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘CompartmentGlyph* Layout::createCompartmentGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1367:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1367 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘SpeciesGlyph* Layout::createSpeciesGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1383:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1383 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘ReactionGlyph* Layout::createReactionGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1399:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1399 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GeneralGlyph* Layout::createGeneralGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1414:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1414 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘TextGlyph* Layout::createTextGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1430:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1430 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GraphicalObject* Layout::createAdditionalGraphicalObject()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1447:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1447 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfLayouts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-buimake[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/KeyValuePair.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/KeyValuePair.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' ld/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:2028:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2028 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:2200:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2200 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:2352:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2352 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:2501:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2501 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:2650:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2650 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.h:58, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘KeyValuePair* ListOfKeyValuePairs::createKeyValuePair()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:320:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 320 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp: In member function ‘virtual SBase* ListOfKeyValuePairs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfKeyValuePairs.cpp:404:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 404 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.h:59, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘UserDefinedConstraintComponent* ListOfUserDefinedConstraintComponents::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:270:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 270 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraintComponents::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.cpp:380:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 380 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/util/LayoutAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/util/LayoutUtilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/TextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.h:58, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘UserDefinedConstraint* ListOfUserDefinedConstraints::createUserDefinedConstraint()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:260:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 260 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp: In member function ‘virtual SBase* ListOfUserDefinedConstraints::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.cpp:405:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 405 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/LayoutValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.h:139, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘FluxObjective* Objective::createFluxObjective()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp:473:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 473 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘Objective* ListOfObjectives::createObjective()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp:1435:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1435 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘virtual SBase* ListOfObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/Objective.cpp:1554:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1554 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:140:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 140 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:583:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 583 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:51, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function ‘virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:136:8: note: in expansion of macro ‘MULTI_CREATE_NS’ 136 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.h:54, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:132:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:321:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 321 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:348:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 348 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:404:4: note: in expansion of macro ‘MULTI_CREATE_NS’ 404 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:58, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp: In member function ‘UserDefinedConstraintComponent* UserDefinedConstraint::createUserDefinedConstraintComponent()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraint.cpp:544:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 544 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:129:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 129 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:56, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:128:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 128 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:295:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 295 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:58, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:137:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 137 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:480:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 480 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:629:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 629 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:727:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 727 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/CompartmentReference.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/CompartmentReference.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function ‘virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/CompartmentReference.cpp:746:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 746 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:76, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function ‘virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/OutwardBindingSite.h:142, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function ‘virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.h:82, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:450:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 450 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:603:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 603 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:756:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 756 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:909:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 909 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1166:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 1166 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1614:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1614 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1621:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1621 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:744:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 744 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.h:84, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:545:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 545 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* SpeciesFeature::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:758:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 758 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1381:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1381 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1388:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1388 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:591:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 591 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:77, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:428:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 428 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:619:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 619 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1000:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1000 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:75, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:865:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 865 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:75, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:934:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 934 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:118, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:275:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 275 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:487:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 487 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:79, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:859:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 859 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/FbcValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension 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-DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -MF 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 0%] Swig Python source cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 --master /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/pydoc-doxygen.i --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/generate-class-name-list.py /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src > /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/class-list.txt cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/generate-converters-list.py /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/class-list.txt > /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/libsbml-converters.txt cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/rewrite_pydoc.py -f /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/pydoc-doxygen.i -o /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/pydoc-normal.i -i /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../../../docs/src/common-text -g /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../../../docs/src/common-graphics Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-doxygen.i pydoc.i cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/ -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include -DGENERATING_DOCS -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-doxygen.i cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/cmake -E rename libsbml.py libsbml-doxygen.py cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-normal.i pydoc.i cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/ -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-normal.i cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python" -DVERSION="5.20.4" -P /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/add_version.cmake cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python" -DPYTHON_USE_API2_WARNINGS="OFF" -P /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/patch-python.cmake -- Patching Python wrapper make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:447: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+?)\*/', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:502: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('/\*\*(\s+\*)+', r'/** \n *', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:506: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('\*/', r'* @internal\n */', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:851: SyntaxWarning: invalid escape sequence '\W' p = re.compile('(\W+)(\w+?)::(\w+\s*$[^)]*?$)') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:994: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link\s*\*?\s+(\w+)?#(\w+)\s*\*?\s+(\w+)\s*@endlink') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1010: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s*\*\s+@par(\s)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1015: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@if|@ifnot)[\s*]+(\w+)[\s*]+(.+?)((@else)\s+(.+?))?@endif', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1024: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1026: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^((?!\s+\Z)\s+)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1028: SyntaxWarning: invalid escape sequence '\Z' p = re.compile('^(?!\Z)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1041: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@section\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1043: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1045: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsubsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1051: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+html+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1053: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+latex+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1075: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1077: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1079: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1085: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@li\s+.*?)(\s+)(\*/|

\s+\*\s+(?!@li\s))', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1090: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@deprecated\s)((\S|\s)+?)(

|\*/)', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1111: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s+\*\s+@', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1114: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*\s*

', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1116: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*?\s*

((\s+\*)+\s+

)+', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1119: SyntaxWarning: invalid escape sequence '\s' p = re.compile('

([\s*]*

)+', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1142: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@ref\s+\*?\s*(\w+)', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1227: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+\w+)::', r'\1#', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1235: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+)([\w:.]+)$', r'\1#\2(', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1254: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link([\s/*]+[\w\s,.:#()*]+[\s/*]*[\w():#]+[\s/*]*)@endlink', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1284: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@par(\s)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1430: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+)(\S+?)::(\w+\s*)(\([^)]*?$)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1432: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@see\s+)(\w+\s*)($[^)]*?$)') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1452: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s+(\S*\s*)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1456: SyntaxWarning: invalid escape sequence '\S' p = re.compile('^[ \t]+(\S)', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1472: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1474: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1476: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1I<\2>', docstring) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1743: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@copy(details|doc)\s+(\w+)') /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1755: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@htmlinclude\s+(\*\s+)*([-\w."\']+)', re.DOTALL) #' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1760: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*)[ \t]+\*[ \t]*$', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1762: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*[ \t]*)\n[ \t]*\*[ \t]*\n[ \t]*\*[ \t]*@li', re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/swig/libsbmlutils.py:134: SyntaxWarning: invalid escape sequence '\s' match = re.search('(@class|@enum)\s+(\w+)', line) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/swig/libsbmlutils.py:144: SyntaxWarning: invalid escape sequence '\s' match = re.search('%template\s*$([^)]+)$', line) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/swigdoc.py:1167: DeprecationWarning: 'count' is passed as positional argument return re.sub(r'', '', docstring, re.DOTALL|re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/libsbmlutils.py:134: SyntaxWarning: invalid escape sequence '\s' match = re.search('(@class|@enum)\s+(\w+)', line) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/libsbmlutils.py:144: SyntaxWarning: invalid escape sequence '\s' match = re.search('%template\s*$([^)]+)$', line) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/rewrite_pydoc.py:539: SyntaxWarning: invalid escape sequence '$' p = re.compile('(%feature\("docstring"$ \S+ "\n)(.*?)(^";\n\s*)', re.DOTALL|re.MULTILINE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/rewrite_pydoc.py:582: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@if|@ifnot)[\s*]+(\w+)[\s*]+(.+?)((@else)\s+(.+?))?@endif', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/rewrite_pydoc.py:601: SyntaxWarning: invalid escape sequence '\w' p = re.compile('@code({[.\w]+?})?(.+?)@endcode\n', re.DOTALL) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/prettytable.py:74: SyntaxWarning: invalid escape sequence '\[' _re = re.compile("\033\[[0-9;]*m") /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/prettytable.py:800: SyntaxWarning: invalid escape sequence '\{' self.vertical_char = random.choice("~!@#$%^&*()_+|-=\{}[];':\",./;<>?") /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/prettytable.py:801: SyntaxWarning: invalid escape sequence '\{' self.horizontal_char = random.choice("~!@#$%^&*()_+|-=\{}[];':\",./;<>?") /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/prettytable.py:802: SyntaxWarning: invalid escape sequence '\{' self.junction_char = random.choice("~!@#$%^&*()_+|-=\{}[];':\",./;<>?") /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/rewrite_pydoc.py:719: DeprecationWarning: 'count' is passed as positional argument body = re.sub(r'@image\s+latex.+?\n', '', body, re.IGNORECASE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/rewrite_pydoc.py:870: DeprecationWarning: 'count' is passed as positional argument txt_file = re.sub(r'html', 'txt', file_path, re.IGNORECASE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/doc-converter/rewrite_pydoc.py:903: DeprecationWarning: 'count' is passed as positional argument txt_file = re.sub(r'.(png|jpg)', '.txt', file_name, re.IGNORECASE) /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/local.i:870: Warning 404: Duplicate template instantiation of 'ListWrapper< SBMLNamespaces >' with name 'ListWrapperSBMLNamespaces' ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/libsbml.i:120: Warning 404: previous instantiation of 'ListWrapper< SBMLNamespaces >' with name 'SBMLNamespacesList'. /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/local.i:871: Warning 404: Duplicate template instantiation of 'ListWrapper< CVTerm >' with name 'ListWrapperCVTerm' ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/libsbml.i:118: Warning 404: previous instantiation of 'ListWrapper< CVTerm >' with name 'CVTermList'. /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/local.i:872: Warning 404: Duplicate template instantiation of 'ListWrapper< Date >' with name 'ListWrapperDate' ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/libsbml.i:117: Warning 404: previous instantiation of 'ListWrapper< Date >' with name 'DateList'. /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/local.i:873: Warning 404: Duplicate template instantiation of 'ListWrapper< ModelCreator >' with name 'ListWrapperModelCreator' ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/libsbml.i:116: Warning 404: previous instantiation of 'ListWrapper< ModelCreator >' with name 'ModelCreatorList'. /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/local.i:874: Warning 404: Duplicate template instantiation of 'ListWrapper< SBase >' with name 'ListWrapperSBase' ignored, /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/libsbml.i:121: Warning 404: previous instantiation of 'ListWrapper< SBase >' with name 'SBaseList'. /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' Python: Add Version to generated file make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Built target binding_python_swig make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function ‘Group* GroupsModelPlugin::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:234:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 234 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp:835:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 835 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘Transition* QualModelPlugin::createTransition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1013:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1013 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.h:77, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘Group* ListOfGroups::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp:248:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 248 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘virtual SBase* ListOfGroups::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfGroups.cpp:308:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 308 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Group.h:169, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Group.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Group.cpp: In member function ‘Member* Group::createMember()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Group.cpp:450:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 450 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.h:105, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘Member* ListOfMembers::createMember()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp:348:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 348 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘virtual SBase* ListOfMembers::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/ListOfMembers.cpp:459:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 459 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.h:77, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘DefaultTerm* ListOfFunctionTerms::createDefaultTerm()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1068:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1068 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1125:3: note: in expansion of macro ‘QUAL_CREATE_NS’ 1125 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/GroupsValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Input.h:107, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Input.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual SBase* ListOfInputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Output.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Output.h:98, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Output.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual SBase* ListOfOutputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.h:91, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Input* Transition::createInput()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp:456:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 456 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Output* Transition::createOutput()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp:636:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 636 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘FunctionTerm* Transition::createFunctionTerm()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp:790:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 790 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual SBase* ListOfTransitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp:1755:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1755 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/QualValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function ‘Layout* LayoutModelPlugin::createLayout()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:481:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 481 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function ‘LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/BoundingBox.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘LineSegment* Curve::createLineSegment()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp:362:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 362 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘CubicBezier* Curve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp:377:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 377 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.cpp:645:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 645 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function ‘GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.h:64, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘ReferenceGlyph* GeneralGlyph::createReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:648:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 648 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1175:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1175 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘CompartmentGlyph* Layout::createCompartmentGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1367:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1367 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘SpeciesGlyph* Layout::createSpeciesGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1383:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1383 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘ReactionGlyph* Layout::createReactionGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1399:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1399 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GeneralGlyph* Layout::createGeneralGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1414:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1414 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘TextGlyph* Layout::createTextGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1430:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1430 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GraphicalObject* Layout::createAdditionalGraphicalObject()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:1447:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1447 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfLayouts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:2028:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2028 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:2200:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2200 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:2352:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2352 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:2501:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2501 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.cpp:2650:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2650 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function ‘GlobalStyle* GlobalRenderInformation::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:365:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 365 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:499:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 499 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:976:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 976 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/DefaultValues.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.cpp: In member function ‘GradientStop* GradientBase::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.cpp:565:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 565 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/LayoutValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:51, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function ‘virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:136:8: note: in expansion of macro ‘MULTI_CREATE_NS’ 136 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:140:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 140 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:583:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 583 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.h:54, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:132:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:321:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 321 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:348:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 348 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:404:4: note: in expansion of macro ‘MULTI_CREATE_NS’ 404 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.h:77, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘RenderGroup* LineEnding::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:540:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 540 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘BoundingBox* LineEnding::createBoundingBox()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:566:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 566 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual SBase* LineEnding::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:1320:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1320 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:1322:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1322 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘LineEnding::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:1494:47: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 1494 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:1398:16: note: ‘numErrs’ was declared here 1398 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:129:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 129 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:56, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:128:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 128 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:295:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 295 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘ColorDefinition* ListOfColorDefinitions::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:295:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 295 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:367:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:58, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:137:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 137 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:480:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 480 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:629:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 629 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:727:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 727 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘RenderCubicBezier* ListOfCurveElements::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:324:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 324 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:413:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 413 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/CompartmentReference.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/CompartmentReference.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function ‘virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/CompartmentReference.cpp:746:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 746 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.h:75, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Image* ListOfDrawables::createImage()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:261:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 261 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Ellipse* ListOfDrawables::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:289:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 289 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Rectangle* ListOfDrawables::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:317:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 317 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Polygon* ListOfDrawables::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:345:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 345 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderGroup* ListOfDrawables::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:373:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘LineEnding* ListOfDrawables::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:401:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 401 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Text* ListOfDrawables::createText()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:429:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderCurve* ListOfDrawables::createCurve()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:457:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 457 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘virtual SBase* ListOfDrawables::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:517:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 517 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:605:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 605 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:840:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 840 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘ListOfGlobalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:938:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 938 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:896:16: note: ‘numErrs’ was declared here 896 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘GlobalStyle* ListOfGlobalStyles::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:283:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 283 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:348:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 348 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:76, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function ‘virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/OutwardBindingSite.h:142, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function ‘virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.h:82, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:450:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 450 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:603:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 603 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:756:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 756 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:909:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 909 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1166:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 1166 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1614:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1614 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1621:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1621 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:744:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 744 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.h:84, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘GradientStop* ListOfGradientStops::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:304:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 304 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:364:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 364 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘LinearGradient* ListOfGradientDefinitions::createLinearGradient()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:306:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 306 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘RadialGradient* ListOfGradientDefinitions::createRadialGradient()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:335:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 335 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:395:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 395 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.h:84, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:545:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 545 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* SpeciesFeature::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:758:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 758 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1381:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1381 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1388:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1388 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:69, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:591:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 591 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:77, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:428:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 428 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:619:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 619 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1000:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1000 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.h:72, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘LineEnding* ListOfLineEndings::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:295:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 295 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:369:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:75, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:865:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 865 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘LocalStyle* ListOfLocalStyles::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:364:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 364 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:339:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createStyle(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:363:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘DefaultValues* ListOfLocalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:586:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 586 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:790:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 790 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘ListOfLocalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:888:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 888 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:846:16: note: ‘numErrs’ was declared here 846 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp: In constructor ‘Polygon::Polygon(const XMLNode&, unsigned int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderPoint* Polygon::createPoint()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp:421:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 421 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderCubicBezier* Polygon::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp:449:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 449 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:79, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:859:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 859 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:75, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:934:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 934 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:118, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:35: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:275:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 275 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:487:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 487 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderPoint* RenderCurve::createPoint()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp:473:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 473 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderCubicBezier* RenderCurve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp:501:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 501 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘ColorDefinition* RenderInformationBase::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp:734:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 734 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LinearGradient* RenderInformationBase::createLinearGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp:892:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 892 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘RadialGradient* RenderInformationBase::createRadialGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp:920:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 920 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LineEnding* RenderInformationBase::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1078:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1078 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:76, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Image* RenderGroup::createImage()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1110:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1110 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Ellipse* RenderGroup::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1138:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1138 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Rectangle* RenderGroup::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1166:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1166 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Polygon* RenderGroup::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1194:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1194 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderGroup* RenderGroup::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1222:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1222 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘LineEnding* RenderGroup::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1250:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1250 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Text* RenderGroup::createText()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1278:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1278 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderCurve* RenderGroup::createCurve()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1306:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1306 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘void RenderGroup::importOldCurve(const XMLNode&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:2623:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 2623 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp: In member function ‘bool Style::isSetGroup() const’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:564:19: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 564 | return (&mGroup != NULL); | ^ In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.h:73: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp: In member function ‘RenderGroup* Style::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementBySId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:1178:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1178 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementByMetaId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:1210:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1210 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Text.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Transformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util/RenderLayoutConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/CVTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:463:29: warning: ‘%u’ directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:39: In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:463:13: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 6 and 23 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:469:28: warning: ‘T’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:469:13: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:475:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:475:13: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:481:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:481:13: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:487:28: warning: ‘*__snprintf_chkieee128’ output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:487:13: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 3 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:506:30: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:506:15: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:512:30: warning: ‘*__snprintf_chkieee128’ output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:512:15: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 3 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/common/operationReturnValues.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/common/libsbml-version.cpp.o -MF CMakeFiles/sbml.dir/sbml/common/libsbml-version.cpp.o.d -o CMakeFiles/sbml.dir/sbml/common/libsbml-version.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/common/libsbml-version.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/RenderValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/ConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp:835:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 835 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘Transition* QualModelPlugin::createTransition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1013:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1013 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLIdConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLInferUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLLevel1Version1Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.h:77, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘DefaultTerm* ListOfFunctionTerms::createDefaultTerm()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1068:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1068 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1125:3: note: in expansion of macro ‘QUAL_CREATE_NS’ 1125 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLLocalParameterConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRateOfConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Input.h:107, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Input.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual SBase* ListOfInputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLReactionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLStripPackageConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Output.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Output.h:98, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Output.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual SBase* ListOfOutputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRateRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /usr/include/c++/14/string:51, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRuleConverter.h:96, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRuleConverter.cpp:45: In function ‘std::__copy_move::__copy_m(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’, inlined from ‘std::__copy_move_a2(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from ‘std::__copy_move_a1(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from ‘std::__copy_move_a > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from ‘std::copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from ‘std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator > >, AssignmentRule**, AssignmentRule*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**, std::allocator&)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::vector(std::vector > const&)’ at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from ‘reorderRules(std::vector >&)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRuleConverter.cpp:173:42: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: ‘memmove’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.h: In copy constructor ‘ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.h:487:24: warning: ‘ASTBasePlugin::mExtendedMathType’ will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.h:486:34: warning: ‘std::vector ASTBasePlugin::mPkgASTNodeValues’ [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ISBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto 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CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.h:91, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Input* Transition::createInput()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp:456:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 456 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Output* Transition::createOutput()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp:636:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 636 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘FunctionTerm* Transition::createFunctionTerm()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp:790:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 790 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual SBase* ListOfTransitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/Transition.cpp:1755:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1755 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -MF 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd 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-DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 368 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/AlgebraicRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function ‘LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/Constraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Constraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function ‘GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Event.cpp.o -MF CMakeFiles/sbml.dir/sbml/Event.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o cd 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -MF CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/InitialAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function ‘GlobalStyle* GlobalRenderInformation::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:365:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 365 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -MF CMakeFiles/sbml.dir/sbml/ListOf.cpp.o.d -o CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/ListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -MF 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o -MF CMakeFiles/sbml.dir/sbml/Priority.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Priority.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.cpp: In member function ‘GradientStop* GradientBase::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GradientBase.cpp:565:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 565 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -MF CMakeFiles/sbml.dir/sbml/Parameter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.h:77, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘RenderGroup* LineEnding::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:540:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 540 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘BoundingBox* LineEnding::createBoundingBox()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:566:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 566 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual SBase* LineEnding::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:1320:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1320 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:1322:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1322 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘LineEnding::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:1494:47: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 1494 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LineEnding.cpp:1398:16: note: ‘numErrs’ was declared here 1398 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o -MF CMakeFiles/sbml.dir/sbml/Rule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Rule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘ColorDefinition* ListOfColorDefinitions::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:295:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 295 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:367:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Model.cpp.o -MF CMakeFiles/sbml.dir/sbml/Model.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp: In member function ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6447:32: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 4 [-Wformat-overflow=] 6447 | sprintf(newId, "constraint_%u", n); | ^~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6447:20: note: directive argument in the range [0, 4294967294] 6447 | sprintf(newId, "constraint_%u", n); | ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:42: In function ‘*__sprintfieee128’, inlined from ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6447:12: /usr/include/bits/stdio2.h:30:34: note: ‘*__sprintf_chkieee128’ output between 13 and 22 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp: In member function ‘Model::createEventUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6650:27: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 6650 | sprintf(newId, "event_%u", countEvents); | ^~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6650:20: note: directive argument in the range [0, 4294967294] 6650 | sprintf(newId, "event_%u", countEvents); | ^~~~~~~~~~ In function ‘*__sprintfieee128’, inlined from ‘Model::createEventUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6650:12: /usr/include/bits/stdio2.h:30:34: note: ‘*__sprintf_chkieee128’ output between 8 and 17 bytes into a destination of size 12 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘RenderCubicBezier* ListOfCurveElements::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:324:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 324 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:413:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 413 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.h:75, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Image* ListOfDrawables::createImage()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:261:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 261 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Ellipse* ListOfDrawables::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:289:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 289 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Rectangle* ListOfDrawables::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:317:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 317 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Polygon* ListOfDrawables::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:345:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 345 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderGroup* ListOfDrawables::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:373:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘LineEnding* ListOfDrawables::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:401:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 401 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Text* ListOfDrawables::createText()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:429:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderCurve* ListOfDrawables::createCurve()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:457:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 457 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘virtual SBase* ListOfDrawables::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfDrawables.cpp:517:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 517 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLConvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLErrorLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:605:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 605 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:840:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 840 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘ListOfGlobalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:938:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 938 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:896:16: note: ‘numErrs’ was declared here 896 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘GlobalStyle* ListOfGlobalStyles::createGlobalStyle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:283:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 283 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:348:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 348 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘LinearGradient* ListOfGradientDefinitions::createLinearGradient()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:306:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 306 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘RadialGradient* ListOfGradientDefinitions::createRadialGradient()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:335:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 335 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:395:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 395 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.h:84, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘GradientStop* ListOfGradientStops::createGradientStop()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:304:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 304 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:364:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 364 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.h:72, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘LineEnding* ListOfLineEndings::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:295:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 295 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:369:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLDocument.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLTypeCodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘LocalStyle* ListOfLocalStyles::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:364:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 364 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLTransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘DefaultValues* ListOfLocalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:586:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 586 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:790:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 790 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘ListOfLocalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:888:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 888 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:846:16: note: ‘numErrs’ was declared here 846 | unsigned int numErrs; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLVisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createLocalStyle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:339:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createStyle(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:363:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.h:73, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp: In constructor ‘Polygon::Polygon(const XMLNode&, unsigned int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderPoint* Polygon::createPoint()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp:421:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 421 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderCubicBezier* Polygon::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Polygon.cpp:449:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 449 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Rectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderPoint* RenderCurve::createPoint()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp:473:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 473 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderCubicBezier* RenderCurve::createCubicBezier()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderCurve.cpp:501:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 501 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -MF CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SyntaxChecker.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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CMakeFiles/sbml.dir/sbml/Trigger.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Trigger.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building C object src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o -MF CMakeFiles/sbml.dir/sbml/UnitKind.c.o.d -o CMakeFiles/sbml.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/UnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.h:76, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Image* RenderGroup::createImage()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1110:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1110 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Ellipse* RenderGroup::createEllipse()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1138:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1138 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Rectangle* RenderGroup::createRectangle()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1166:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1166 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Polygon* RenderGroup::createPolygon()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1194:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1194 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderGroup* RenderGroup::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1222:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1222 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘LineEnding* RenderGroup::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1250:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1250 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Text* RenderGroup::createText()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1278:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1278 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderCurve* RenderGroup::createCurve()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:1306:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1306 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘void RenderGroup::importOldCurve(const XMLNode&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderGroup.cpp:2623:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 2623 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘ColorDefinition* RenderInformationBase::createColorDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp:734:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 734 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LinearGradient* RenderInformationBase::createLinearGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp:892:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 892 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘RadialGradient* RenderInformationBase::createRadialGradientDefinition()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp:920:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 920 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LineEnding* RenderInformationBase::createLineEnding()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1078:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1078 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp: In member function ‘bool Style::isSetGroup() const’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:564:19: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 564 | return (&mGroup != NULL); | ^ In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:43: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.h:73: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp: In member function ‘RenderGroup* Style::createGroup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementBySId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:1178:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1178 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementByMetaId(const std::string&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:1210:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1210 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::createObject(XMLInputStream&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/DefinitionURLRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static int DefinitionURLRegistry::addDefinitionURL(const std::string&, int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/DefinitionURLRegistry.cpp:82:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 82 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/DefinitionURLRegistry.cpp:106:11: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 106 | if (i == index) | ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o -MF CMakeFiles/sbml.dir/sbml/Unit.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Unit.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o cd 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util/RenderLayoutConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/FormulaParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/L3ParserSettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:463:29: warning: ‘%u’ directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:39: In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:463:13: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 6 and 23 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:469:28: warning: ‘T’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:469:13: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:475:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:475:13: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:481:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:481:13: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:487:28: warning: ‘*__snprintf_chkieee128’ output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:487:13: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 3 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:506:30: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:506:15: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 4 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:512:30: warning: ‘*__snprintf_chkieee128’ output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In function ‘*__snprintfieee128’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/Date.cpp:512:15: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 3 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/ModelCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/common/libsbml-version.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o -MF CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o.d -o CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/FormulaUnitsData.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/common/operationReturnValues.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension 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Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdFilter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/units/UnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/util/Stack.c.o -MF CMakeFiles/sbml.dir/sbml/util/Stack.c.o.d -o CMakeFiles/sbml.dir/sbml/util/Stack.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/Stack.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 47%] Building C object src/CMakeFiles/sbml.dir/sbml/util/StringBuffer.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/util/MathFilter.cpp.o -MF CMakeFiles/sbml.dir/sbml/util/MathFilter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/util/MathFilter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/MathFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 47%] Building C object src/CMakeFiles/sbml.dir/sbml/util/memory.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ExpressionAnalyser.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/RegisterConverters.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/PrefixTransformer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/util.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/util/util.cpp.o -MF CMakeFiles/sbml.dir/sbml/util/util.cpp.o.d -o CMakeFiles/sbml.dir/sbml/util/util.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLConverterRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/IdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/InternalConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLLevel1Version1Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRateOfConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/L2v2CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateRuleConverter.cpp.o.d -o 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src/CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o.d -o 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /usr/include/c++/14/string:51, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRuleConverter.h:96, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRuleConverter.cpp:45: In function ‘std::__copy_move::__copy_m(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’, inlined from ‘std::__copy_move_a2(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from ‘std::__copy_move_a1(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from ‘std::__copy_move_a > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from ‘std::copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from ‘std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator > >, AssignmentRule**, AssignmentRule*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**, std::allocator&)AssignmentRule**’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::vector(std::vector > const&)’ at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from ‘reorderRules(std::vector >&)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/SBMLRuleConverter.cpp:173:42: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: ‘memmove’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/MathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.h: In copy constructor ‘ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.h:487:24: warning: ‘ASTBasePlugin::mExtendedMathType’ will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.h:486:34: warning: ‘std::vector ASTBasePlugin::mPkgASTNodeValues’ [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/ModelingPracticeValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/SBMLExternalValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/AlgebraicRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 368 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/VConstraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/SBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/CompartmentType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/UnitConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/ArgumentsUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/AssignmentRuleOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/EventAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/AssignmentCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/CiElementNot0DComp.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/InitialAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/IdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/FunctionReferredToExists.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/RateRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/KineticLawUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/LambdaMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o cd 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Model.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp: In member function ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6447:32: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 4 [-Wformat-overflow=] 6447 | sprintf(newId, "constraint_%u", n); | ^~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6447:20: note: directive argument in the range [0, 4294967294] 6447 | sprintf(newId, "constraint_%u", n); | ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:42: In function ‘*__sprintfieee128’, inlined from ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6447:12: /usr/include/bits/stdio2.h:30:34: note: ‘*__sprintf_chkieee128’ output between 13 and 22 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp: In member function ‘Model::createEventUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6650:27: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 6650 | sprintf(newId, "event_%u", countEvents); | ^~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6650:20: note: directive argument in the range [0, 4294967294] 6650 | sprintf(newId, "event_%u", countEvents); | ^~~~~~~~~~ In function ‘*__sprintfieee128’, inlined from ‘Model::createEventUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Model.cpp:6650:12: /usr/include/bits/stdio2.h:30:34: note: ‘*__sprintf_chkieee128’ output between 8 and 17 bytes into a destination of size 12 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Rule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/NumberArgsMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o cd 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/usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/PiecewiseValueMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/PowerUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o cd 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/OverDeterminedCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SBMLDocument.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml 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make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/ReportEmptyListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/UniqueIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/SimpleSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 57%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/compress/CompressCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o -MF 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Species.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o -MF CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o.d -o CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/UnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/compress/bzfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/compress/zfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/compress/zipfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLBuffer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common 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-Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/DefinitionURLRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static int DefinitionURLRegistry::addDefinitionURL(const std::string&, int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/DefinitionURLRegistry.cpp:82:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 82 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/DefinitionURLRegistry.cpp:106:11: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 106 | if (i == index) | ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLConstructorException.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/FormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaTokenizer.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/UnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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src/CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLErrorLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3ParserSettings.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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src/CMakeFiles/sbml-static.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/UnitKindList.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdentifierTransformer.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ 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src/CMakeFiles/sbml.dir/sbml/xml/XMLHandler.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/util/MetaIdFilter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/util/Stack.c.o -MF CMakeFiles/sbml-static.dir/sbml/util/Stack.c.o.d -o CMakeFiles/sbml-static.dir/sbml/util/Stack.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/Stack.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 62%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o -MF CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o.d -o CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/StringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 62%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/memory.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/util/memory.c.o -MF CMakeFiles/sbml-static.dir/sbml/util/memory.c.o.d -o CMakeFiles/sbml-static.dir/sbml/util/memory.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/memory.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/util/util.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/util/util.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/util/util.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp: In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:997:44: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-truncation=] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~ In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:973:1: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:997:40: note: directive argument in the range [-2147483647, 2147483647] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:44: In function ‘*__snprintfieee128’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:997:13, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:973:1: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 14 and 60 bytes into a destination of size 17 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/L1CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLToken.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLTokenizer.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLTokenizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLTriple.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/L3v2CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/MathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLHandler.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/LibXMLParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/ModelingPracticeValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/ModelingPracticeValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/ModelingPracticeValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/ModelingPracticeValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/SBMLValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/SBMLExternalValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/VConstraint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src 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src/CMakeFiles/sbml-static.dir/sbml/validator/Validator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/FunctionDefinitionVars.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/IdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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'/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/ReportEmptyListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCycles.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/RateOfCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o cd 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Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/UniqueMetaId.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/compress/CompressCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UnitsBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/compress/OutputCompressor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/bzfstream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/compress/bzfstream.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/bzfstream.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/bzfstream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/compress/bzfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 68%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/compress/zfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 69%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLError.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLLogOverride.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLLogOverride.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLLogOverride.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLLogOverride.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 69%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLErrorLog.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLFileBuffer.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLFileBuffer.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLFileBuffer.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLFileBuffer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 69%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLMemoryBuffer.cpp.o cd 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-c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 69%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNamespaces.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLNamespaces.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLTriple.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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src/CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp: In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:997:44: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-truncation=] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~ In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:973:1: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:997:40: note: directive argument in the range [-2147483647, 2147483647] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:44: In function ‘*__snprintfieee128’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:997:13, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLOutputStream.cpp:973:1: /usr/include/bits/stdio2.h:68:35: note: ‘*__snprintf_chkieee128’ output between 14 and 60 bytes into a destination of size 17 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLNamespaces.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/LibXMLNamespaces.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/LibXMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLTranscode.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLTranscode.cpp.o -MF 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/XMLToken.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLParser.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLParser.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/LibXMLParser.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLParser.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/LibXMLParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 70%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLTokenizer.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o -MF CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o.d -o CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/test/TestCheckConsistency.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o -MF CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o.d -o CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -MF CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o.d -o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -MF CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o.d -o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReadWriteSBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -MF CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o.d -o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -MF CMakeFiles/test_comp_extensions.dir/TestRunner.c.o.d -o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -MF CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void DeletionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Deletion_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void test_comp_deletion_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c:113:10: warning: too many arguments for format [-Wformat-extra-args] 113 | fail("Deletion_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("Deletion_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void test_comp_deletion_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c:144:10: warning: too many arguments for format [-Wformat-extra-args] 144 | fail("Deletion_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Deletion_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void test_comp_deletion_metaid_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c:175:10: warning: too many arguments for format [-Wformat-extra-args] 175 | fail("SBase_setMetaId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestDeletion.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Deletion_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o -MF CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void ExternalModelDefinitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ExternalModelDefinition_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("ExternalModelDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:127:10: warning: too many arguments for format [-Wformat-extra-args] 127 | fail("ExternalModelDefinition_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:148:10: warning: too many arguments for format [-Wformat-extra-args] 148 | fail("ExternalModelDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:158:10: warning: too many arguments for format [-Wformat-extra-args] 158 | fail("ExternalModelDefinition_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_modelRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("ExternalModelDefinition_setModelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:189:10: warning: too many arguments for format [-Wformat-extra-args] 189 | fail("ExternalModelDefinition_unsetModelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_source_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:210:10: warning: too many arguments for format [-Wformat-extra-args] 210 | fail("ExternalModelDefinition_setSource(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:220:10: warning: too many arguments for format [-Wformat-extra-args] 220 | fail("ExternalModelDefinition_unsetSource(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o -MF CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestModelDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function ‘void ModelDefinitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ModelDefinition_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function ‘void test_comp_modelDefinition_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:108:10: warning: too many arguments for format [-Wformat-extra-args] 108 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("Model_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function ‘void test_comp_modelDefinition_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:147:10: warning: too many arguments for format [-Wformat-extra-args] 147 | fail("Model_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o -MF CMakeFiles/test_comp_sbase.dir/TestPort.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestPort.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestPort.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestPort.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestPort.c: In function ‘void PortTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestPort.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Port_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestPort.c: In function ‘void test_comp_port_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestPort.c:113:10: warning: too many arguments for format [-Wformat-extra-args] 113 | fail("Port_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestPort.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("Port_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestPort.c: In function ‘void test_comp_port_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestPort.c:144:10: warning: too many arguments for format [-Wformat-extra-args] 144 | fail("Port_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestPort.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Port_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o -MF CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o.d -o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -MF CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedBy.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedBy.c: In function ‘void ReplacedByTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ReplacedBy_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedBy.c: In function ‘void test_comp_replacedBy_submodelRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("ReplacedBy_setSubmodelRef(...) submodelRef not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:121:10: warning: too many arguments for format [-Wformat-extra-args] 121 | fail("ReplacedBy_unsetSubmodelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -MF CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void ReplacedElementTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ReplacedElement_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void test_comp_replacedElement_submodelRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:115:10: warning: too many arguments for format [-Wformat-extra-args] 115 | fail("ReplacedElement_setSubmodelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("ReplacedElement_unsetSubmodelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void test_comp_replacedElement_deletion_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:146:10: warning: too many arguments for format [-Wformat-extra-args] 146 | fail("ReplacedElement_setDeletion(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:156:10: warning: too many arguments for format [-Wformat-extra-args] 156 | fail("ReplacedElement_unsetDeletion(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void test_comp_replacedElement_conversionFactor_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:177:10: warning: too many arguments for format [-Wformat-extra-args] 177 | fail("ReplacedElement_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("ReplacedElement_unsetConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -MF CMakeFiles/test_comp_sbase.dir/TestRunner.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -MF CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void SBaseRefTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("SBaseRef_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_idRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:119:10: warning: too many arguments for format [-Wformat-extra-args] 119 | fail("SBaseRef_setIdRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:129:10: warning: too many arguments for format [-Wformat-extra-args] 129 | fail("SBaseRef_unsetIdRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_unitRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("SBaseRef_setUnitRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:160:10: warning: too many arguments for format [-Wformat-extra-args] 160 | fail("SBaseRef_unsetUnitRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_metaIdRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:181:10: warning: too many arguments for format [-Wformat-extra-args] 181 | fail("SBaseRef_setMetaIdRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:191:10: warning: too many arguments for format [-Wformat-extra-args] 191 | fail("SBaseRef_unsetMetaIdRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_portRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:212:10: warning: too many arguments for format [-Wformat-extra-args] 212 | fail("SBaseRef_setPortRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:222:10: warning: too many arguments for format [-Wformat-extra-args] 222 | fail("SBaseRef_unsetPortRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_sBaseRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:242:10: warning: too many arguments for format [-Wformat-extra-args] 242 | fail("SBaseRef_setSBaseRef(...) did not make a copy of the SBaseRef_t."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:251:10: warning: too many arguments for format [-Wformat-extra-args] 251 | fail("SBaseRef_unsetSBaseRef(P) did not clear the SBaseRef_t."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -MF CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o.d -o CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/test/TestCompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -MF CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:44: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void SubmodelTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Submodel_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("Submodel_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:135:10: warning: too many arguments for format [-Wformat-extra-args] 135 | fail("Submodel_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:156:10: warning: too many arguments for format [-Wformat-extra-args] 156 | fail("Submodel_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Submodel_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_modelRef_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("Submodel_setModelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:197:10: warning: too many arguments for format [-Wformat-extra-args] 197 | fail("Submodel_unsetModelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_timeConversionFactor_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:235:10: warning: too many arguments for format [-Wformat-extra-args] 235 | fail("Submodel_setTimeConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:245:10: warning: too many arguments for format [-Wformat-extra-args] 245 | fail("Submodel_unsetTimeConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_extentConversionFactor_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:266:10: warning: too many arguments for format [-Wformat-extra-args] 266 | fail("Submodel_setExtentConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:276:10: warning: too many arguments for format [-Wformat-extra-args] 276 | fail("Submodel_unsetExtentConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_deletion_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test/TestSubmodel.c:299:10: warning: too many arguments for format [-Wformat-extra-args] 299 | fail("Submodel_addDeletion(...) did not make a copy of the deletion."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_comp_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test/TestCompFlatteningConverterStripPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp:13: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp: In function ‘void FbcAssociationTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("Failed to create a FbcAssociation object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test/TestCompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:13: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp: In function ‘void FbcExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:53:10: warning: too many arguments for format [-Wformat-extra-args] 53 | fail("Failed to create a FbcExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test/TestCompLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -MF CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test/TestCompFlatteningErrorMessages.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 73%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o -MF CMakeFiles/test_comp_util.dir/TestRunner.c.o.d -o CMakeFiles/test_comp_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 73%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:10: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp: In function ‘void WriteFbcExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:46:10: warning: too many arguments for format [-Wformat-extra-args] 46 | fail("Failed to create a FbcExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 73%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -MF CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o.d -o CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/test/TestFbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o -MF CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test/TestURIResolvers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 73%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp:39: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp: In function ‘void GroupsExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("Failed to create a GroupsExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestGroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestReadGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp:40: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp: In function ‘void WriteGroupsExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp:72:22: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Failed to create a GroupsExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -MF CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o.d -o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 64%] Linking CXX shared library libsbml.so cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/sbml.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,--dependency-file=CMakeFiles/sbml.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsbml.so.5 -o libsbml.so.5.20.4 CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o 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CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLConstructorException.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLError.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLLogOverride.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLFileBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLHandler.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLInputStream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLMemoryBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLNamespaces.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLTokenizer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLAttributes.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLHandler.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o /usr/lib64/libbz2.so /lib64/libz.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src && /usr/bin/cmake -E cmake_symlink_library libsbml.so.5.20.4 libsbml.so.5 libsbml.so make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Built target sbml make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Linking CXX executable test_comp_extensions cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_extensions.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_comp_extensions.dir/link.d CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -o test_comp_extensions ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Built target test_comp_extensions make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o -MF CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o.d -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/test/TestL3v2MathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Linking CXX executable test_comp_validator cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_comp_validator.dir/link.d CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -o test_comp_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Built target test_comp_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp: In function ‘void L3v2EMExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("Failed to create a L3v2extendedmathExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Linking CXX executable test_comp_sbase cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_sbase.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_comp_sbase.dir/link.d CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestPort.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -o test_comp_sbase ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Built target test_comp_sbase make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestReadL3v2EMExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Linking CXX executable test_fbc_validator cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fbc_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_fbc_validator.dir/link.d CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -o test_fbc_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Built target test_fbc_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestReadWriteInfix.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp: In function ‘void WriteL3v2EMExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("Failed to create a L3v2extendedmathExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp: In function ‘void BoundingBoxTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("BoundingBox(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp:47: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp: In function ‘void CompartmentGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("new(std::nothrow) CompartmentGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_layout_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -MF CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o.d -o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/test/TestLayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp:47: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp: In function ‘void CubicBezierTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("CubicBezier_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCurve.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCurve.cpp: In function ‘void CurveTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestCurve.cpp:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("Curve_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 76%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 73%] Linking CXX executable test_sbml_package_fbc cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_fbc.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_package_fbc.dir/link.d CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -o test_sbml_package_fbc ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Built target test_sbml_package_fbc make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestDimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestDimensions.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestDimensions.cpp: In function ‘void DimensionsTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestDimensions.cpp:62:10: warning: too many arguments for format [-Wformat-extra-args] 62 | fail("new(std::nothrow)Dimensions() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:52: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp: In function ‘void GeneralGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("new(std::nothrow) GeneralGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:52: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp: In function ‘void GraphicalObjectTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("new (std::nothrow) GraphicalObject returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Linking CXX executable test_extension_package_groups cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_groups.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_extension_package_groups.dir/link.d CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -o test_extension_package_groups ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Built target test_extension_package_groups make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLayout.cpp:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLayout.cpp: In function ‘void LayoutTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLayout.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("new(std::nothrow) Layout() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o -MF CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/test/TestCheckConsistency.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -MF CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/test/TestMultiAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Linking CXX executable test_comp_util cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_util.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_comp_util.dir/link.d CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o CMakeFiles/test_comp_util.dir/TestRunner.c.o -o test_comp_util ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Built target test_comp_util make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o -MF CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp:13: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp: In function ‘void MultiExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp:52:10: warning: too many arguments for format [-Wformat-extra-args] 52 | fail("Failed to create a MultiExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_multi_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o -MF CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o.d -o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/test/TestMultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp:47: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp: In function ‘void LineSegmentTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("LineSegment_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestPoint.cpp:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestPoint.cpp: In function ‘void PointTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestPoint.cpp:62:10: warning: too many arguments for format [-Wformat-extra-args] 62 | fail("new(std::nothrow) Point() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestPoint.cpp: In function ‘void test_Point_createWithCoordinates_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestPoint.cpp:91:10: warning: too many arguments for format [-Wformat-extra-args] 91 | fail("new(std::nothrow) Point(1.2,0.4,3.1415) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:52: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp: In function ‘void ReactionGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("new(std::nothrow) ReactionGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp: In function ‘void ReferenceGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("new(std::nothrow) ReferenceGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp: In function ‘void SpeciesGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp:66:10: warning: too many arguments for format [-Wformat-extra-args] 66 | fail("new(std::nothrow) SpeciesGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp: In function ‘void SpeciesReferenceGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("new(std::nothrow) SpeciesReferenceGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp: In function ‘void TextGlyphTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp:57:10: warning: too many arguments for format [-Wformat-extra-args] 57 | fail("new(std::nothrow) TextGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Linking CXX executable test_groups_validator cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_groups_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_groups_validator.dir/link.d CMakeFiles/test_groups_validator.dir/TestFile.cpp.o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -o test_groups_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Built target test_groups_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestQualExtension.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestQualExtension.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestQualExtension.cpp: In function ‘void QualExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestQualExtension.cpp:84:10: warning: too many arguments for format [-Wformat-extra-args] 84 | fail("Failed to create a QualExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp: In function ‘void DefaultTermTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("Failed to create a DefaultTerm object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestReadQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp: In function ‘void FunctionTermTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp:78:10: warning: too many arguments for format [-Wformat-extra-args] 78 | fail("Failed to create a FunctionTerm object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestInput.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestInput.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestInput.cpp: In function ‘void InputTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestInput.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a Input object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp: In function ‘void WriteQualExtensionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp:82:22: warning: too many arguments for format [-Wformat-extra-args] 82 | fail("Failed to create a QualExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -MF CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o.d -o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp: In function ‘void ListOfFunctionTermsTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("Failed to create a ListOfFunctionTerms object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestOutput.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestOutput.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestOutput.cpp: In function ‘void OutputTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestOutput.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a Output object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp: In function ‘void QualitativeSpeciesTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a QualitativeSpecies object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestTransition.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestTransition.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestTransition.cpp: In function ‘void TransitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestTransition.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a Transition object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Linking CXX executable test_l3v2extendedmath_validator cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_l3v2extendedmath_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_l3v2extendedmath_validator.dir/link.d CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -o test_l3v2extendedmath_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Built target test_l3v2extendedmath_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Linking CXX executable test_sbml_package_multi cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_multi.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_package_multi.dir/link.d CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -o test_sbml_package_multi ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Built target test_sbml_package_multi make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Linking CXX executable test_layout_validator cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_layout_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_layout_validator.dir/link.d CMakeFiles/test_layout_validator.dir/TestFile.cpp.o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -o test_layout_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Built target test_layout_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_qual_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o -MF CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o.d -o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/test/TestQualConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp: In function ‘void ColorDefinitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)ColorDefinition(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 75%] Linking CXX executable test_extension_package_l3v2extendedmath cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_l3v2extendedmath.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_extension_package_l3v2extendedmath.dir/link.d CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -o test_extension_package_l3v2extendedmath ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Built target test_extension_package_l3v2extendedmath make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_render_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_render_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Linking CXX executable test_multi_validator cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multi_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_multi_validator.dir/link.d CMakeFiles/test_multi_validator.dir/TestFile.cpp.o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -o test_multi_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Built target test_multi_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestEllipse.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestEllipse.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestEllipse.cpp: In function ‘void EllipseTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestEllipse.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Ellipse(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o -MF CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o.d -o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/test/TestRenderConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 80%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_render_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp:57: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp: In function ‘void GlobalStyleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp:77:14: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("new(std::nothrow)GlobalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGradientBase.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGradientBase.cpp:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGradientBase.cpp: In function ‘void GradientBaseTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGradientBase.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)LinearGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestL3ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp:56: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp: In function ‘void GlobalRenderInformationTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp:76:14: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("new(std::nothrow)GlobalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGradientStop.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGradientStop.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGradientStop.cpp: In function ‘void GradientStop_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGradientStop.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)GradientStop(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp: In function ‘void GraphicalPrimitive1DTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp: In function ‘void GraphicalPrimitive2DTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)Rectangle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotation2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotation2.cpp:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotation2.cpp: In function ‘void test_RDFAnnotation2_modelWithHistoryAndCVTerms_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotation2.cpp:225:10: warning: too many arguments for format [-Wformat-extra-args] 225 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestImage.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestImage.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestImage.cpp: In function ‘void ImageTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestImage.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Image(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGroup.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGroup.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGroup.cpp: In function ‘void GroupTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestGroup.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Group(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLineEnding.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLineEnding.cpp:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLineEnding.cpp: In function ‘void LineEndingTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLineEnding.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)LineEnding(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp: In function ‘void LinearGradientTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)LinearGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp: In function ‘void test_RDFAnnotationV4_modelWithHistoryAndCVTerms_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:232:10: warning: too many arguments for format [-Wformat-extra-args] 232 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp: In function ‘void test_RDFAnnotationV4_modelWithHistoryAndCVTerms_31_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:478:10: warning: too many arguments for format [-Wformat-extra-args] 478 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestSyncAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestUnusualRDFAnnotation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestUnusualRDFAnnotation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestUnusualRDFAnnotation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestUnusualRDFAnnotation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestUnusualRDFAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp:56: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp: In function ‘void LocalRenderInformationTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp:76:14: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("new(std::nothrow)LocalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestCVTerms.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestValidation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp:57: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp: In function ‘void LocalStyleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp:77:14: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("new(std::nothrow)LocalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestCVTerms_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestDate_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestModelCreator_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestPolygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestPolygon.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestPolygon.cpp: In function ‘void PolygonTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestPolygon.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Polygon(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestModelHistory.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestModelHistory_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp: In function ‘void RadialGradientTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)RadialGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRDFAnnotationC.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRectangle.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRectangle.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRectangle.cpp: In function ‘void RectangleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRectangle.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Rectangle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp: In function ‘void RenderCubicBezierTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)RenderCubicBezier(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp: In function ‘void RelAbsVectorTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp:72:14: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("new(std::nothrow)RelAbsVector() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp:52: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp: In function ‘void RenderCurveTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp:72:14: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("new(std::nothrow)RenderCurve(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp: In function ‘void RenderInformationBaseTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)GlobalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp: In function ‘void RenderPointTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)RenderPoint(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Linking CXX executable test_sbml_package_layout cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_layout.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_package_layout.dir/link.d CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -o test_sbml_package_layout ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Built target test_sbml_package_layout make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test/TestConversionOption.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test/TestConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderReading.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test/TestInferUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test/TestLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_extension.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test/TestSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test/TestRateOfConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test/TestSBMLConverterRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test/TestSBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test/TestSBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRateRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRateRuleConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestSBMLRateRuleConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestSBMLRateRuleConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test/TestSBMLRateRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test/TestSBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test/TestSBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o.d -o 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test/TestSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestStyle.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestStyle.cpp: In function ‘void StyleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestStyle.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)LocalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test/TestSBasePluginCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestText.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestText.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestText.cpp: In function ‘void TextTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestText.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestTransformation.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestTransformation.cpp:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestTransformation.cpp: In function ‘void TransformationTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestTransformation.cpp:69:14: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test/TestUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test/TestUnknownPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp: In function ‘void Transformation2DTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Linking CXX executable test_sbml_package_qual cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_qual.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_package_qual.dir/link.d CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -o test_sbml_package_qual ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Built target test_sbml_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test/TestUnitsConverter2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestChildFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestDerivativeFunctions.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestDerivativeFunctions.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestDerivativeFunctions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestDerivativeFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Linking CXX executable test_extension_package_qual cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_qual.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_extension_package_qual.dir/link.d CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -o test_extension_package_qual ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Built target test_extension_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestGetValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestInferRnFunctions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestInferRnFunctions.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestInferRnFunctions.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestInferRnFunctions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestInferRnFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAncestor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestL3FormulaParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFile1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFile1.cpp:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFile1.cpp: In function ‘void test_read_MathML_1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFile1.cpp:103:10: warning: too many arguments for format [-Wformat-extra-args] 103 | fail("readSBML(\"mathML_1-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAttributeFunctions.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAttributeFunctions.cpp:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAttributeFunctions.cpp: In function ‘void AttributeTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAttributeFunctions.cpp:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFile2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFile2.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFile2.cpp: In function ‘void test_read_MathML_2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFile2.cpp:83:10: warning: too many arguments for format [-Wformat-extra-args] 83 | fail("readSBML(\"mathML_2-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConsistencyChecks.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConsistencyChecks.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConsistencyChecks.cpp: In function ‘void test_consistency_checks_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConsistencyChecks.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"inconsistent.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConsistencyChecks.cpp: In function ‘void test_strict_unit_consistency_checks_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConsistencyChecks.cpp:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("readSBML(\"l3v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFileL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFileL3V2.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFileL3V2.cpp: In function ‘void test_read_MathML_L3V2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadFromFileL3V2.cpp:96:10: warning: too many arguments for format [-Wformat-extra-args] 96 | fail("readSBML(\"L3V2Math.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestReadMathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util 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-DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestValidASTNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_getId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_getMetaId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_noLocalParameters_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp:350:10: warning: too many arguments for format [-Wformat-extra-args] 350 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_noUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp:380:10: warning: too many arguments for format [-Wformat-extra-args] 380 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_noAssignments_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp:408:10: warning: too many arguments for format [-Wformat-extra-args] 408 | fail("readSBML(\"assignments-invalid.xml\") returned an empty model."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_allElements_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp:454:10: warning: too many arguments for format [-Wformat-extra-args] 454 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_withFilter_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestGetMultipleObjects.cpp:490:10: warning: too many arguments for format [-Wformat-extra-args] 490 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestWriteMathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestWriteMathMLFromAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInternalConsistencyChecks.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_warnings_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp:107:10: warning: too many arguments for format [-Wformat-extra-args] 107 | fail("readSBML(\"inconsistent-l2v1-units-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_l1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_warnings_l1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp:172:10: warning: too many arguments for format [-Wformat-extra-args] 172 | fail("readSBML(\"inconsistent-l2v1-units-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_l2v2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp:203:10: warning: too many arguments for format [-Wformat-extra-args] 203 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_l2v3_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestLevelCompatibility.cpp:237:10: warning: too many arguments for format [-Wformat-extra-args] 237 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile5.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile5.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile5.cpp: In function ‘void test_read_l2v1_assignment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile5.cpp:91:10: warning: too many arguments for format [-Wformat-extra-args] 91 | fail("readSBML(\"l2v1-assignment.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o -MF CMakeFiles/test_sbml_math.dir/TestASTNode.c.o.d -o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestASTNode.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestASTNode.c:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestASTNode.c: In function ‘void test_ASTNode_setName_1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestASTNode.c:1513:10: warning: too many arguments for format [-Wformat-extra-args] 1513 | fail("ASTNode_setName(...) did not make a copy of name."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestASTNode.c:1521:10: warning: too many arguments for format [-Wformat-extra-args] 1521 | fail("ASTNode_setName(node, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile6.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile6.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile6.cpp: In function ‘void test_read_l2v2_newComponents_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile6.cpp:96:10: warning: too many arguments for format [-Wformat-extra-args] 96 | fail("readSBML(\"l2v2-newComponents.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -MF CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o.d -o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestFormulaFormatter.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile7.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile7.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile7.cpp: In function ‘void test_read_l2v3_all_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile7.cpp:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("readSBML(\"l2v3-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o -MF CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o.d -o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestFormulaParser.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile8.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile8.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile8.cpp: In function ‘void test_read_exploit_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile8.cpp:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("readSBML(\"exploit.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile8.cpp: In function ‘void test_read_l2v4_new_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile8.cpp:105:10: warning: too many arguments for format [-Wformat-extra-args] 105 | fail("readSBML(\"l2v4-new.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o -MF CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o.d -o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestFormulaTokenizer.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile9.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile9.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile9.cpp: In function ‘void test_read_l3v1_new_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile9.cpp:87:10: warning: too many arguments for format [-Wformat-extra-args] 87 | fail("readSBML(\"l3v1-new-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o -MF CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o.d -o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestL3FormulaFormatter.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL2V5.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL2V5.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL2V5.cpp: In function ‘void test_read_l2v5_all_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL2V5.cpp:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("readSBML(\"l2v5-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL2V5.cpp: In function ‘void test_echo_l2v5_all_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL2V5.cpp:590:10: warning: too many arguments for format [-Wformat-extra-args] 590 | fail("readSBML(\"l2v5-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o -MF CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o.d -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestL3FormulaParserC.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_math.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2.cpp: In function ‘void test_read_l3v2_all_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2.cpp:102:10: warning: too many arguments for format [-Wformat-extra-args] 102 | fail("readSBML(\"l3v2-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2.cpp: In function ‘void test_echo_l3v2_all_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2.cpp:585:10: warning: too many arguments for format [-Wformat-extra-args] 585 | fail("readSBML(\"l3v2-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_1.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_1.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_1.cpp: In function ‘void test_read_l3v2_no_model_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_1.cpp:87:10: warning: too many arguments for format [-Wformat-extra-args] 87 | fail("readSBML(\"l3v2-no-model.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_1.cpp: In function ‘void test_echo_l3v2_no_model_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_1.cpp:124:10: warning: too many arguments for format [-Wformat-extra-args] 124 | fail("readSBML(\"l3v2-no-model.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_2.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_2.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function ‘void test_read_l3v2_empty_lo_1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_2.cpp:85:10: warning: too many arguments for format [-Wformat-extra-args] 85 | fail("readSBML(\"l3v2-empty-lo-1.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function ‘void test_echo_l3v2_empty_lo_1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_2.cpp:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("readSBML(\"l3v2-empty-lo-1.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function ‘void test_echo_l3v2_empty_lo_3_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_2.cpp:330:10: warning: too many arguments for format [-Wformat-extra-args] 330 | fail("readSBML(\"l3v2-empty-lo-3.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_3.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_3.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_3.cpp: In function ‘void test_read_l3v2_empty_lo_2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_3.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-lo-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_3.cpp: In function ‘void test_echo_l3v2_empty_lo_2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_3.cpp:245:10: warning: too many arguments for format [-Wformat-extra-args] 245 | fail("readSBML(\"l3v2-empty-lo-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_4.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_4.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_4.cpp: In function ‘void test_read_l3v2_empty_math_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_4.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-lo-3.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_4.cpp: In function ‘void test_echo_l3v2_empty_math_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_4.cpp:180:10: warning: too many arguments for format [-Wformat-extra-args] 180 | fail("readSBML(\"l3v2-empty-math.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_5.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_5.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_5.cpp: In function ‘void test_read_l3v2_empty_event_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_5.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-event.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_5.cpp: In function ‘void test_echo_l3v2_empty_event_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_5.cpp:173:10: warning: too many arguments for format [-Wformat-extra-args] 173 | fail("readSBML(\"l3v2-empty-event.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_6.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_6.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_6.cpp: In function ‘void test_read_l3v2_empty_event2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_6.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-event2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_6.cpp: In function ‘void test_echo_l3v2_empty_event2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFileL3V2_6.cpp:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("readSBML(\"l3v2-empty-event2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRemoveFromParent.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRemoveFromParent.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRemoveFromParent.cpp: In function ‘void test_RemoveFromParent_successfulRemoves_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRemoveFromParent.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRemoveFromParent.cpp: In function ‘void test_RemoveFromParent_alreadyRemoved_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRemoveFromParent.cpp:338:10: warning: too many arguments for format [-Wformat-extra-args] 338 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRenameIDs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRenameIDs.cpp:48: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRenameIDs.cpp: In function ‘void test_RenameIDs_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRenameIDs.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRequiredAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRequiredElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLConvertFromL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLConvertStrict.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLParentObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceFD_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp:79:10: warning: too many arguments for format [-Wformat-extra-args] 79 | fail("readSBML(\"multiple-functions.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceIA_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp:613:10: warning: too many arguments for format [-Wformat-extra-args] 613 | fail("readSBML(\"initialAssignments.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceIA_species_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp:767:10: warning: too many arguments for format [-Wformat-extra-args] 767 | fail("readSBML(\"initialAssignments_species.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_evaluateL3V2ASTWithModel_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp:837:10: warning: too many arguments for format [-Wformat-extra-args] 837 | fail("readSBML(\"multiple-functions.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceIAWithFD_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLTransforms.cpp:874:10: warning: too many arguments for format [-Wformat-extra-args] 874 | fail("readSBML(\"initialAssignments.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLValidators.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:54: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp: In function ‘void SBaseTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setMetaId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:105:10: warning: too many arguments for format [-Wformat-extra-args] 105 | fail("SBase_setMetaId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("SBase_setMetaId(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setNotes_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:136:10: warning: too many arguments for format [-Wformat-extra-args] 136 | fail("SBase_setNotes(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:156:10: warning: too many arguments for format [-Wformat-extra-args] 156 | fail("SBase_setNotes(c, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setAnnotation_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:222:10: warning: too many arguments for format [-Wformat-extra-args] 222 | fail("SBase_setAnnotation(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:234:10: warning: too many arguments for format [-Wformat-extra-args] 234 | fail("SBase_setAnnotation(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setNotesString_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:442:10: warning: too many arguments for format [-Wformat-extra-args] 442 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:467:10: warning: too many arguments for format [-Wformat-extra-args] 467 | fail("SBase_getNotesString(c, "") did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:477:10: warning: too many arguments for format [-Wformat-extra-args] 477 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setNotesString_l3_addMarkup_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:518:10: warning: too many arguments for format [-Wformat-extra-args] 518 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:538:10: warning: too many arguments for format [-Wformat-extra-args] 538 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setAnnotationString_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:567:10: warning: too many arguments for format [-Wformat-extra-args] 567 | fail("SBase_setAnnotationString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:591:10: warning: too many arguments for format [-Wformat-extra-args] 591 | fail("SBase_getAnnotationString(S, "") did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase.cpp:601:10: warning: too many arguments for format [-Wformat-extra-args] 601 | fail("SBase_setAnnotationString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp: In function ‘void SBaseIdNameTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:90:10: warning: too many arguments for format [-Wformat-extra-args] 90 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:97:10: warning: too many arguments for format [-Wformat-extra-args] 97 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:104:10: warning: too many arguments for format [-Wformat-extra-args] 104 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:118:10: warning: too many arguments for format [-Wformat-extra-args] 118 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:132:10: warning: too many arguments for format [-Wformat-extra-args] 132 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:139:10: warning: too many arguments for format [-Wformat-extra-args] 139 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:146:10: warning: too many arguments for format [-Wformat-extra-args] 146 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:153:10: warning: too many arguments for format [-Wformat-extra-args] 153 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:232:10: warning: too many arguments for format [-Wformat-extra-args] 232 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:244:10: warning: too many arguments for format [-Wformat-extra-args] 244 | fail("SBase_setName(S31, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:308:10: warning: too many arguments for format [-Wformat-extra-args] 308 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:320:10: warning: too many arguments for format [-Wformat-extra-args] 320 | fail("SBase_setName(S32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_3_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:384:10: warning: too many arguments for format [-Wformat-extra-args] 384 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:396:10: warning: too many arguments for format [-Wformat-extra-args] 396 | fail("SBase_setName(E31, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_4_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:460:10: warning: too many arguments for format [-Wformat-extra-args] 460 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:472:10: warning: too many arguments for format [-Wformat-extra-args] 472 | fail("SBase_setName(E32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_6_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:595:10: warning: too many arguments for format [-Wformat-extra-args] 595 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:607:10: warning: too many arguments for format [-Wformat-extra-args] 607 | fail("SBase_setName(U32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_8_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:773:10: warning: too many arguments for format [-Wformat-extra-args] 773 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:785:10: warning: too many arguments for format [-Wformat-extra-args] 785 | fail("SBase_setName(AR32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_10_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:978:10: warning: too many arguments for format [-Wformat-extra-args] 978 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBaseIdName.cpp:990:10: warning: too many arguments for format [-Wformat-extra-args] 990 | fail("SBase_setName(EA32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 79%] Linking CXX executable test_qual_validator cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_qual_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_qual_validator.dir/link.d CMakeFiles/test_qual_validator.dir/TestFile.cpp.o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -o test_qual_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Built target test_qual_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase_newSetters.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase_newSetters.cpp:52: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase_newSetters.cpp: In function ‘void SBaseTest_setup1()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBase_newSetters.cpp:79:10: warning: too many arguments for format [-Wformat-extra-args] 79 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestWriteL3SBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestWriteL3V2SBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAlgebraicRule.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAlgebraicRule.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAlgebraicRule.c: In function ‘void AlgebraicRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAlgebraicRule.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("AlgebraicRule_createAlgebraic() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestWriteSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Linking CXX executable test_render_validator cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_render_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_render_validator.dir/link.d CMakeFiles/test_render_validator.dir/TestFile.cpp.o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -o test_render_validator ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Built target test_render_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAssignmentRule.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAssignmentRule.c:52: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAssignmentRule.c: In function ‘void AssignmentRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAssignmentRule.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("AssignmentRule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAssignmentRule.c: In function ‘void test_AssignmentRule_setVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAssignmentRule.c:118:10: warning: too many arguments for format [-Wformat-extra-args] 118 | fail("AssignmentRule_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAssignmentRule.c:130:10: warning: too many arguments for format [-Wformat-extra-args] 130 | fail("AssignmentRule_setVariable(AR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAssignmentRule.c: In function ‘void test_AssignmentRule_unsetVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestAssignmentRule.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("AssignmentRule_unsetVariable(AR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c: In function ‘void CompartmentTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Compartment_create(2, 4) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Compartment_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c:196:10: warning: too many arguments for format [-Wformat-extra-args] 196 | fail("Compartment_setId(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c:214:10: warning: too many arguments for format [-Wformat-extra-args] 214 | fail("Compartment_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c:226:10: warning: too many arguments for format [-Wformat-extra-args] 226 | fail("Compartment_setName(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c:244:10: warning: too many arguments for format [-Wformat-extra-args] 244 | fail("Compartment_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c:256:10: warning: too many arguments for format [-Wformat-extra-args] 256 | fail("Compartment_setUnits(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setOutside_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c:274:10: warning: too many arguments for format [-Wformat-extra-args] 274 | fail("Compartment_setOutside(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment.c:286:10: warning: too many arguments for format [-Wformat-extra-args] 286 | fail("Compartment_setOutside(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestCalculatedUnitDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType.c: In function ‘void CompartmentTypeTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("CompartmentType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType.c: In function ‘void test_CompartmentType_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("CompartmentType_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("CompartmentType_setId(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType.c: In function ‘void test_CompartmentType_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType.c:168:10: warning: too many arguments for format [-Wformat-extra-args] 168 | fail("CompartmentType_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType.c:180:10: warning: too many arguments for format [-Wformat-extra-args] 180 | fail("CompartmentType_setName(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestDerivedUnitDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType_newSetters.c: In function ‘void CompartmentTypeTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentType_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("CompartmentType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentVolumeRule.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentVolumeRule.c:47: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentVolumeRule.c: In function ‘void CompartmentVolumeRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentVolumeRule.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Rule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentVolumeRule.c: In function ‘void test_CompartmentVolumeRule_setCompartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentVolumeRule.c:149:11: warning: too many arguments for format [-Wformat-extra-args] 149 | fail( "Rule_setVariable(...)" | ^~~~~~~~~~~~~~~~~~~~~~~ 150 | " did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartmentVolumeRule.c:164:11: warning: too many arguments for format [-Wformat-extra-args] 164 | fail( "Rule_setVariable(CVR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestDerivedUnitDefinitions_undefined.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment_newSetters.c: In function ‘void CompartmentTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestCompartment_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Compartment_create(2, 4) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 92%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestFormulaUnitsData.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint.c: In function ‘void ConstraintTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("Constraint_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint.c: In function ‘void test_Constraint_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint.c:143:10: warning: too many arguments for format [-Wformat-extra-args] 143 | fail("Constraint_setMath(C, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint.c: In function ‘void test_Constraint_setMessage_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint_newSetters.c: In function ‘void ConstraintTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint_newSetters.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("Constraint_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint_newSetters.c: In function ‘void test_Constraint_setMessage1_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint_newSetters.c:137:10: warning: too many arguments for format [-Wformat-extra-args] 137 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint_newSetters.c: In function ‘void test_Constraint_setMessage2_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestConstraint_newSetters.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestDelay.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestDelay.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestDelay.c: In function ‘void DelayTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestDelay.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Delay_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestDelay.c: In function ‘void test_Delay_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestDelay.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Delay_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 92%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestFormulaUnitsData_map.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestUnitFormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c: In function ‘void EventTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("Event_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c: In function ‘void test_Event_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Event_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Event_setId(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c: In function ‘void test_Event_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Event_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:196:10: warning: too many arguments for format [-Wformat-extra-args] 196 | fail("Event_setName(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c: In function ‘void test_Event_setTrigger_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:216:10: warning: too many arguments for format [-Wformat-extra-args] 216 | fail("Event_setTrigger(...) did not make a copy of trigger."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:228:10: warning: too many arguments for format [-Wformat-extra-args] 228 | fail("Event_setTrigger(E, NULL) did not clear trigger."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c: In function ‘void test_Event_setDelay_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:250:10: warning: too many arguments for format [-Wformat-extra-args] 250 | fail("Event_setDelay(...) did not make a copy of Delay."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:262:10: warning: too many arguments for format [-Wformat-extra-args] 262 | fail("Event_setDelay(E, NULL) did not clear Delay."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c: In function ‘void test_Event_setTimeUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:283:10: warning: too many arguments for format [-Wformat-extra-args] 283 | fail("Event_setTimeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent.c:295:10: warning: too many arguments for format [-Wformat-extra-args] 295 | fail("Event_setTimeUnits(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c: In function ‘void EventAssignmentTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("EventAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c: In function ‘void test_EventAssignment_setVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("EventAssignment_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("EventAssignment_setVariable(EA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c: In function ‘void test_EventAssignment_unsetVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c:168:10: warning: too many arguments for format [-Wformat-extra-args] 168 | fail("EventAssignment_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c:176:10: warning: too many arguments for format [-Wformat-extra-args] 176 | fail("EventAssignment_unsetVariable(EA) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c: In function ‘void test_EventAssignment_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment.c:218:10: warning: too many arguments for format [-Wformat-extra-args] 218 | fail("EventAssignment_setMath(EA, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestUnitFormulaFormatter1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment_newSetters.c: In function ‘void EventAssignmentTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEventAssignment_newSetters.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("EventAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o -MF CMakeFiles/test_sbml_util.dir/TestList.c.o.d -o CMakeFiles/test_sbml_util.dir/TestList.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestList.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestList.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestList.c: In function ‘ListTest_setup’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestList.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("List_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o -MF CMakeFiles/test_sbml_util.dir/TestMemory.c.o.d -o CMakeFiles/test_sbml_util.dir/TestMemory.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestMemory.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestMemory.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestMemory.c: In function ‘test_memory_safe_malloc_fn’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestMemory.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("safe_malloc() should not return NULL"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_util.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent_newSetters.c: In function ‘void EventTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestEvent_newSetters.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("Event_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o -MF CMakeFiles/test_sbml_util.dir/TestStack.c.o.d -o CMakeFiles/test_sbml_util.dir/TestStack.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestStack.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestStack.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestStack.c: In function ‘StackTest_setup’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestStack.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("Stack_create(10) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -MF CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o.d -o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestStringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestStringBuffer.c:42: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestStringBuffer.c: In function ‘StringBufferTest_setup’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestStringBuffer.c:59:10: warning: too many arguments for format [-Wformat-extra-args] 59 | fail("StringBuffer_create(10) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestStringBuffer.c: In function ‘test_StringBuffer_toString_fn’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestStringBuffer.c:357:10: warning: too many arguments for format [-Wformat-extra-args] 357 | fail("StringBuffer_toString() did not make a copy of its internal buffer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 93%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestUnitFormulaFormatter2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o -MF CMakeFiles/test_sbml_util.dir/TestUtil.c.o.d -o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestUtil.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestUtil.c:55: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestUtil.c: In function ‘test_util_NaN_fn’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestUtil.c:269:24: warning: too many arguments for format [-Wformat-extra-args] 269 | fail_unless( d != d, "util_NaN() did not return NaN."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestUtil.c: In function ‘test_util_NegInf_fn’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestUtil.c:281:10: warning: too many arguments for format [-Wformat-extra-args] 281 | fail("util_NegInf() did not return -Inf."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestUtil.c: In function ‘test_util_PosInf_fn’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestUtil.c:294:10: warning: too many arguments for format [-Wformat-extra-args] 294 | fail("util_PosInf() did not return +Inf."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestUtil.c: In function ‘test_util_NegZero_fn’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test/TestUtil.c:305:23: warning: too many arguments for format [-Wformat-extra-args] 305 | fail_unless(d == 0, "util_NegZero() did not even return a zero!"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c: In function ‘void FunctionDefinitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("FunctionDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c: In function ‘void test_FunctionDefinition_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c:207:10: warning: too many arguments for format [-Wformat-extra-args] 207 | fail("FunctionDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c:219:10: warning: too many arguments for format [-Wformat-extra-args] 219 | fail("FunctionDefinition_setId(FD, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c: In function ‘void test_FunctionDefinition_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c:237:10: warning: too many arguments for format [-Wformat-extra-args] 237 | fail("FunctionDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c:249:10: warning: too many arguments for format [-Wformat-extra-args] 249 | fail("FunctionDefinition_setName(FD, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c: In function ‘void test_FunctionDefinition_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition.c:291:10: warning: too many arguments for format [-Wformat-extra-args] 291 | fail("FunctionDefinition_setMath(FD, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestUnitFormulaFormatter3.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Linking CXX executable test_sbml_util cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_util.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_util.dir/link.d CMakeFiles/test_sbml_util.dir/TestList.c.o CMakeFiles/test_sbml_util.dir/TestMemory.c.o CMakeFiles/test_sbml_util.dir/TestRunner.c.o CMakeFiles/test_sbml_util.dir/TestStack.c.o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -o test_sbml_util ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Built target test_sbml_util make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition_newSetters.c:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition_newSetters.c: In function ‘void FunctionDefinitionTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestFunctionDefinition_newSetters.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("FunctionDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o -MF CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o.d -o CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test/TestConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c: In function ‘void InitialAssignmentTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("InitialAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c: In function ‘void test_InitialAssignment_setSymbol_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c:135:10: warning: too many arguments for format [-Wformat-extra-args] 135 | fail("InitialAssignment_setSymbol(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c:147:10: warning: too many arguments for format [-Wformat-extra-args] 147 | fail("InitialAssignment_setSymbol(IA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c: In function ‘void test_InitialAssignment_unsetSymbol_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c:165:10: warning: too many arguments for format [-Wformat-extra-args] 165 | fail("InitialAssignment_setSymbol(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c:173:10: warning: too many arguments for format [-Wformat-extra-args] 173 | fail("InitialAssignment_unsetSymbol(IA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c: In function ‘void test_InitialAssignment_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment.c:214:10: warning: too many arguments for format [-Wformat-extra-args] 214 | fail("InitialAssignment_setMath(IA, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestUtilsUnit.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment_newSetters.c: In function ‘void InitialAssignmentTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestInitialAssignment_newSetters.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("InitialAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestUtilsUnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw.c: In function ‘void KineticLawTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("KineticLaw_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw.c: In function ‘void test_KineticLaw_setFormula_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw.c:197:10: warning: too many arguments for format [-Wformat-extra-args] 197 | fail("KineticLaw_setFormula(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw.c:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("KineticLaw_setFormula(kl, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw.c: In function ‘void test_KineticLaw_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw.c:288:11: warning: too many arguments for format [-Wformat-extra-args] 288 | fail( "KineticLaw_setMath(kl, NULL) did not clear ASTNode." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_units.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw_newSetters.c: In function ‘void KineticLawTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestKineticLaw_newSetters.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("KineticLaw_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c: In function ‘void L3CompartmentTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Compartment_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c: In function ‘void test_L3_Compartment_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c:130:10: warning: too many arguments for format [-Wformat-extra-args] 130 | fail("Compartment_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c: In function ‘void test_L3_Compartment_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("Compartment_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c:159:10: warning: too many arguments for format [-Wformat-extra-args] 159 | fail("Compartment_unsetName(C) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c: In function ‘void test_L3_Compartment_units_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("Compartment_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Compartment.c:188:10: warning: too many arguments for format [-Wformat-extra-args] 188 | fail("Compartment_unsetUnits(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Event.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Event.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Event.c: In function ‘void L3EventTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Event.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Event_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Event.c: In function ‘void test_L3_Event_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Event.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("Event_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Event.c:132:10: warning: too many arguments for format [-Wformat-extra-args] 132 | fail("Event_unsetId(E) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Event.c: In function ‘void test_L3_Event_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Event.c:152:10: warning: too many arguments for format [-Wformat-extra-args] 152 | fail("Event_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Event.c:161:10: warning: too many arguments for format [-Wformat-extra-args] 161 | fail("Event_unsetName(E) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3KineticLaw.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3KineticLaw.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3KineticLaw.c: In function ‘void L3KineticLawTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3KineticLaw.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("KineticLaw_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c: In function ‘void L3LocalParameterTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("LocalParameter_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c: In function ‘void test_L3_LocalParameter_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("LocalParameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c: In function ‘void test_L3_LocalParameter_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c:143:10: warning: too many arguments for format [-Wformat-extra-args] 143 | fail("LocalParameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c:152:10: warning: too many arguments for format [-Wformat-extra-args] 152 | fail("LocalParameter_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c: In function ‘void test_L3_LocalParameter_units_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c:172:10: warning: too many arguments for format [-Wformat-extra-args] 172 | fail("LocalParameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3LocalParameter.c:181:10: warning: too many arguments for format [-Wformat-extra-args] 181 | fail("LocalParameter_unsetUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Linking CXX executable test_sbml_annotation cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_annotation.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_annotation.dir/link.d CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestUnusualRDFAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -o test_sbml_annotation ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Built target test_sbml_annotation make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c: In function ‘void L3ModelTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Model_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:131:10: warning: too many arguments for format [-Wformat-extra-args] 131 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:140:10: warning: too many arguments for format [-Wformat-extra-args] 140 | fail("Model_unsetId(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:160:10: warning: too many arguments for format [-Wformat-extra-args] 160 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("Model_unsetName(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_substanceUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:189:10: warning: too many arguments for format [-Wformat-extra-args] 189 | fail("Model_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:198:10: warning: too many arguments for format [-Wformat-extra-args] 198 | fail("Model_unsetSubstanceUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_timeUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:218:10: warning: too many arguments for format [-Wformat-extra-args] 218 | fail("Model_setTimeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:227:10: warning: too many arguments for format [-Wformat-extra-args] 227 | fail("Model_unsetTimeUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_volumeUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:247:10: warning: too many arguments for format [-Wformat-extra-args] 247 | fail("Model_setVolumeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:256:10: warning: too many arguments for format [-Wformat-extra-args] 256 | fail("Model_unsetVolumeUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_areaUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:276:10: warning: too many arguments for format [-Wformat-extra-args] 276 | fail("Model_setAreaUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:285:10: warning: too many arguments for format [-Wformat-extra-args] 285 | fail("Model_unsetAreaUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_lengthUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:305:10: warning: too many arguments for format [-Wformat-extra-args] 305 | fail("Model_setLengthUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:314:10: warning: too many arguments for format [-Wformat-extra-args] 314 | fail("Model_unsetLengthUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_extentUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:334:10: warning: too many arguments for format [-Wformat-extra-args] 334 | fail("Model_setExtentUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:343:10: warning: too many arguments for format [-Wformat-extra-args] 343 | fail("Model_unsetExtentUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_conversionFactor_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:363:10: warning: too many arguments for format [-Wformat-extra-args] 363 | fail("Model_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Model.c:372:10: warning: too many arguments for format [-Wformat-extra-args] 372 | fail("Model_unsetConversionFactor(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c: In function ‘void L3ParameterTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Parameter_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c: In function ‘void test_L3_Parameter_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("Parameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c: In function ‘void test_L3_Parameter_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("Parameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Parameter_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c: In function ‘void test_L3_Parameter_units_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c:174:10: warning: too many arguments for format [-Wformat-extra-args] 174 | fail("Parameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Parameter.c:183:10: warning: too many arguments for format [-Wformat-extra-args] 183 | fail("Parameter_unsetUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c: In function ‘void L3ReactionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Reaction_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("Reaction_create(3, 2) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c: In function ‘void test_L3_Reaction_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("Reaction_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c: In function ‘void test_L3_Reaction_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c:153:10: warning: too many arguments for format [-Wformat-extra-args] 153 | fail("Reaction_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c:162:10: warning: too many arguments for format [-Wformat-extra-args] 162 | fail("Reaction_unsetName(R) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c: In function ‘void test_L3_Reaction_compartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c:182:10: warning: too many arguments for format [-Wformat-extra-args] 182 | fail("Reaction_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Reaction.c:191:10: warning: too many arguments for format [-Wformat-extra-args] 191 | fail("Reaction_unsetCompartment(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c: In function ‘void L3SpeciesTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("Species_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("Species_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c:158:10: warning: too many arguments for format [-Wformat-extra-args] 158 | fail("Species_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c:167:10: warning: too many arguments for format [-Wformat-extra-args] 167 | fail("Species_unsetName(S) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_compartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_substanceUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c:252:10: warning: too many arguments for format [-Wformat-extra-args] 252 | fail("Species_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c:261:10: warning: too many arguments for format [-Wformat-extra-args] 261 | fail("Species_unsetSubstanceUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_conversionFactor_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c:368:10: warning: too many arguments for format [-Wformat-extra-args] 368 | fail("Species_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Species.c:377:10: warning: too many arguments for format [-Wformat-extra-args] 377 | fail("Species_unsetConversionFactor(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLExceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c: In function ‘void L3SpeciesReferenceTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("SpeciesReference_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c: In function ‘void test_L3_SpeciesReference_id_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c:122:10: warning: too many arguments for format [-Wformat-extra-args] 122 | fail("SpeciesReference_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c: In function ‘void test_L3_SpeciesReference_name_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c:142:10: warning: too many arguments for format [-Wformat-extra-args] 142 | fail("SpeciesReference_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("SpeciesReference_unsetName(SR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c: In function ‘void test_L3_SpeciesReference_species_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3SpeciesReference.c:171:10: warning: too many arguments for format [-Wformat-extra-args] 171 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Trigger.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Trigger.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Trigger.c: In function ‘void L3TriggerTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Trigger.c:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Trigger_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Unit.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Unit.c:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Unit.c: In function ‘void L3UnitTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestL3Unit.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Unit_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_xml.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestListOf.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLAttributesC.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLErrorC.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestModel.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel.c:47: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel.c: In function ‘void ModelTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Model_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel.c: In function ‘void test_Model_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Model_setId(M, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel.c: In function ‘void test_Model_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel.c:189:10: warning: too many arguments for format [-Wformat-extra-args] 189 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel.c:201:10: warning: too many arguments for format [-Wformat-extra-args] 201 | fail("Model_setName(M, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 96%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLErrorLog.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLInputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel_newSetters.c:65: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel_newSetters.c: In function ‘void ModelTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModel_newSetters.c:87:10: warning: too many arguments for format [-Wformat-extra-args] 87 | fail("Model_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLNamespaces.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLNamespaces.c:45: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLNamespaces.c: In function ‘void XMLNamespacesTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLNamespaces.c:61:10: warning: too many arguments for format [-Wformat-extra-args] 61 | fail("XMLNamespacesTest_setup() failed to create a XMLNamespaces object."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLNode_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModifierSpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModifierSpeciesReference.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModifierSpeciesReference.c: In function ‘void ModifierSpeciesReferenceTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModifierSpeciesReference.c:72:11: warning: too many arguments for format [-Wformat-extra-args] 72 | fail( "ModifierSpeciesReference_create() returned a NULL pointer." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModifierSpeciesReference.c: In function ‘void test_ModifierSpeciesReference_setSpecies_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModifierSpeciesReference.c:124:11: warning: too many arguments for format [-Wformat-extra-args] 124 | fail( "ModifierModifierSpeciesReference_setSpecies(...) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | "did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModifierSpeciesReference.c:140:11: warning: too many arguments for format [-Wformat-extra-args] 140 | fail( "ModifierModifierSpeciesReference_setSpecies(MSR, NULL) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | "did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModifierSpeciesReference.c: In function ‘void test_ModifierSpeciesReference_unsetSpecies_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModifierSpeciesReference.c:162:11: warning: too many arguments for format [-Wformat-extra-args] 162 | fail( "ModifierModifierSpeciesReference_setSpecies(...) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | "did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestModifierSpeciesReference.c:171:11: warning: too many arguments for format [-Wformat-extra-args] 171 | fail( "ModifierModifierSpeciesReference_unsetSpecies(MSR) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | "did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLOutputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c: In function ‘void ParameterTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Parameter_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c: In function ‘void test_Parameter_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c:148:10: warning: too many arguments for format [-Wformat-extra-args] 148 | fail("Parameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c:160:10: warning: too many arguments for format [-Wformat-extra-args] 160 | fail("Parameter_setId(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c: In function ‘void test_Parameter_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c:178:10: warning: too many arguments for format [-Wformat-extra-args] 178 | fail("Parameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c:190:10: warning: too many arguments for format [-Wformat-extra-args] 190 | fail("Parameter_setName(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c: In function ‘void test_Parameter_setUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c:208:10: warning: too many arguments for format [-Wformat-extra-args] 208 | fail("Parameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter.c:220:10: warning: too many arguments for format [-Wformat-extra-args] 220 | fail("Parameter_setUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameterRule.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameterRule.c:47: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameterRule.c: In function ‘void ParameterRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameterRule.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Rule_createAssignment() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameterRule.c: In function ‘void test_ParameterRule_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameterRule.c:153:11: warning: too many arguments for format [-Wformat-extra-args] 153 | fail( "ParameterRule_setName(...) did not make a copy of string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameterRule.c:168:11: warning: too many arguments for format [-Wformat-extra-args] 168 | fail( "Rule_setVariable(PR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameterRule.c: In function ‘void test_ParameterRule_setUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameterRule.c:187:11: warning: too many arguments for format [-Wformat-extra-args] 187 | fail( "Rule_setUnits(...) did not make a copy of string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameterRule.c:199:11: warning: too many arguments for format [-Wformat-extra-args] 199 | fail( "Rule_setUnits(PR, NULL) did not clear string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLToken.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLToken_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter_newSetters.c: In function ‘void ParameterTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestParameter_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Parameter_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/.. -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test/TestXMLTriple.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestPriority.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestPriority.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestPriority.c: In function ‘void PriorityTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestPriority.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Priority_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestPriority.c: In function ‘void test_Priority_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestPriority.c:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("Priority_setMath(P, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRateRule.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRateRule.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRateRule.c: In function ‘void RateRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRateRule.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("RateRule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRateRule.c: In function ‘void test_RateRule_setVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRateRule.c:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("RateRule_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRateRule.c:129:10: warning: too many arguments for format [-Wformat-extra-args] 129 | fail("RateRule_setVariable(RR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRateRule.c: In function ‘void test_RateRule_unsetVariable_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRateRule.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("RateRule_unsetVariable(RR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c:47: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c: In function ‘void ReactionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Reaction_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c: In function ‘void test_Reaction_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c:158:10: warning: too many arguments for format [-Wformat-extra-args] 158 | fail("Reaction_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c:170:10: warning: too many arguments for format [-Wformat-extra-args] 170 | fail("Reaction_setId(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c: In function ‘void test_Reaction_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c:188:10: warning: too many arguments for format [-Wformat-extra-args] 188 | fail("Reaction_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c:200:10: warning: too many arguments for format [-Wformat-extra-args] 200 | fail("Reaction_setName(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c: In function ‘void test_Reaction_compartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c:275:10: warning: too many arguments for format [-Wformat-extra-args] 275 | fail("Reaction_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction.c:287:10: warning: too many arguments for format [-Wformat-extra-args] 287 | fail("Reaction_unsetCompartment(r) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction_newSetters.c:52: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction_newSetters.c: In function ‘void ReactionTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReaction_newSetters.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("Reaction_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile1.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile1.c:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile1.c: In function ‘void test_read_l1v1_branch_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile1.c:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("readSBML(\"l1v1-branch.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile2.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile2.c:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile2.c: In function ‘void test_read_l1v1_units_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile2.c:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("readSBML(\"l1v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile3.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile3.c:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile3.c: In function ‘void test_read_l1v1_rules_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile3.c:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("readSBML(\"l1v1-rules.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile4.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile4.c:46: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile4.c: In function ‘void test_read_l1v1_minimal_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestReadFromFile4.c:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("readSBML(\"l1v1-minimal.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule.c:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule.c: In function ‘void RuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule.c:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Rule_createAlgebraic() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule.c: In function ‘void test_Rule_setFormula_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule.c:108:10: warning: too many arguments for format [-Wformat-extra-args] 108 | fail("Rule_setFormula(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule.c:120:10: warning: too many arguments for format [-Wformat-extra-args] 120 | fail("Rule_setFormula(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule.c: In function ‘void test_Rule_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("Rule_setMath(R, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule_newSetters.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule_newSetters.c: In function ‘void RuleTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRule_newSetters.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("Rule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLConvert.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLDocument.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLErrorLog.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLErrorLog.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLErrorLog.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLErrorLog.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSBMLErrorLog.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c: In function ‘void SpeciesTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Species_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:167:10: warning: too many arguments for format [-Wformat-extra-args] 167 | fail("Species_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("Species_setId(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:197:10: warning: too many arguments for format [-Wformat-extra-args] 197 | fail("Species_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("Species_setName(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setCompartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:227:10: warning: too many arguments for format [-Wformat-extra-args] 227 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:239:10: warning: too many arguments for format [-Wformat-extra-args] 239 | fail("Species_setComartment(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c: In function ‘void test_Species_unsetCompartment_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:257:10: warning: too many arguments for format [-Wformat-extra-args] 257 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:265:10: warning: too many arguments for format [-Wformat-extra-args] 265 | fail("Species_unsetComartment(S) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setSubstanceUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:313:10: warning: too many arguments for format [-Wformat-extra-args] 313 | fail("Species_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:325:10: warning: too many arguments for format [-Wformat-extra-args] 325 | fail("Species_setSubstanceUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setSpatialSizeUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:345:10: warning: too many arguments for format [-Wformat-extra-args] 345 | fail("Species_setSpatialSizeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:357:10: warning: too many arguments for format [-Wformat-extra-args] 357 | fail("Species_setSpatialSizeUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setUnits_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:377:10: warning: too many arguments for format [-Wformat-extra-args] 377 | fail("Species_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies.c:389:10: warning: too many arguments for format [-Wformat-extra-args] 389 | fail("Species_setUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesConcentrationRule.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesConcentrationRule.c:47: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesConcentrationRule.c: In function ‘void SpeciesConcentrationRuleTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesConcentrationRule.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Rule_createAssignment() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesConcentrationRule.c: In function ‘void test_SpeciesConcentrationRule_setSpecies_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesConcentrationRule.c:148:11: warning: too many arguments for format [-Wformat-extra-args] 148 | fail( "SpeciesConcentrationRule_setSpecies(...)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | " did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesConcentrationRule.c:163:11: warning: too many arguments for format [-Wformat-extra-args] 163 | fail( "SpeciesConcentrationRule_setSpecies(SCR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c:53: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c: In function ‘void SpeciesReferenceTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("SpeciesReference_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c: In function ‘void test_SpeciesReference_setSpecies_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c:162:10: warning: too many arguments for format [-Wformat-extra-args] 162 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c:174:10: warning: too many arguments for format [-Wformat-extra-args] 174 | fail("SpeciesReference_setSpecies(SR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c: In function ‘void test_SpeciesReference_unsetSpecies_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c:192:10: warning: too many arguments for format [-Wformat-extra-args] 192 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c:200:10: warning: too many arguments for format [-Wformat-extra-args] 200 | fail("SpeciesReference_unsetSpecies(SR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c: In function ‘void test_SpeciesReference_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c:218:10: warning: too many arguments for format [-Wformat-extra-args] 218 | fail("SpeciesReference_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference.c:230:10: warning: too many arguments for format [-Wformat-extra-args] 230 | fail("SpeciesReference_setId(SR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference_newSetters.c:52: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference_newSetters.c: In function ‘void SpeciesReferenceTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesReference_newSetters.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("SpeciesReference_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType.c: In function ‘void SpeciesTypeTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("SpeciesType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType.c: In function ‘void test_SpeciesType_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType.c:139:10: warning: too many arguments for format [-Wformat-extra-args] 139 | fail("SpeciesType_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("SpeciesType_setId(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType.c: In function ‘void test_SpeciesType_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType.c:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("SpeciesType_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType.c:181:10: warning: too many arguments for format [-Wformat-extra-args] 181 | fail("SpeciesType_setName(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType_newSetters.c: In function ‘void SpeciesTypeTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpeciesType_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("SpeciesType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies_newSetters.c: In function ‘void SpeciesTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSpecies_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Species_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestStoichiometryMath.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestStoichiometryMath.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestStoichiometryMath.c: In function ‘void StoichiometryMathTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestStoichiometryMath.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("StoichiometryMath_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestStoichiometryMath.c: In function ‘void test_StoichiometryMath_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestStoichiometryMath.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("StoichiometryMath_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestSyntaxChecker.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestTrigger.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestTrigger.c:51: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestTrigger.c: In function ‘void TriggerTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestTrigger.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Trigger_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestTrigger.c: In function ‘void test_Trigger_setMath_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestTrigger.c:164:10: warning: too many arguments for format [-Wformat-extra-args] 164 | fail("Trigger_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnit.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnit.c:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnit.c: In function ‘void UnitTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnit.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Unit_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition.c:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition.c: In function ‘void UnitDefinitionTest_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("UnitDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition.c: In function ‘void test_UnitDefinition_setId_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition.c:164:10: warning: too many arguments for format [-Wformat-extra-args] 164 | fail("UnitDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition.c:176:10: warning: too many arguments for format [-Wformat-extra-args] 176 | fail("UnitDefinition_setId(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition.c: In function ‘void test_UnitDefinition_setName_fn(int)’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition.c:194:10: warning: too many arguments for format [-Wformat-extra-args] 194 | fail("UnitDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition.c:206:10: warning: too many arguments for format [-Wformat-extra-args] 206 | fail("UnitDefinition_setName(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition_newSetters.c:50: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition_newSetters.c: In function ‘void UnitDefinitionTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitDefinition_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("UnitDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnit_newSetters.c In file included from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnit_newSetters.c:49: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnit_newSetters.c: In function ‘void UnitTest1_setup()’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test/TestUnit_newSetters.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Unit_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Linking CXX executable test_sbml_extension cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_extension.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_extension.dir/link.d CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -o test_sbml_extension ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target test_sbml_extension make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Linking CXX executable test_sbml_conversion cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_conversion.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_conversion.dir/link.d CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLRateRuleConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -o test_sbml_conversion ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target test_sbml_conversion make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 86%] Linking CXX executable test_sbml_package_render cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_render.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_package_render.dir/link.d CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -o test_sbml_package_render ../../../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target test_sbml_package_render make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 89%] Linking CXX executable test_sbml_math cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_math.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_math.dir/link.d CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestDerivativeFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o CMakeFiles/test_sbml_math.dir/TestInferRnFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -o test_sbml_math ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target test_sbml_math make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Linking CXX executable test_sbml_validator cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_validator.dir/link.d CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -o test_sbml_validator ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target test_sbml_validator make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 94%] Linking CXX executable test_sbml_units cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_units.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_units.dir/link.d CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -o test_sbml_units ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target test_sbml_units make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 98%] Linking CXX executable test_sbml_xml cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_xml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_xml.dir/link.d CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -o test_sbml_xml ../../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target test_sbml_xml make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Linking CXX executable test_sbml_sbml cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_sbml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/test_sbml_sbml.dir/link.d CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o 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CMakeFiles/test_sbml_sbml.dir/TestRule.c.o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLErrorLog.c.o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -o test_sbml_sbml ../../libsbml-static.a /usr/lib64/libcheck.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target test_sbml_sbml make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/bindings/r/CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_r_lib_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r/../swig -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include -I/usr/include/R -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/r/CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -MF CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o.d -o CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_python_lib_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/../swig -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include -I/usr/include/python3.13 -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o -MF CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o.d -o CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_ruby_lib_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml 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-isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o -MF CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o.d -o CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_r_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,--dependency-file=CMakeFiles/binding_r_lib.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -L/usr/lib64/R/lib ../../libsbml-static.a -lR /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target binding_r_lib make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Building CXX object src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_perl_lib_EXPORTS -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src -I/usr/lib64/perl5/CORE -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/include -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl/../swig -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/common -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/extension -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/util -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator -I/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/constraints -isystem /usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o -MF CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o.d -o CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o -c /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl/LibSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Linking CXX shared library _libsbml.so cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,--dependency-file=CMakeFiles/binding_python_lib.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,_libsbml.so -o _libsbml.so CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target binding_python_lib make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_ruby_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,--dependency-file=CMakeFiles/binding_ruby_lib.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a /usr/lib64/libruby.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target binding_ruby_lib make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Linking CXX shared module LibSBML.so cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch -fno-strict-aliasing -fPIC -DNDEBUG -Wl,--dependency-file=CMakeFiles/binding_perl_lib.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o LibSBML.so CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o ../../libsbml-static.a /usr/lib64/libperl.so /usr/lib64/libbz2.so -lminizip /usr/lib64/libxml2.so /lib64/libz.so -lm make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target binding_perl_lib make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Create R Package (64bit) cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML_5.20.4_R_powerpc64le-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' + /usr/bin/make -O -j8 V=1 VERBOSE=1 -C build libsbml.pc make: Nothing to be done for 'libsbml.pc'. + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.FfKFRv + umask 022 + cd /builddir/build/BUILD/libsbml-5.20.4-build + '[' /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT ++ dirname /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT + mkdir -p /builddir/build/BUILD/libsbml-5.20.4-build + mkdir /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsbml-5.20.4 + /usr/bin/make install DESTDIR=/builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/cmake -S/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 -B/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/CMakeFiles /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/CMakeFiles/sbml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 34%] Built target sbml /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml-static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 69%] Built target sbml-static /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 70%] Built target test_comp_extensions /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 71%] Built target test_comp_sbase /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Built target test_comp_util /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Built target test_comp_validator /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 72%] Built target test_sbml_package_fbc /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 73%] Built target test_fbc_validator /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 73%] Built target test_extension_package_groups /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 73%] Built target test_groups_validator /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 73%] Built target test_l3v2extendedmath_validator /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 74%] Built target test_extension_package_l3v2extendedmath /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 76%] Built target test_sbml_package_layout /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Built target test_layout_validator /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Built target test_sbml_package_multi /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Built target test_multi_validator /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 77%] Built target test_extension_package_qual /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Built target test_sbml_package_qual /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 78%] Built target test_qual_validator /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 81%] Built target test_sbml_package_render /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 82%] Built target test_render_validator /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 83%] Built target test_sbml_annotation /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 84%] Built target test_sbml_conversion /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 85%] Built target test_sbml_extension /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 87%] Built target test_sbml_math /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 95%] Built target test_sbml_sbml /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 96%] Built target test_sbml_units /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/util/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Built target test_sbml_util /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/validator/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 97%] Built target test_sbml_validator /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Built target test_sbml_xml /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Built target binding_perl_swig /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Built target binding_perl_lib /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Built target binding_python_swig /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [ 99%] Built target binding_python_lib /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target binding_ruby_swig /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target binding_ruby_lib /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target binding_r_swig /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target binding_r_lib /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Create R Package (64bit) cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML_5.20.4_R_powerpc64le-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/cmake/Modules/FindLIBSBML.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/cmake/Modules/FindLIBXML.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/cmake/Modules/FindBZ2.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/common/CompExtensionTypes.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/common/compfwd.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/extension/CompExtension.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/extension/CompModelPlugin.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/extension/CompSBasePlugin.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/CompBase.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/Deletion.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/ExternalModelDefinition.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/ListOfDeletions.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/ListOfModelDefinitions.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/ListOfPorts.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/ListOfReplacedElements.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/ListOfSubmodels.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/ModelDefinition.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/Port.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/ReplacedBy.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/ReplacedElement.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/Replacing.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/SBaseRef.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/sbml/Submodel.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/util/CompFlatteningConverter.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/util/SBMLFileResolver.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/util/SBMLResolver.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/util/SBMLResolverRegistry.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/util/SBMLUri.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/CompConsistencyValidator.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/CompSBMLError.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/CompSBMLErrorTable.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/CompUnitConsistencyValidator.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/CompValidator.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/ClassReplacements.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/CompIdBase.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/UniqueComponentIds.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/UniqueModelIds.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/UniquePortIds.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/UniquePortReferences.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/comp/validator/constraints/UnitReplacementCheck.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/common/FbcExtensionTypes.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/common/fbcfwd.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/extension/FbcExtension.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/extension/FbcModelPlugin.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/extension/FbcReactionPlugin.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/extension/FbcSBasePlugin.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/extension/FbcSpeciesPlugin.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/Association.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/FbcAnd.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/FbcAssociation.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/FbcOr.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/FluxBound.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/FluxObjective.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/GeneAssociation.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/GeneProduct.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/GeneProductAssociation.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/GeneProductRef.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/KeyValuePair.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/ListOfKeyValuePairs.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/ListOfUserDefinedConstraintComponents.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/ListOfUserDefinedConstraints.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/Objective.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/UserDefinedConstraint.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/util/CobraToFbcConverter.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/util/FbcToCobraConverter.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/util/FbcV1ToV2Converter.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/util/FbcV2ToV1Converter.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/validator/FbcConsistencyValidator.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/validator/FbcSBMLError.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/validator/FbcSBMLErrorTable.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/validator/FbcValidator.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/groups/common/GroupsExtensionTypes.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/groups/common/groupsfwd.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/groups/extension/GroupsExtension.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/groups/extension/GroupsModelPlugin.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/groups/sbml/Group.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/groups/sbml/ListOfGroups.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/groups/sbml/ListOfMembers.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/groups/sbml/Member.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/packages/groups/validator/GroupsConsistencyValidator.h -- 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Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/InitialAssignment.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/KineticLaw.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/ListOf.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/LocalParameter.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/Model.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/ModifierSpeciesReference.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/Parameter.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/Priority.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/RateRule.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/Reaction.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/Rule.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLConstructorException.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLDocument.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLError.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLErrorLog.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLErrorTable.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLNamespaces.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLReader.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLTransforms.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLTypeCodes.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLTypes.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLVisitor.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBMLWriter.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBO.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SBase.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SimpleSpeciesReference.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/Species.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SpeciesReference.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SpeciesType.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/StoichiometryMath.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/SyntaxChecker.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/Trigger.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/Unit.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/UnitDefinition.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/UnitKind.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/common/libsbml-config-common.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/common/libsbml-config-packages.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/common/libsbml-namespace.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/common/libsbml-package.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/common/libsbml-version.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/include/sbml/extension/RegisterExtensions.h -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/libsbml.so.5.20.4 -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/libsbml.so.5 -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/libsbml.so -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/cmake/sbml-targets.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/cmake/sbml-targets-release.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/cmake/sbml-config-version.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/cmake/sbml-config.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/libsbml-static.a -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/cmake/sbml-static-targets.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/cmake/sbml-static-targets-release.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/cmake/sbml-static-config-version.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/cmake/sbml-static-config.cmake -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/perl5/vendor_perl/LibSBML.pod -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/perl5/vendor_perl/LibSBML.pm -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/perl5/vendor_perl/auto/LibSBML/LibSBML.so -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsbml/_libsbml.so -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsbml.pth -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsbml/libsbml.py -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/ruby/vendor_ruby/libSBML.so Notice: the libSBML R interface must be installed separately. To install it, please execute the following shell command: R CMD INSTALL /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r/libSBML_5.20.4_R_powerpc64le-redhat-linux-gnu.tar.gz -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/libsbml/COPYING.txt -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/libsbml/FUNDING.txt -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/libsbml/LICENSE.txt -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/libsbml/NEWS.txt -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/libsbml/README.md -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/libsbml/VERSION.txt -- Installing: /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/pkgconfig/libsbml.pc make: Leaving directory '/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build' + rm -rf /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/libsbml + mkdir -p /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/R/library build/src/bindings/r/libSBML_5.20.4_R_powerpc64le-redhat-linux-gnu.tar.gz * installing *binary* package ‘libSBML’ ... * DONE (libSBML) + rm -rf /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/R/library/libSBML/R.css + install -Dm0644 src/bindings/ruby/README.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/doc/libsbml/README-ruby.txt + rm -fv /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT//usr/share/cmake/Modules/FindBZ2.cmake /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT//usr/share/cmake/Modules/FindLIBXML.cmake /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT//usr/share/cmake/Modules/FindZLIB.cmake removed '/builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT//usr/share/cmake/Modules/FindBZ2.cmake' removed '/builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT//usr/share/cmake/Modules/FindLIBXML.cmake' + /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 5.20.4-1.fc42 --unique-debug-suffix -5.20.4-1.fc42.ppc64le --unique-debug-src-base libsbml-5.20.4-1.fc42.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 find-debuginfo: starting Extracting debug info from 5 files DWARF-compressing 5 files sepdebugcrcfix: Updated 5 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libsbml-5.20.4-1.fc42.ppc64le cpio: build/src/L3Parser.cpp: Cannot stat: No such file or directory cpio: build/src/L3Parser.ypp: Cannot stat: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/libsbml-5.20.4-1.fc42.ppc64le/src/sbml/packages/comp-register.cxx is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/libsbml-5.20.4-1.fc42.ppc64le/src/sbml/packages/fbc-register.cxx is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/libsbml-5.20.4-1.fc42.ppc64le/src/sbml/packages/groups-register.cxx is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/libsbml-5.20.4-1.fc42.ppc64le/src/sbml/packages/render-register.cxx is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8 Bytecompiling .py files below /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j8 /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/libsbml-static.a: replacing with normalized version /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsbml/__pycache__/libsbml.cpython-313.pyc: rewriting with normalized contents Scanned 191 directories and 1598 files, processed 3 inodes, 2 modified (1 replaced + 1 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/libsbml-5.20.4-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.5eZ92P + umask 022 + cd /builddir/build/BUILD/libsbml-5.20.4-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ~/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build ~/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4 + CC=gcc + export CC + CXX=g++ + export CXX + cd libsbml-5.20.4 + pushd build + ctest --force-new-ctest-process -VV -E 'test_ruby_binding|test_perl_binding' UpdateCTestConfiguration from :/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/DartConfiguration.tcl Test project /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_comp_extensions_run 1: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/extension/test/test_comp_extensions 1: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/extension/test 1: Environment variables: 1: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/extension/test 1: Test timeout computed to be: 3000 1: Running suite(s): SBMLCompExtensionObjects 1: TestMultipleNamespaces 1: SBMLCompCheckConsistency 1: 100%: Checks: 14, Failures: 0, Errors: 0 1/69 Test #1: test_comp_extensions_run ...................... Passed 0.44 sec test 2 Start 2: test_comp_sbase_run 2: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test/test_comp_sbase 2: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/sbml/test 2: Environment variables: 2: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/sbml/test 2: Test timeout computed to be: 3000 2: Running suite(s): SBMLCompSBaseObjects 2: SBMLCompIdNamspace 2: SBMLCompSBaseObjects 2: comp_deletion 2: comp_externalModelDefinition 2: comp_modelDefinition 2: comp_port 2: comp_replacedBy 2: comp_replacedElement 2: comp_sBaseRef 2: comp_submodel 2: 100%: Checks: 105, Failures: 0, Errors: 0 2/69 Test #2: test_comp_sbase_run ........................... Passed 0.28 sec test 3 Start 3: test_comp_util_run 3: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test/test_comp_util 3: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/util/test 3: Environment variables: 3: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/util/test 3: Test timeout computed to be: 3000 3: Running suite(s): SBMLCompURIResolvers 3: SBMLCompLevelVersionConversion 3: SBMLCompFlatteningUnknownPackageRefs 3: SBMLCompFlatteningErrorMessages 3: SBMLCompFlatteningConverter 3: ExternalModelResolving 3: SBMLCompFlatteningNewFlags 3: SBMLCompFlatteningConverterStripPackage 3: 100%: Checks: 365, Failures: 0, Errors: 0 3/69 Test #3: test_comp_util_run ............................ Passed 5.25 sec test 4 Start 4: test_comp_validator_run 4: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/validator/test/test_comp_validator "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/test" 4: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/comp/validator/test 4: Environment variables: 4: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/test 4: Test timeout computed to be: 3000 4: 4: Validator testrunner 4: ==================== 4: using test data from : /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/comp/validator/test/test-data 4: 4: Testing General XML Consistency Constraints (20000 - 29999). 4: 100%: Checks: 280, Failures: 0 4: Testing Id Consistency Constraints (10300 - 10399). 4: 100%: Checks: 14, Failures: 0 4: Testing Unit Consistency Constraints (10500 - 10599). 4: 100%: Checks: 22, Failures: 0 4/69 Test #4: test_comp_validator_run ....................... Passed 0.78 sec test 5 Start 5: test_sbml_package_fbc_run 5: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test/test_sbml_package_fbc 5: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/extension/test 5: Environment variables: 5: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/extension/test 5: Test timeout computed to be: 3000 5: Running suite(s): FbcExtension 5: WriteFbcExtension 5: ReadFbcExtension 5: FbcAssociation 5: 100%: Checks: 38, Failures: 0, Errors: 0 5/69 Test #5: test_sbml_package_fbc_run ..................... Passed 0.29 sec test 6 Start 6: test_fbc_validator_run 6: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/validator/test/test_fbc_validator "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/test" 6: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/fbc/validator/test 6: Environment variables: 6: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/test 6: Test timeout computed to be: 3000 6: 6: Validator testrunner 6: ==================== 6: using test data from : /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/fbc/validator/test/test-data 6: 6: Testing General XML Consistency Constraints (20000 - 29999). 6: 100%: Checks: 248, Failures: 0 6: Testing Id Consistency Constraints (10300 - 10399). 6: 100%: Checks: 13, Failures: 0 6/69 Test #6: test_fbc_validator_run ........................ Passed 0.69 sec test 7 Start 7: test_extension_package_groups_run 7: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test/test_extension_package_groups 7: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/extension/test 7: Environment variables: 7: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/extension/test 7: Test timeout computed to be: 3000 7: Running suite(s): GroupsExtension 7: WriteGroupsExtension 7: ReadGroupsExtension 7: GroupsModelPlugin 7: 100%: Checks: 25, Failures: 0, Errors: 0 7/69 Test #7: test_extension_package_groups_run ............. Passed 0.16 sec test 8 Start 8: test_groups_validator_run 8: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/validator/test/test_groups_validator "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/test" 8: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/groups/validator/test 8: Environment variables: 8: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/test 8: Test timeout computed to be: 3000 8: 8: Validator testrunner 8: ==================== 8: using test data from : /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/groups/validator/test/test-data 8: 8: Testing General XML Consistency Constraints (20000 - 29999). 8: 100%: Checks: 95, Failures: 0 8: Testing Id Consistency Constraints (10300 - 10399). 8: 100%: Checks: 11, Failures: 0 8/69 Test #8: test_groups_validator_run ..................... Passed 0.16 sec test 9 Start 9: test_l3v2extendedmath_validator_run 9: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/validator/test/test_l3v2extendedmath_validator "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/test" 9: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/validator/test 9: Environment variables: 9: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/test 9: Test timeout computed to be: 3000 9: 9: Validator testrunner 9: ==================== 9: using test data from : /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/validator/test/test-data 9: 9: Testing MathML Consistency Constraints (10200 - 10299). 9: 100%: Checks: 4, Failures: 0 9: Testing Unit Consistency Constraints (10500 - 10599). 9: 100%: Checks: 6, Failures: 0 9/69 Test #9: test_l3v2extendedmath_validator_run ........... Passed 0.08 sec test 10 Start 10: test_extension_package_l3v2extendedmath_run 10: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test/test_extension_package_l3v2extendedmath 10: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/l3v2extendedmath/extension/test 10: Environment variables: 10: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/l3v2extendedmath/extension/test 10: Test timeout computed to be: 3000 10: Running suite(s): L3v2EMExtension 10: WriteL3v2EMExtension 10: ReadL3v2EMExtension 10: ReadWriteL3v2Infix 10: 100%: Checks: 18, Failures: 0, Errors: 0 10/69 Test #10: test_extension_package_l3v2extendedmath_run ... Passed 0.07 sec test 11 Start 11: test_sbml_package_layout_run 11: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test/test_sbml_package_layout 11: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/sbml/test 11: Environment variables: 11: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/sbml/test 11: Test timeout computed to be: 3000 11: Running suite(s): Point 11: Dimensions 11: BoundingBox 11: LineSegment 11: CubicBezier 11: Curve 11: GraphicalObject 11: CompartmentGlyph 11: SpeciesGlyph 11: ReactionGlyph 11: GeneralGlyph 11: ReferenceGlyph 11: SpeciesReferenceGlyph 11: TextGlyph 11: Layout 11: LayoutCreation 11: LayoutFormatter 11: SBMLHandler 11: LayoutWriting 11: 100%: Checks: 288, Failures: 0, Errors: 0 11/69 Test #11: test_sbml_package_layout_run .................. Passed 0.66 sec test 12 Start 12: test_layout_validator_run 12: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/validator/test/test_layout_validator "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/test" 12: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/layout/validator/test 12: Environment variables: 12: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/test 12: Test timeout computed to be: 3000 12: 12: Validator testrunner 12: ==================== 12: using test data from : /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/layout/validator/test/test-data 12: 12: Testing General XML Consistency Constraints (20000 - 29999). 12: 100%: Checks: 223, Failures: 0 12: Testing Id Consistency Constraints (10300 - 10399). 12: 100%: Checks: 18, Failures: 0 12/69 Test #12: test_layout_validator_run ..................... Passed 1.03 sec test 13 Start 13: test_sbml_package_multi_run 13: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test/test_sbml_package_multi 13: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/extension/test 13: Environment variables: 13: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/extension/test 13: Test timeout computed to be: 3000 13: Running suite(s): MultiExtension 13: MultiCheckConsistency 13: MultiAST 13: 100%: Checks: 18, Failures: 0, Errors: 0 13/69 Test #13: test_sbml_package_multi_run ................... Passed 0.13 sec test 14 Start 14: test_multi_validator_run 14: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/validator/test/test_multi_validator "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/test" 14: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/multi/validator/test 14: Environment variables: 14: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/test 14: Test timeout computed to be: 3000 14: 14: Validator testrunner 14: ==================== 14: using test data from : /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/multi/validator/test/test-data 14: 14: Testing MathML Consistency Constraints (10200 - 10299). 14: 100%: Checks: 5, Failures: 0 14: Testing General XML Consistency Constraints (20000 - 29999). 14: 100%: Checks: 123, Failures: 0 14: Testing Id Consistency Constraints (10300 - 10999). 14: 100%: Checks: 16, Failures: 0 14/69 Test #14: test_multi_validator_run ...................... Passed 0.20 sec test 15 Start 15: test_extension_package_qual_run 15: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test/test_extension_package_qual 15: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/extension/test 15: Environment variables: 15: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/extension/test 15: Test timeout computed to be: 3000 15: Running suite(s): QualExtension 15: WriteQualExtension 15: ReadQualExtension 15: GetAllElements 15: 100%: Checks: 20, Failures: 0, Errors: 0 15/69 Test #15: test_extension_package_qual_run ............... Passed 0.09 sec test 16 Start 16: test_sbml_package_qual_run 16: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test/test_sbml_package_qual 16: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/sbml/test 16: Environment variables: 16: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/sbml/test 16: Test timeout computed to be: 3000 16: Running suite(s): Input 16: Output 16: FunctionTerm 16: Transition 16: QualitativeSpecies 16: DefaultTerm 16: ListOfFunctionTerms 16: CopyAndClone 16: 100%: Checks: 73, Failures: 0, Errors: 0 16/69 Test #16: test_sbml_package_qual_run .................... Passed 0.20 sec test 17 Start 17: test_qual_validator_run 17: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/validator/test/test_qual_validator "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/test" 17: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/qual/validator/test 17: Environment variables: 17: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/test 17: Test timeout computed to be: 3000 17: 17: Validator testrunner 17: ==================== 17: using test data from : /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/qual/validator/test/test-data 17: 17: Testing General XML Consistency Constraints (20000 - 29999). 17: 100%: Checks: 81, Failures: 0 17: Testing Id Consistency Constraints (10300 - 10399). 17: 100%: Checks: 4, Failures: 0 17: Testing Math Consistency Constraints (10200 - 10299). 17: 100%: Checks: 3, Failures: 0 17/69 Test #17: test_qual_validator_run ....................... Passed 0.15 sec test 18 Start 18: test_sbml_package_render_run 18: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test/test_sbml_package_render 18: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/sbml/test 18: Environment variables: 18: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/sbml/test 18: Test timeout computed to be: 3000 18: Running suite(s): RenderExtension 18: RelAbsVector 18: ColorDefinition 18: GradientStop 18: RenderPoint 18: RenderCubicBezier 18: GradientBaseTest 18: LinearGradient 18: RadialGradient 18: Transformation 18: Transformation2D 18: Image 18: GraphicalPrimitive1D 18: RenderCurve 18: Text 18: GraphicalPrimitive2D 18: Rectangle 18: Ellipse 18: Polygon 18: Group 18: LineEnding 18: Style 18: GlobalStyle 18: LocalStyle 18: RenderInformationBase 18: GlobalRenderInformation 18: LocalRenderInformation 18: RenderReading 18: RenderWriting 18: 100%: Checks: 136, Failures: 0, Errors: 0 18/69 Test #18: test_sbml_package_render_run .................. Passed 0.88 sec test 19 Start 19: test_render_validator_run 19: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/validator/test/test_render_validator "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/test" 19: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/packages/render/validator/test 19: Environment variables: 19: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/test 19: Test timeout computed to be: 3000 19: 19: Validator testrunner 19: ==================== 19: using test data from : /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/packages/render/validator/test/test-data 19: 19: Testing General XML Consistency Constraints (20000 - 29999). 19: 100%: Checks: 111, Failures: 0 19/69 Test #19: test_render_validator_run ..................... Passed 0.39 sec test 20 Start 20: test_sbml_annotation_run 20: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test/test_sbml_annotation 20: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/annotation/test 20: Environment variables: 20: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/annotation/test 20: Test timeout computed to be: 3000 20: Running suite(s): CVTerms 20: CVTerms_newSetters 20: ModelHistory 20: Date_newSetters 20: ModelCreator_newSetters 20: ModelHistory_newSetters 20: CopyAndClone 20: RDFAnnotation 20: RDFAnnotation2 20: Validation 20: RDFAnnotation_C 20: L3ModelHistory 20: SyncAnnotation 20: RDFAnnotationMetaid 20: RDFAnnotationNestedCVTerm 20: RDFAnnotationV4 20: UnusualRDFAnnotation 20: 100%: Checks: 193, Failures: 0, Errors: 0 20/69 Test #20: test_sbml_annotation_run ...................... Passed 0.79 sec test 21 Start 21: test_sbml_conversion_run 21: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test/test_sbml_conversion 21: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/conversion/test 21: Environment variables: 21: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/conversion/test 21: Test timeout computed to be: 3000 21: Running suite(s): ConversionOption 21: SBMLRuleConverter 21: ConversionProperties 21: SBMLConverterRegistry 21: UnitsConverter 21: UnitsConverter2 21: UnitsConverterL2 21: InferUnitsConverter 21: StripPackageConverter 21: LevelVersionConverter 21: RateOfConverter 21: SBMLRateRuleConverter 21: 100%: Checks: 188, Failures: 0, Errors: 0 21/69 Test #21: test_sbml_conversion_run ...................... Passed 1.38 sec test 22 Start 22: test_sbml_extension_run 22: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test/test_sbml_extension 22: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/extension/test 22: Environment variables: 22: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/extension/test 22: Test timeout computed to be: 3000 22: Running suite(s): SBaseExtensionPoint 22: SBasePlugin 22: SBasePluginCreator 22: SBasePluginCreatorBase 22: SBMLDocumentPlugin 22: SBMLExtension 22: SBMLExtensionNamespaces 22: SBMLExtensionRegistry 22: TestUnknownPackages 22: 100%: Checks: 30, Failures: 0, Errors: 0 22/69 Test #22: test_sbml_extension_run ....................... Passed 0.06 sec test 23 Start 23: test_sbml_math_run 23: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test/test_sbml_math 23: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/math/test 23: Environment variables: 23: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/math/test 23: Test timeout computed to be: 3000 23: Running suite(s): ASTNode 23: FormulaFormatter 23: FormulaParser 23: L3FormulaFormatter 23: L3FormulaParser 23: L3FormulaParserC 23: FormulaTokenizer 23: ReadMathML 23: WriteMathML 23: WriteMathMLFromAST 23: test-data/mathML_1.xml 23: test-data/mathML_2.xml 23: TestValidASTNode 23: TestChildFunctions 23: TestGetValue 23: test-data/L3V2Math.xml 23: TestInferRnFunctions 23: TestDerivFunctions 23: 100%: Checks: 739, Failures: 0, Errors: 0 23/69 Test #23: test_sbml_math_run ............................ Passed 1.20 sec test 24 Start 24: test_sbml_sbml_run 24: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test/test_sbml_sbml 24: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/test 24: Environment variables: 24: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/test 24: Test timeout computed to be: 3000 24: Running suite(s): ReadSBML 24: SBMLValidator API 24: RenameIDs 24: RemoveFromParent 24: GetMultipleObjects 24: WriteSBML 24: WriteL3SBML 24: WriteL3V2SBML 24: AlgebraicRule 24: AssignmentRule 24: Compartment 24: L3_Compartment 24: Compartment_newSetters 24: CompartmentType 24: CompartmentType_newSetters 24: CompartmentVolumeRule 24: Constraint 24: Constraint_newSetters 24: Delay 24: Event 24: L3_Event 24: Event_newSetters 24: EventAssignment 24: EventAssignment_newSetters 24: FunctionDefinition 24: FunctionDefinition_newSetters 24: InitialAssignment 24: InitialAssignment_newSetters 24: KineticLaw 24: KineticLaw_newSetters 24: L3_KineticLaw 24: ListOf 24: Model 24: L3_Model 24: Model_newSetters 24: ModifierSpeciesReference 24: Parameter 24: L3_Parameter 24: L3_LocalParameter 24: Parameter_newSetters 24: ParameterRule 24: Priority 24: RateRule 24: Reaction 24: L3_Reaction 24: Reaction_newSetters 24: Rule 24: Rule_newSetters 24: SBase 24: SBase_newSetters 24: Species 24: L3_Species 24: Species_newSetters 24: SpeciesReference 24: L3_SpeciesReference 24: SpeciesReference_newSetters 24: SpeciesConcentrationRule 24: SpeciesType 24: SpeciesType_newSetters 24: StoichiometryMath 24: Trigger 24: L3Trigger 24: Unit 24: L3_Unit 24: Unit_newSetters 24: UnitDefinition 24: UnitDefinition_newSetters 24: UnitKind 24: CopyAndClone 24: SBMLConvert 24: SBMLConvertStrict 24: SBMLConvertFromL3V2 24: SBMLDocument 24: SBMLError 24: ErrorLog 24: test-data/l1v1-branch.xml 24: test-data/l1v1-units.xml 24: test-data/l1v1-rules.xml 24: test-data/l1v1-minimal.xml 24: test-data/l2v1-assignment.xml 24: test-data/l2v2-newComponents.xml 24: test-data/l2v3-all.xml 24: test-data/l2v4-new.xml 24: test-data/l3v1-new.xml 24: test-data/l2v5-all.xml 24: test-data/l3v2-all.xml 24: test-data/l3v2-no-model.xml 24: test-data/l3v2-empty-lo-1.xml 24: test-data/l3v2-empty-lo-2.xml 24: test-data/l3v2-empty-math.xml 24: test-data/l3v2-empty-event.xml 24: test-data/l3v2-empty-event2.xml 24: ConsistencyChecks 24: ParentObject 24: AncestorObject 24: InternalConsistencyChecks 24: HasReqdAtt 24: HasReqdElements 24: SBMLNamespaces 24: SyntaxChecker 24: SBMLConstructorException 24: SBMLTransforms 24: GetMultipleObjects 24: LevelCompatibility 24: SBaseIdName 24: Generic Attribute Functions 24: 100%: Checks: 1746, Failures: 0, Errors: 0 24/69 Test #24: test_sbml_sbml_run ............................ Passed 7.15 sec test 25 Start 25: test_sbml_units_run 25: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test/test_sbml_units 25: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/units/test 25: Environment variables: 25: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/units/test 25: Test timeout computed to be: 3000 25: Running suite(s): UtilsUnit 25: UtilsUnitDefinition 25: UnitFormulaFormatter 25: UnitFormulaFormatter1 25: FormulaUnitData 25: FormulaUnitDataMap 25: DerivedUnitDefinition 25: UnitFormulaFormatter2 25: CalcUnitDefinition 25: UnitFormulaFormatter3 25: DerivedUnitDefinitionUndefined 25: 100%: Checks: 178, Failures: 0, Errors: 0 25/69 Test #25: test_sbml_units_run ........................... Passed 1.24 sec test 26 Start 26: test_sbml_util_run 26: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test/test_sbml_util 26: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/util/test 26: Test timeout computed to be: 3000 26: Running suite(s): memory 26: util 26: List 26: Stack 26: StringBuffer 26: 100%: Checks: 57, Failures: 0, Errors: 0 26/69 Test #26: test_sbml_util_run ............................ Passed 0.07 sec test 27 Start 27: test_sbml_validator_run 27: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/validator/test/test_sbml_validator "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test" 27: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/validator/test 27: Test timeout computed to be: 3000 27: 27: Validator testrunner 27: ==================== 27: using test data from : /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test/test-data 27: using conversion test data from: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/validator/test/test-data-conversion 27: 27: Testing Bad XML Constraints (0000 - 10000). 27: 100%: Checks: 55, Failures: 0 27: Testing General XML Consistency Constraints (10000 - 10199). 27: 100%: Checks: 198, Failures: 0 27: Testing General MathML Consistency Constraints (10200 - 10299). 27: 100%: Checks: 518, Failures: 0 27: Testing Id Consistency Constraints (10300 - 10399). 27: 100%: Checks: 509, Failures: 0 27: Testing General Annotation Consistency Constraints (10400 - 10499). 27: 100%: Checks: 65, Failures: 0 27: Testing Unit Consistency Constraints (10500 - 10599). 27: 100%: Checks: 1172, Failures: 0 27: Testing Unit Consistency Constraints (20000 - 29999). 27: 100%: Checks: 362, Failures: 0 27: Testing Overdetermined Constraints (10600 - 10699). 27: 100%: Checks: 31, Failures: 0 27: Testing SBO Consistency Constraints (10700 - 10799). 27: 100%: Checks: 206, Failures: 0 27: Testing General Notes Consistency Constraints (10800 - 19999). 27: 100%: Checks: 92, Failures: 0 27: Testing Model Consistency Constraints (20000 - 29999). 27: 100%: Checks: 2300, Failures: 0 27: Testing L1 Compatibility Constraints (91000 - 91999). 27: 100%: Checks: 91, Failures: 0 27: Testing L2v1 Compatibility Constraints (92000 - 92999). 27: 100%: Checks: 38, Failures: 0 27: Testing L2v2 Compatibility Constraints (93000 - 93999). 27: 100%: Checks: 23, Failures: 0 27: Testing L2v3 Compatibility Constraints (94000 - 94999). 27: 100%: Checks: 22, Failures: 0 27: Testing L2v4 Compatibility Constraints (95000 - 95999). 27: 100%: Checks: 21, Failures: 0 27: Testing L3v1 Compatibility Constraints (96000 - 96999). 27: 100%: Checks: 31, Failures: 0 27: Testing L1 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L2v1 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L2v2 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L2v3 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L3v1 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing Additional SBML Constraints (99100 - 99108). 27: 100%: Checks: 31, Failures: 0 27: Testing Additional SBML Constraints (99129 - 99199). 27: 100%: Checks: 56, Failures: 0 27: Testing Additional Math Constraints (99200 - 99299). 27: 100%: Checks: 140, Failures: 0 27: Testing Additional SBML Constraints (99300 - 99399). 27: 100%: Checks: 16, Failures: 0 27: Testing Additional Annotation Constraints (99400 - 99499). 27: 100%: Checks: 28, Failures: 0 27: Testing Additional Unit Constraints (99127 - 99128). 27: 100%: Checks: 36, Failures: 0 27: Testing Additional Unit Constraints (99500 - 99599). 27: 100%: Checks: 175, Failures: 0 27: Testing Additional SBO Constraints (99700 - 99799). 27: 100%: Checks: 30, Failures: 0 27: Testing Modeling Practice Constraints (80000 - 89999). 27: 100%: Checks: 56, Failures: 0 27/69 Test #27: test_sbml_validator_run ....................... Passed 10.49 sec test 28 Start 28: test_sbml_xml_run 28: Test command: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test/test_sbml_xml 28: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/sbml/xml/test 28: Environment variables: 28: srcdir=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/sbml/xml/test 28: Test timeout computed to be: 3000 28: Running suite(s): XMLAttributes 28: CopyAndClone 28: XMLNamespaces 28: XMLTriple 28: XMLToken 28: XMLToken_newSetters 28: XMLNode 28: XMLNode_newSetters 28: XMLError 28: XMLErrorC 28: XMLErrorLog 28: XMLInputStream 28: XMLOutputStream 28: 28: XMLAttributesC 28: XMLExceptions 28: 100%: Checks: 131, Failures: 0, Errors: 0 28/69 Test #28: test_sbml_xml_run ............................. Passed 0.23 sec test 29 Start 29: test_python_binding 29: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python/test.py" "-p" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python" "-b" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/test" 29: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python 29: Test timeout computed to be: 3000 29: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/test/sbml/TestReadSBML.py:49: SyntaxWarning: invalid escape sequence '\s' 29: re_expat = re.compile('^ USE_EXPAT \s* = \s* 1', re.X) 29: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/test/sbml/TestReadSBML.py:50: SyntaxWarning: invalid escape sequence '\s' 29: re_libxml = re.compile('^ USE_LIBXML \s* = \s* 1', re.X) 29: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/test/sbml/TestReadSBML.py:51: SyntaxWarning: invalid escape sequence '\s' 29: re_xerces = re.compile('^ USE_XERCES \s* = \s* 1', re.X) 29: ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29: ..................................................................................................................................................................................................................................................................................................................................................................................... 29: ---------------------------------------------------------------------- 29: Ran 1819 tests in 0.645s 29: 29: OK 29/69 Test #29: test_python_binding ........................... Passed 2.72 sec test 30 Start 30: test_python_printversion 30: Test command: /usr/bin/python3 "-c" "import libsbml; assert libsbml.getLibSBMLDottedVersion() == '5.20.4'" "-p" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python" "-b" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/src/bindings/python/test" 30: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python 30: Environment variables: 30: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python: 30: Test timeout computed to be: 3000 30/69 Test #30: test_python_printversion ...................... Passed 0.19 sec test 31 Start 31: test_python_addCVTerms 31: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/addCVTerms.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addCVTerms.out.xml" 31: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python 31: Environment variables: 31: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python: 31: Test timeout computed to be: 3000 31/69 Test #31: test_python_addCVTerms ........................ Passed 0.29 sec test 32 Start 32: test_python_addingEvidenceCodes_1 32: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/addingEvidenceCodes_1.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addingEvidenceCodes_1.out.xml" 32: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python 32: Environment variables: 32: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python: 32: Test timeout computed to be: 3000 32/69 Test #32: test_python_addingEvidenceCodes_1 ............. Passed 0.15 sec test 33 Start 33: test_python_addingEvidenceCodes_2 33: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/addingEvidenceCodes_2.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addingEvidenceCodes_2.out.xml" 33: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python 33: Environment variables: 33: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python: 33: Test timeout computed to be: 3000 33/69 Test #33: test_python_addingEvidenceCodes_2 ............. Passed 0.18 sec test 34 Start 34: test_python_addModelHistory 34: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/addModelHistory.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addModelHistory.out.xml" 34: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python 34: Environment variables: 34: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python: 34: Test timeout computed to be: 3000 34: Status for addCreator: succeeded 34: Set created date: succeeded 34: Set modified date: succeeded 34: Set model history: unknown 34/69 Test #34: test_python_addModelHistory ................... Passed 0.16 sec test 35 Start 35: test_python_append_to_note 35: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/append_to_note.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekineticext.xml" "veq" "a new note" "append_to_note.out.xml" 35: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python 35: Environment variables: 35: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python: 35: Test timeout computed to be: 3000 35: Body before change: 35: 35:

Some notes

35: 35: 35: Body after change: 35: 35:

Some notes

a new note 35/69 Test #35: test_python_append_to_note .................... Passed 0.19 sec test 36 Start 36: test_python_appendAnnotation 36: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/appendAnnotation.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "appendAnnotation.out.xml" 36: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python 36: Environment variables: 36: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python: 36: Test timeout computed to be: 3000 36/69 Test #36: test_python_appendAnnotation .................. Passed 0.16 sec test 37 Start 37: test_python_convertSBML 37: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/convertSBML.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "convertSBML.out.xml" 37: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python 37: Environment variables: 37: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python: 37: Test timeout computed to be: 3000 37: Attempting to convert Level 3 Version 1 model to Level 3 Version 2. 37: 37: Conversion completed. 37: 37/69 Test #37: test_python_convertSBML ....................... Passed 0.21 sec test 38 Start 38: test_python_createExampleSBML 38: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/createExampleSBML.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "createExampleSBMLy.out.xml" 38: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python 38: Environment variables: 38: PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python: 38: Test timeout computed to be: 3000 38: line 1: (99505 [Warning]) In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. 38: The units of the

expression 'f(S1) * compartmentOne / t' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate.
38: 
38: Wrote file 'enzymaticreaction.xml'
38: Wrote file 'units.xml'
38: 
38: Notice: encountered 1 validation warning in model 'functionExample'.
38: 
38: Wrote file 'functiondef.xml'
38/69 Test #38: test_python_createExampleSBML .................   Passed    0.34 sec
test 39
      Start 39: test_python_createSimpleModel
39: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/createSimpleModel.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "createSimpleModel.out.xml"
39: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
39: Environment variables: 
39:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
39: Test timeout computed to be: 3000
39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: k 39: s1 39: c1 39: 39: 39: 39: 39: 39: 39: 39: 
39/69 Test #39: test_python_createSimpleModel .................   Passed    0.18 sec
test 40
      Start 40: test_python_echoSBML
40: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/echoSBML.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "echoSBML.out.xml"
40: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
40: Environment variables: 
40:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
40: Test timeout computed to be: 3000
40: [OK] Echoed /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml
40/69 Test #40: test_python_echoSBML ..........................   Passed    0.25 sec
test 41
      Start 41: test_python_evaluateCustomMath
41: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/evaluateCustomMath.py" "2*3+4" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml"
41: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
41: Environment variables: 
41:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
41: Test timeout computed to be: 3000
41: 2*3+4 = 10.0
41/69 Test #41: test_python_evaluateCustomMath ................   Passed    0.25 sec
test 42
      Start 42: test_python_getAllElementsWithNotes
42: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/getAllElementsWithNotes.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml"
42: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
42: Environment variables: 
42:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
42: Test timeout computed to be: 3000
42: 
42:             filename: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml
42:       read time (ms): 1.989990234375
42:     searching ......:
42:     search time (ms): 0.296875
42:  elements with notes: 0
42/69 Test #42: test_python_getAllElementsWithNotes ...........   Passed    0.16 sec
test 43
      Start 43: test_python_inlineInitialAssignments
43: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/inlineInitialAssignments.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "inlineInitialAssignments.out.xml"
43: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
43: Environment variables: 
43:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
43: Test timeout computed to be: 3000
43/69 Test #43: test_python_inlineInitialAssignments ..........   Passed    0.20 sec
test 44
      Start 44: test_python_printAnnotation
44: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/printAnnotation.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml"
44: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
44: Environment variables: 
44:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
44: Test timeout computed to be: 3000
44: filename: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml
44: 
44/69 Test #44: test_python_printAnnotation ...................   Passed    0.19 sec
test 45
      Start 45: test_python_printMath
45: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/printMath.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml"
45: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
45: Environment variables: 
45:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
45: Test timeout computed to be: 3000
45: 
45: Reaction 1, formula: comp * (kon * E * S - koff * ES)
45: 
45: Reaction 2, formula: comp * kcat * ES
45: 
45: 
45: 
45/69 Test #45: test_python_printMath .........................   Passed    0.17 sec
test 46
      Start 46: test_python_printRegisteredPackages
46: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/printRegisteredPackages.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "printRegisteredPackages.out.xml"
46: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
46: Environment variables: 
46:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
46: Test timeout computed to be: 3000
46: This version of LibSBML: 5.20.4 includes: 
46: 
46: 	comp
46: 	fbc
46: 	groups
46: 	layout
46: 	render
46: 	l3v2extendedmath
46: 	multi
46: 	qual
46: 
46: 
46/69 Test #46: test_python_printRegisteredPackages ...........   Passed    0.23 sec
test 47
      Start 47: test_python_printSBML
47: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/printSBML.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml"
47: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
47: Environment variables: 
47:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
47: Test timeout computed to be: 3000
47: 
47: File: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml (Level 3, version 1)
47:                  id: (empty)
47: functionDefinitions: 0
47:     unitDefinitions: 2
47:    compartmentTypes: 0
47:         specieTypes: 0
47:        compartments: 1
47:             species: 4
47:          parameters: 0
47:  initialAssignments: 0
47:               rules: 0
47:         constraints: 0
47:           reactions: 2
47:              events: 0
47: 
47: 
47/69 Test #47: test_python_printSBML .........................   Passed    0.22 sec
test 48
      Start 48: test_python_printsupported
48: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/printsupported.py"
48: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
48: Environment variables: 
48:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
48: Test timeout computed to be: 3000
48: Supported by LibSBML 5.20.4
48: 
48: 	SBML Level: 1 Version: 1
48: 	SBML Level: 1 Version: 2
48: 	SBML Level: 2 Version: 1
48: 	SBML Level: 2 Version: 2
48: 	SBML Level: 2 Version: 3
48: 	SBML Level: 2 Version: 4
48: 	SBML Level: 2 Version: 5
48: 	SBML Level: 3 Version: 1
48: 	SBML Level: 3 Version: 2
48: 
48/69 Test #48: test_python_printsupported ....................   Passed    0.18 sec
test 49
      Start 49: test_python_printUnits
49: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/printUnits.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml"
49: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
49: Environment variables: 
49:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
49: Test timeout computed to be: 3000
49: Species 0: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0)
49: Species 1: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0)
49: Species 2: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0)
49: Species 3: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0)
49: Compartment 0: litre (exponent = 1, multiplier = 1, scale = 0)
49: Reaction 0: 
49: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0)
49:         undeclared units: no
49: Reaction 1: 
49: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0)
49:         undeclared units: no
49/69 Test #49: test_python_printUnits ........................   Passed    0.17 sec
test 50
      Start 50: test_python_promoteParameters
50: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/promoteParameters.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "promoteParameters.out.xml"
50: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
50: Environment variables: 
50:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
50: Test timeout computed to be: 3000
50: [OK] wrote promoteParameters.out.xml
50/69 Test #50: test_python_promoteParameters .................   Passed    0.22 sec
test 51
      Start 51: test_python_readSBML
51: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/readSBML.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml"
51: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
51: Environment variables: 
51:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
51: Test timeout computed to be: 3000
51: 
51:             filename: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml
51:            file size: 3930
51:       read time (ms): 2.083301544189453
51:  validation error(s): 0
51: 
51/69 Test #51: test_python_readSBML ..........................   Passed    0.20 sec
test 52
      Start 52: test_python_replaceOneFD
52: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/replaceOneFD.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/functiondef.xml" "f" "reaction_1" "replaceOneFD.out.xml"
52: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
52: Environment variables: 
52:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
52: Test timeout computed to be: 3000
52/69 Test #52: test_python_replaceOneFD ......................   Passed    0.17 sec
test 53
      Start 53: test_python_setIdFromNames
53: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/setIdFromNames.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "setIdFromNames.out.xml"
53: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
53: Environment variables: 
53:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
53: Test timeout computed to be: 3000
53: 
53:             filename: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml
53:       read time (ms): 2.024658203125
53:     rename time (ms): 0.24169921875
53:      write time (ms): 2.05517578125
53: 
53/69 Test #53: test_python_setIdFromNames ....................   Passed    0.20 sec
test 54
      Start 54: test_python_setNamesFromIds
54: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/setNamesFromIds.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "setNamesFromIds.out.xml"
54: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
54: Environment variables: 
54:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
54: Test timeout computed to be: 3000
54: 
54:             filename: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml
54:       read time (ms): 2.07275390625
54:     rename time (ms): 0.37646484375
54:      write time (ms): 2.82763671875
54: 
54/69 Test #54: test_python_setNamesFromIds ...................   Passed    0.19 sec
test 55
      Start 55: test_python_unsetAnnotation
55: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/unsetAnnotation.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "unsetAnnotation.out.xml"
55: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
55: Environment variables: 
55:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
55: Test timeout computed to be: 3000
55/69 Test #55: test_python_unsetAnnotation ...................   Passed    0.19 sec
test 56
      Start 56: test_python_unsetNotes
56: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/unsetNotes.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "unsetNotes.out.xml"
56: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
56: Environment variables: 
56:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
56: Test timeout computed to be: 3000
56/69 Test #56: test_python_unsetNotes ........................   Passed    0.17 sec
test 57
      Start 57: test_python_validateSBML
57: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/validateSBML.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml"
57: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
57: Environment variables: 
57:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
57: Test timeout computed to be: 3000
57: ---------------------------------------------------------------------------
57:                  filename : /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml
57:          file size (byte) : 3930
57:            read time (ms) : 2.403975
57:         c-check time (ms) : 4.765272
57:       validation error(s) : 0
57:     (consistency error(s)): 0
57:     validation warning(s) : 0
57:   (consistency warning(s)): 0
57: ---------------------------------------------------------------------------
57: Validated 1 files, 1 valid files, 0 invalid files
57/69 Test #57: test_python_validateSBML ......................   Passed    0.22 sec
test 58
      Start 58: test_python_stringInput
58: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/stringInput.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml"
58: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
58: Environment variables: 
58:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
58: Test timeout computed to be: 3000
58: filename: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/from-spec/level-3/enzymekinetics.xml
58: 
58: 58: 58/69 Test #58: test_python_stringInput .......................   Passed    0.18 sec
test 59
      Start 59: test_python_stripPackage
59: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/stripPackage.py" "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/fbc/fbc_example1.xml" "fbc" "stripPackage.out.xml"
59: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
59: Environment variables: 
59:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
59: Test timeout computed to be: 3000
59: [OK] stripped package 'fbc' from /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/sample-models/fbc/fbc_example1.xml to stripPackage.out.xml
59/69 Test #59: test_python_stripPackage ......................   Passed    0.20 sec
test 60
      Start 60: test_python_fbc_fbc_example1
60: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/fbc/fbc_example1.py"
60: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
60: Environment variables: 
60:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
60: Test timeout computed to be: 3000
60/69 Test #60: test_python_fbc_fbc_example1 ..................   Passed    0.16 sec
test 61
      Start 61: test_python_groups_groups_example1
61: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/groups/groups_example1.py"
61: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
61: Environment variables: 
61:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
61: Test timeout computed to be: 3000
61/69 Test #61: test_python_groups_groups_example1 ............   Passed    0.16 sec
test 62
      Start 62: test_python_layout_example1_L3
62: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/layout/example1-L3.py"
62: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
62: Environment variables: 
62:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
62: Test timeout computed to be: 3000
62/69 Test #62: test_python_layout_example1_L3 ................   Passed    0.16 sec
test 63
      Start 63: test_python_layout_example1
63: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/layout/example1.py"
63: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
63: Environment variables: 
63:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
63: Test timeout computed to be: 3000
63/69 Test #63: test_python_layout_example1 ...................   Passed    0.24 sec
test 64
      Start 64: test_python_multi_multi_example1
64: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/multi/multi_example1.py"
64: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
64: Environment variables: 
64:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
64: Test timeout computed to be: 3000
64/69 Test #64: test_python_multi_multi_example1 ..............   Passed    0.19 sec
test 65
      Start 65: test_python_multi_multi_example2
65: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/multi/multi_example2.py"
65: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
65: Environment variables: 
65:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
65: Test timeout computed to be: 3000
65/69 Test #65: test_python_multi_multi_example2 ..............   Passed    0.16 sec
test 66
      Start 66: test_python_multi_multi_example3
66: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/multi/multi_example3.py"
66: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
66: Environment variables: 
66:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
66: Test timeout computed to be: 3000
66/69 Test #66: test_python_multi_multi_example3 ..............   Passed    0.18 sec
test 67
      Start 67: test_python_multi_printMulti
67: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/multi/printMulti.py"
67: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
67: Environment variables: 
67:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
67: Test timeout computed to be: 3000
67: usage: printMulti sbml-file
67/69 Test #67: test_python_multi_printMulti ..................   Passed    0.23 sec
test 68
      Start 68: test_python_qual_qual_example1
68: Test command: /usr/bin/python3 "/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/examples/python/qual/qual_example1.py"
68: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python
68: Environment variables: 
68:  PYTHONPATH=/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:/builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/python:
68: Test timeout computed to be: 3000
68/69 Test #68: test_python_qual_qual_example1 ................   Passed    0.46 sec
test 69
      Start 69: test_r_binding
69: Test command: /usr/bin/R "--slave" "-e" ".libPaths('temp');library(libSBML);cat(getLibSBMLDottedVersion() == '5.20.4')"
69: Working Directory: /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/build/src/bindings/r
69: Test timeout computed to be: 3000
69: 
69: Attaching package: ‘libSBML’
69: 
69: The following object is masked from ‘package:base’:
69: 
69:     flush
69: 
69: TRUE
69/69 Test #69: test_r_binding ................................   Passed    8.43 sec
The following tests passed:
	test_comp_extensions_run
	test_comp_sbase_run
	test_comp_util_run
	test_comp_validator_run
	test_sbml_package_fbc_run
	test_fbc_validator_run
	test_extension_package_groups_run
	test_groups_validator_run
	test_l3v2extendedmath_validator_run
	test_extension_package_l3v2extendedmath_run
	test_sbml_package_layout_run
	test_layout_validator_run
	test_sbml_package_multi_run
	test_multi_validator_run
	test_extension_package_qual_run
	test_sbml_package_qual_run
	test_qual_validator_run
	test_sbml_package_render_run
	test_render_validator_run
	test_sbml_annotation_run
	test_sbml_conversion_run
	test_sbml_extension_run
	test_sbml_math_run
	test_sbml_sbml_run
	test_sbml_units_run
	test_sbml_util_run
	test_sbml_validator_run
	test_sbml_xml_run
	test_python_binding
	test_python_printversion
	test_python_addCVTerms
	test_python_addingEvidenceCodes_1
	test_python_addingEvidenceCodes_2
	test_python_addModelHistory
	test_python_append_to_note
	test_python_appendAnnotation
	test_python_convertSBML
	test_python_createExampleSBML
	test_python_createSimpleModel
	test_python_echoSBML
	test_python_evaluateCustomMath
	test_python_getAllElementsWithNotes
	test_python_inlineInitialAssignments
	test_python_printAnnotation
	test_python_printMath
	test_python_printRegisteredPackages
	test_python_printSBML
	test_python_printsupported
	test_python_printUnits
	test_python_promoteParameters
	test_python_readSBML
	test_python_replaceOneFD
	test_python_setIdFromNames
	test_python_setNamesFromIds
	test_python_unsetAnnotation
	test_python_unsetNotes
	test_python_validateSBML
	test_python_stringInput
	test_python_stripPackage
	test_python_fbc_fbc_example1
	test_python_groups_groups_example1
	test_python_layout_example1_L3
	test_python_layout_example1
	test_python_multi_multi_example1
	test_python_multi_multi_example2
	test_python_multi_multi_example3
	test_python_multi_printMulti
	test_python_qual_qual_example1
	test_r_binding
100% tests passed, 0 tests failed out of 69
Total Test time (real) =  54.22 sec
+ popd
~/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: libsbml-5.20.4-1.fc42.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Sq55wv
+ umask 022
+ cd /builddir/build/BUILD/libsbml-5.20.4-build
+ cd libsbml-5.20.4
+ DOCDIR=/builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/doc/libsbml
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/doc/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/README-code-from-svn.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/doc/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/README.md /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/doc/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/NEWS.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/doc/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/FUNDING.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/doc/libsbml
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.GYOPk0
+ umask 022
+ cd /builddir/build/BUILD/libsbml-5.20.4-build
+ cd libsbml-5.20.4
+ LICENSEDIR=/builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/COPYING.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/LICENSE.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libsbml = 5.20.4-1.fc42 libsbml(ppc-64) = 5.20.4-1.fc42 libsbml.so.5()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Obsoletes: java-libsbml < 0:5.19.0-18 libsbml-doc < 0:5.18.0-21 libsbml-sharp < 0:5.18.0-20 python2-libsbml < 0:5.18
Processing files: libsbml-devel-5.20.4-1.fc42.ppc64le
Provides: libsbml-devel = 5.20.4-1.fc42 libsbml-devel(ppc-64) = 5.20.4-1.fc42 libsbml-static = 5.20.4-1.fc42 pkgconfig(libsbml) = 5.20.4
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config libsbml.so.5()(64bit) pkgconfig(libxml-2.0) >= 2.6.22
Processing files: python3-libsbml-5.20.4-1.fc42.ppc64le
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.mxHw5K
+ umask 022
+ cd /builddir/build/BUILD/libsbml-5.20.4-build
+ cd libsbml-5.20.4
+ LICENSEDIR=/builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/COPYING.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/LICENSE.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-libsbml = 5.20.4-1.fc42 python3-libsbml = 5.20.4-1.fc42 python3-libsbml(ppc-64) = 5.20.4-1.fc42 python3.13-libsbml = 5.20.4-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) python(abi) = 3.13 rtld(GNU_HASH)
Obsoletes: python-libsbml < 5.20.4-1.fc42
Processing files: perl-LibSBML-5.20.4-1.fc42.ppc64le
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Fd1kB5
+ umask 022
+ cd /builddir/build/BUILD/libsbml-5.20.4-build
+ cd libsbml-5.20.4
+ LICENSEDIR=/builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/COPYING.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/LICENSE.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: perl(LibSBML) perl(LibSBML::ASTBasePlugin) perl(LibSBML::ASTNode) perl(LibSBML::ASTNodeList) perl(LibSBML::ASTNodeValues_t) perl(LibSBML::AlgebraicRule) perl(LibSBML::AssignmentRule) perl(LibSBML::Association) perl(LibSBML::BindingSiteSpeciesType) perl(LibSBML::BoundingBox) perl(LibSBML::CVTerm) perl(LibSBML::CVTermList) perl(LibSBML::Callback) perl(LibSBML::CallbackRegistry) perl(LibSBML::CobraToFbcConverter) perl(LibSBML::ColorDefinition) perl(LibSBML::CompBase) perl(LibSBML::CompExtension) perl(LibSBML::CompFlatteningConverter) perl(LibSBML::CompModelPlugin) perl(LibSBML::CompPkgNamespaces) perl(LibSBML::CompSBMLDocumentPlugin) perl(LibSBML::CompSBasePlugin) perl(LibSBML::Compartment) perl(LibSBML::CompartmentGlyph) perl(LibSBML::CompartmentReference) perl(LibSBML::CompartmentType) perl(LibSBML::Constraint) perl(LibSBML::ConversionOption) perl(LibSBML::ConversionProperties) perl(LibSBML::CubicBezier) perl(LibSBML::Curve) perl(LibSBML::Date) perl(LibSBML::DateList) perl(LibSBML::DefaultTerm) perl(LibSBML::DefaultValues) perl(LibSBML::DefinitionURLRegistry) perl(LibSBML::Delay) perl(LibSBML::Deletion) perl(LibSBML::Dimensions) perl(LibSBML::ElementFilter) perl(LibSBML::Ellipse) perl(LibSBML::Event) perl(LibSBML::EventAssignment) perl(LibSBML::ExternalModelDefinition) perl(LibSBML::FbcAnd) perl(LibSBML::FbcAssociation) perl(LibSBML::FbcExtension) perl(LibSBML::FbcModelPlugin) perl(LibSBML::FbcOr) perl(LibSBML::FbcPkgNamespaces) perl(LibSBML::FbcReactionPlugin) perl(LibSBML::FbcSBMLDocumentPlugin) perl(LibSBML::FbcSBasePlugin) perl(LibSBML::FbcSpeciesPlugin) perl(LibSBML::FbcToCobraConverter) perl(LibSBML::FbcV1ToV2Converter) perl(LibSBML::FbcV2ToV1Converter) perl(LibSBML::FluxBound) perl(LibSBML::FluxObjective) perl(LibSBML::FunctionDefinition) perl(LibSBML::FunctionTerm) perl(LibSBML::GeneAssociation) perl(LibSBML::GeneProduct) perl(LibSBML::GeneProductAssociation) perl(LibSBML::GeneProductRef) perl(LibSBML::GeneralGlyph) perl(LibSBML::GlobalRenderInformation) perl(LibSBML::GlobalStyle) perl(LibSBML::GradientBase) perl(LibSBML::GradientStop) perl(LibSBML::GraphicalObject) perl(LibSBML::GraphicalPrimitive1D) perl(LibSBML::GraphicalPrimitive2D) perl(LibSBML::Group) perl(LibSBML::GroupsExtension) perl(LibSBML::GroupsModelPlugin) perl(LibSBML::GroupsPkgNamespaces) perl(LibSBML::ISBMLExtensionNamespaces) perl(LibSBML::IdList) perl(LibSBML::IdentifierTransformer) perl(LibSBML::Image) perl(LibSBML::InSpeciesTypeBond) perl(LibSBML::InitialAssignment) perl(LibSBML::Input) perl(LibSBML::IntraSpeciesReaction) perl(LibSBML::KeyValuePair) perl(LibSBML::KineticLaw) perl(LibSBML::L3ParserSettings) perl(LibSBML::L3v2extendedmathASTPlugin) perl(LibSBML::L3v2extendedmathExtension) perl(LibSBML::L3v2extendedmathPkgNamespaces) perl(LibSBML::L3v2extendedmathSBMLDocumentPlugin) perl(LibSBML::Layout) perl(LibSBML::LayoutExtension) perl(LibSBML::LayoutModelPlugin) perl(LibSBML::LayoutPkgNamespaces) perl(LibSBML::LayoutSpeciesReferencePlugin) perl(LibSBML::LineEnding) perl(LibSBML::LineSegment) perl(LibSBML::LinearGradient) perl(LibSBML::ListOf) perl(LibSBML::ListOfColorDefinitions) perl(LibSBML::ListOfCompartmentGlyphs) perl(LibSBML::ListOfCompartmentReferences) perl(LibSBML::ListOfCompartmentTypes) perl(LibSBML::ListOfCompartments) perl(LibSBML::ListOfConstraints) perl(LibSBML::ListOfCurveElements) perl(LibSBML::ListOfDeletions) perl(LibSBML::ListOfDrawables) perl(LibSBML::ListOfEventAssignments) perl(LibSBML::ListOfEvents) perl(LibSBML::ListOfExternalModelDefinitions) perl(LibSBML::ListOfFbcAssociations) perl(LibSBML::ListOfFluxBounds) perl(LibSBML::ListOfFluxObjectives) perl(LibSBML::ListOfFunctionDefinitions) perl(LibSBML::ListOfFunctionTerms) perl(LibSBML::ListOfGeneAssociations) perl(LibSBML::ListOfGeneProducts) perl(LibSBML::ListOfGlobalRenderInformation) perl(LibSBML::ListOfGlobalStyles) perl(LibSBML::ListOfGradientDefinitions) perl(LibSBML::ListOfGradientStops) perl(LibSBML::ListOfGraphicalObjects) perl(LibSBML::ListOfGroups) perl(LibSBML::ListOfInSpeciesTypeBonds) perl(LibSBML::ListOfInitialAssignments) perl(LibSBML::ListOfInputs) perl(LibSBML::ListOfKeyValuePairs) perl(LibSBML::ListOfLayouts) perl(LibSBML::ListOfLineEndings) perl(LibSBML::ListOfLineSegments) perl(LibSBML::ListOfLocalParameters) perl(LibSBML::ListOfLocalRenderInformation) perl(LibSBML::ListOfLocalStyles) perl(LibSBML::ListOfMembers) perl(LibSBML::ListOfModelDefinitions) perl(LibSBML::ListOfMultiSpeciesTypes) perl(LibSBML::ListOfObjectives) perl(LibSBML::ListOfOutputs) perl(LibSBML::ListOfOutwardBindingSites) perl(LibSBML::ListOfParameters) perl(LibSBML::ListOfPorts) perl(LibSBML::ListOfPossibleSpeciesFeatureValues) perl(LibSBML::ListOfQualitativeSpecies) perl(LibSBML::ListOfReactionGlyphs) perl(LibSBML::ListOfReactions) perl(LibSBML::ListOfReferenceGlyphs) perl(LibSBML::ListOfReplacedElements) perl(LibSBML::ListOfRules) perl(LibSBML::ListOfSpecies) perl(LibSBML::ListOfSpeciesFeatureTypes) perl(LibSBML::ListOfSpeciesFeatureValues) perl(LibSBML::ListOfSpeciesFeatures) perl(LibSBML::ListOfSpeciesGlyphs) perl(LibSBML::ListOfSpeciesReferenceGlyphs) perl(LibSBML::ListOfSpeciesReferences) perl(LibSBML::ListOfSpeciesTypeComponentIndexes) perl(LibSBML::ListOfSpeciesTypeComponentMapInProducts) perl(LibSBML::ListOfSpeciesTypeInstances) perl(LibSBML::ListOfSpeciesTypes) perl(LibSBML::ListOfSubmodels) perl(LibSBML::ListOfTextGlyphs) perl(LibSBML::ListOfTransitions) perl(LibSBML::ListOfUnitDefinitions) perl(LibSBML::ListOfUnits) perl(LibSBML::ListOfUserDefinedConstraintComponents) perl(LibSBML::ListOfUserDefinedConstraints) perl(LibSBML::LocalParameter) perl(LibSBML::LocalRenderInformation) perl(LibSBML::LocalStyle) perl(LibSBML::MathFilter) perl(LibSBML::Member) perl(LibSBML::Model) perl(LibSBML::ModelCreator) perl(LibSBML::ModelCreatorList) perl(LibSBML::ModelDefinition) perl(LibSBML::ModelHistory) perl(LibSBML::ModifierSpeciesReference) perl(LibSBML::MultiASTPlugin) perl(LibSBML::MultiCompartmentPlugin) perl(LibSBML::MultiExtension) perl(LibSBML::MultiListOfReactionsPlugin) perl(LibSBML::MultiModelPlugin) perl(LibSBML::MultiPkgNamespaces) perl(LibSBML::MultiSBMLDocumentPlugin) perl(LibSBML::MultiSimpleSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesPlugin) perl(LibSBML::MultiSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesType) perl(LibSBML::OFStream) perl(LibSBML::OStream) perl(LibSBML::OStringStream) perl(LibSBML::Objective) perl(LibSBML::Output) perl(LibSBML::OutwardBindingSite) perl(LibSBML::Parameter) perl(LibSBML::Point) perl(LibSBML::Polygon) perl(LibSBML::Port) perl(LibSBML::PossibleSpeciesFeatureValue) perl(LibSBML::Priority) perl(LibSBML::QualExtension) perl(LibSBML::QualModelPlugin) perl(LibSBML::QualPkgNamespaces) perl(LibSBML::QualitativeSpecies) perl(LibSBML::RDFAnnotationParser) perl(LibSBML::RadialGradient) perl(LibSBML::RateRule) perl(LibSBML::Reaction) perl(LibSBML::ReactionGlyph) perl(LibSBML::Rectangle) perl(LibSBML::ReferenceGlyph) perl(LibSBML::RelAbsVector) perl(LibSBML::RenderCubicBezier) perl(LibSBML::RenderCurve) perl(LibSBML::RenderExtension) perl(LibSBML::RenderGraphicalObjectPlugin) perl(LibSBML::RenderGroup) perl(LibSBML::RenderInformationBase) perl(LibSBML::RenderLayoutPlugin) perl(LibSBML::RenderListOfLayoutsPlugin) perl(LibSBML::RenderPkgNamespaces) perl(LibSBML::RenderPoint) perl(LibSBML::ReplacedBy) perl(LibSBML::ReplacedElement) perl(LibSBML::Replacing) perl(LibSBML::Rule) perl(LibSBML::SBMLConstructorException) perl(LibSBML::SBMLConverter) perl(LibSBML::SBMLConverterRegistry) perl(LibSBML::SBMLDocument) perl(LibSBML::SBMLDocumentPlugin) perl(LibSBML::SBMLError) perl(LibSBML::SBMLErrorLog) perl(LibSBML::SBMLExtension) perl(LibSBML::SBMLExtensionException) perl(LibSBML::SBMLExtensionRegistry) perl(LibSBML::SBMLExternalValidator) perl(LibSBML::SBMLFileResolver) perl(LibSBML::SBMLFunctionDefinitionConverter) perl(LibSBML::SBMLIdConverter) perl(LibSBML::SBMLInferUnitsConverter) perl(LibSBML::SBMLInitialAssignmentConverter) perl(LibSBML::SBMLLevel1Version1Converter) perl(LibSBML::SBMLLevelVersionConverter) perl(LibSBML::SBMLLocalParameterConverter) perl(LibSBML::SBMLNamespaces) perl(LibSBML::SBMLNamespacesList) perl(LibSBML::SBMLReactionConverter) perl(LibSBML::SBMLReader) perl(LibSBML::SBMLResolver) perl(LibSBML::SBMLResolverRegistry) perl(LibSBML::SBMLRuleConverter) perl(LibSBML::SBMLStripPackageConverter) perl(LibSBML::SBMLTransforms) perl(LibSBML::SBMLUnitsConverter) perl(LibSBML::SBMLUri) perl(LibSBML::SBMLValidator) perl(LibSBML::SBMLWriter) perl(LibSBML::SBO) perl(LibSBML::SBase) perl(LibSBML::SBaseExtensionPoint) perl(LibSBML::SBaseList) perl(LibSBML::SBasePlugin) perl(LibSBML::SBaseRef) perl(LibSBML::SimpleSpeciesReference) perl(LibSBML::Species) perl(LibSBML::SpeciesFeature) perl(LibSBML::SpeciesFeatureType) perl(LibSBML::SpeciesFeatureValue) perl(LibSBML::SpeciesGlyph) perl(LibSBML::SpeciesReference) perl(LibSBML::SpeciesReferenceGlyph) perl(LibSBML::SpeciesType) perl(LibSBML::SpeciesTypeComponentIndex) perl(LibSBML::SpeciesTypeComponentMapInProduct) perl(LibSBML::SpeciesTypeInstance) perl(LibSBML::StoichiometryMath) perl(LibSBML::StringSet) perl(LibSBML::Style) perl(LibSBML::SubListOfSpeciesFeatures) perl(LibSBML::Submodel) perl(LibSBML::SyntaxChecker) perl(LibSBML::Text) perl(LibSBML::TextGlyph) perl(LibSBML::Transformation) perl(LibSBML::Transformation2D) perl(LibSBML::Transition) perl(LibSBML::Trigger) perl(LibSBML::Unit) perl(LibSBML::UnitDefinition) perl(LibSBML::UserDefinedConstraint) perl(LibSBML::UserDefinedConstraintComponent) perl(LibSBML::XMLAttributes) perl(LibSBML::XMLConstructorException) perl(LibSBML::XMLError) perl(LibSBML::XMLErrorLog) perl(LibSBML::XMLInputStream) perl(LibSBML::XMLNamespaces) perl(LibSBML::XMLNode) perl(LibSBML::XMLOutputStream) perl(LibSBML::XMLOwningOutputFileStream) perl(LibSBML::XMLOwningOutputStringStream) perl(LibSBML::XMLToken) perl(LibSBML::XMLTriple) perl(LibSBML::double_array) perl(LibSBML::int_array) perl(LibSBMLc) perl-LibSBML = 5.20.4-1.fc42 perl-LibSBML(ppc-64) = 5.20.4-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.1()(64bit) libperl.so.5.40()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) perl(:MODULE_COMPAT_5.40.0) perl(DynaLoader) perl(Exporter) perl(base) perl(overload) perl(vars) perl-libs rtld(GNU_HASH)
Processing files: ruby-SBML-5.20.4-1.fc42.ppc64le
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.xaYa3H
+ umask 022
+ cd /builddir/build/BUILD/libsbml-5.20.4-build
+ cd libsbml-5.20.4
+ LICENSEDIR=/builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/COPYING.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/LICENSE.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libSBML.so()(64bit) ruby(SBML) = 5.20.4 ruby-SBML = 5.20.4-1.fc42 ruby-SBML(ppc-64) = 5.20.4-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.1()(64bit) libruby.so.3.3()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: R-libSBML-5.20.4-1.fc42.ppc64le
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.nMqvqr
+ umask 022
+ cd /builddir/build/BUILD/libsbml-5.20.4-build
+ cd libsbml-5.20.4
+ LICENSEDIR=/builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/COPYING.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ cp -pr /builddir/build/BUILD/libsbml-5.20.4-build/libsbml-5.20.4/LICENSE.txt /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT/usr/share/licenses/libsbml
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: R(libSBML) = 5.20.4 R-libSBML = 5.20.4-1.fc42 R-libSBML(ppc-64) = 5.20.4-1.fc42 libSBML.so()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: R(ABI) = 4.4 R(methods) R-core >= 1.8.0 libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: libsbml-debugsource-5.20.4-1.fc42.ppc64le
Provides: libsbml-debugsource = 5.20.4-1.fc42 libsbml-debugsource(ppc-64) = 5.20.4-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: libsbml-debuginfo-5.20.4-1.fc42.ppc64le
Provides: debuginfo(build-id) = d0965035e5c052a8fc2ba735c503aa84bcbcb6d9 libsbml-debuginfo = 5.20.4-1.fc42 libsbml-debuginfo(ppc-64) = 5.20.4-1.fc42 libsbml.so.5.20.4-5.20.4-1.fc42.ppc64le.debug()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsbml-debugsource(ppc-64) = 5.20.4-1.fc42
Processing files: python3-libsbml-debuginfo-5.20.4-1.fc42.ppc64le
Provides: debuginfo(build-id) = ccc4f5c850efabe4a12d3d3260401e0a29153941 python-libsbml-debuginfo = 5.20.4-1.fc42 python3-libsbml-debuginfo = 5.20.4-1.fc42 python3-libsbml-debuginfo(ppc-64) = 5.20.4-1.fc42 python3.13-libsbml-debuginfo = 5.20.4-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsbml-debugsource(ppc-64) = 5.20.4-1.fc42
Processing files: perl-LibSBML-debuginfo-5.20.4-1.fc42.ppc64le
Provides: debuginfo(build-id) = a7baae1c18b27fa423a00937abe231cd41b5b582 perl-LibSBML-debuginfo = 5.20.4-1.fc42 perl-LibSBML-debuginfo(ppc-64) = 5.20.4-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsbml-debugsource(ppc-64) = 5.20.4-1.fc42
Processing files: ruby-SBML-debuginfo-5.20.4-1.fc42.ppc64le
Provides: debuginfo(build-id) = 06d08e82247601a0c4f0a6de06b833789235447c libSBML.so-5.20.4-1.fc42.ppc64le.debug()(64bit) ruby-SBML-debuginfo = 5.20.4-1.fc42 ruby-SBML-debuginfo(ppc-64) = 5.20.4-1.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsbml-debugsource(ppc-64) = 5.20.4-1.fc42
Processing files: R-libSBML-debuginfo-5.20.4-1.fc42.ppc64le
Provides: R-libSBML-debuginfo = 5.20.4-1.fc42 R-libSBML-debuginfo(ppc-64) = 5.20.4-1.fc42 debuginfo(build-id) = 6757b746b86f24b6804f5c525d2b6bfae7551e91 libSBML.so-5.20.4-1.fc42.ppc64le.debug()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsbml-debugsource(ppc-64) = 5.20.4-1.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/libsbml-5.20.4-build/BUILDROOT
Wrote: /builddir/build/RPMS/python3-libsbml-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/libsbml-devel-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-libSBML-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/libsbml-debugsource-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/perl-LibSBML-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/libsbml-debuginfo-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-libSBML-debuginfo-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/libsbml-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/ruby-SBML-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/python3-libsbml-debuginfo-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/perl-LibSBML-debuginfo-5.20.4-1.fc42.ppc64le.rpm
Wrote: /builddir/build/RPMS/ruby-SBML-debuginfo-5.20.4-1.fc42.ppc64le.rpm
Child return code was: 0