Mock Version: 6.0 Mock Version: 6.0 Mock Version: 6.0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/f40-build-58146751-6562743/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'cb3c8a58a31b49a0bb0e3252f19793fc', '-D', '/var/lib/mock/f40-build-58146751-6562743/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/f40-build-58146751-6562743/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '8de268a78f204d3b8f8100159414949f', '-D', '/var/lib/mock/f40-build-58146751-6562743/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wskBPD + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf netpyne-1.0.7 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/netpyne-1.0.7.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd netpyne-1.0.7 + rm -rf /builddir/build/BUILD/netpyne-1.0.7-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/netpyne-1.0.7-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/767.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -e 's/"future",//' -i setup.py + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.u8FkTl + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.3) running egg_info creating netpyne.egg-info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt writing manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/f40-build-58146751-6562743/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'aa7ad79260ec4094872c6286998eea1f', '-D', '/var/lib/mock/f40-build-58146751-6562743/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.u61atg + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.3) running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.7/netpyne-1.0.7.dist-info' Handling numpy from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: numpy Handling scipy from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: scipy Handling matplotlib from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: matplotlib Handling matplotlib-scalebar from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: matplotlib-scalebar Handling pandas from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: pandas Handling bokeh from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: bokeh Handling schema from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: schema Handling lfpykit from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: lfpykit Handling tqdm from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: tqdm + cat /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires + rm -rfv netpyne-1.0.7.dist-info/ removed 'netpyne-1.0.7.dist-info/top_level.txt' removed 'netpyne-1.0.7.dist-info/METADATA' removed 'netpyne-1.0.7.dist-info/LICENSE' removed directory 'netpyne-1.0.7.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/f40-build-58146751-6562743/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'c597b3dcabb54568a045e4e69f9a0ed3', '-D', '/var/lib/mock/f40-build-58146751-6562743/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.q5k2Jk + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.3) running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.7/netpyne-1.0.7.dist-info' Handling numpy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling scipy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: scipy (installed: scipy 1.11.3) Handling matplotlib from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib (installed: matplotlib 3.8.4) Handling matplotlib-scalebar from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib-scalebar (installed: matplotlib-scalebar 0.9.0) Handling pandas from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: pandas (installed: pandas 2.2.1) Handling bokeh from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: bokeh (installed: bokeh 2.3.0) Handling schema from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: schema (installed: schema 0.7.5) Handling lfpykit from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: lfpykit (installed: lfpykit 0.5.1) Handling tqdm from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: tqdm (installed: tqdm 4.67.1) + cat /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires + rm -rfv netpyne-1.0.7.dist-info/ removed 'netpyne-1.0.7.dist-info/top_level.txt' removed 'netpyne-1.0.7.dist-info/METADATA' removed 'netpyne-1.0.7.dist-info/LICENSE' removed directory 'netpyne-1.0.7.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target x86_64 /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/f40-build-58146751-6562743/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'aaaa34a540d84cb588f8615a0cb7aa05', '-D', '/var/lib/mock/f40-build-58146751-6562743/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6qznbsda:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target x86_64 /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1727740800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.XpPMDQ + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.3) running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.7/netpyne-1.0.7.dist-info' Handling numpy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling scipy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: scipy (installed: scipy 1.11.3) Handling matplotlib from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib (installed: matplotlib 3.8.4) Handling matplotlib-scalebar from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib-scalebar (installed: matplotlib-scalebar 0.9.0) Handling pandas from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: pandas (installed: pandas 2.2.1) Handling bokeh from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: bokeh (installed: bokeh 2.3.0) Handling schema from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: schema (installed: schema 0.7.5) Handling lfpykit from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: lfpykit (installed: lfpykit 0.5.1) Handling tqdm from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: tqdm (installed: tqdm 4.67.1) + cat /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-buildrequires + rm -rfv netpyne-1.0.7.dist-info/ removed 'netpyne-1.0.7.dist-info/top_level.txt' removed 'netpyne-1.0.7.dist-info/METADATA' removed 'netpyne-1.0.7.dist-info/LICENSE' removed directory 'netpyne-1.0.7.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.zjYVJp + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.7 + mkdir -p /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir Processing /builddir/build/BUILD/netpyne-1.0.7 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-stil4439/netpyne.egg-info writing /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-stil4439/netpyne.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-stil4439/netpyne.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-stil4439/netpyne.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-stil4439/netpyne.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-stil4439/netpyne.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-stil4439/netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-stil4439/netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-modern-metadata-stil4439/netpyne-1.0.7.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: netpyne Building wheel for netpyne (pyproject.toml): started Running command Building wheel for netpyne (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/netpyne copying netpyne/__init__.py -> build/lib/netpyne creating build/lib/netpyne/analysis copying netpyne/analysis/__init__.py -> build/lib/netpyne/analysis copying netpyne/analysis/csd.py -> build/lib/netpyne/analysis copying netpyne/analysis/dipole.py -> build/lib/netpyne/analysis copying netpyne/analysis/filter.py -> build/lib/netpyne/analysis copying netpyne/analysis/info.py -> build/lib/netpyne/analysis copying netpyne/analysis/interactive.py -> build/lib/netpyne/analysis copying netpyne/analysis/lfp.py -> build/lib/netpyne/analysis copying netpyne/analysis/lfp_orig.py -> build/lib/netpyne/analysis copying netpyne/analysis/mapping.py -> build/lib/netpyne/analysis copying netpyne/analysis/network.py -> build/lib/netpyne/analysis copying netpyne/analysis/rxd.py -> build/lib/netpyne/analysis copying netpyne/analysis/spikes.py -> build/lib/netpyne/analysis copying netpyne/analysis/spikes_legacy.py -> build/lib/netpyne/analysis copying netpyne/analysis/tools.py -> build/lib/netpyne/analysis copying netpyne/analysis/traces.py -> build/lib/netpyne/analysis copying netpyne/analysis/utils.py -> build/lib/netpyne/analysis copying netpyne/analysis/wrapper.py -> build/lib/netpyne/analysis creating build/lib/netpyne/batch copying netpyne/batch/__init__.py -> build/lib/netpyne/batch copying netpyne/batch/asd_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/batch.py -> build/lib/netpyne/batch copying netpyne/batch/evol.py -> build/lib/netpyne/batch copying netpyne/batch/grid.py -> build/lib/netpyne/batch copying netpyne/batch/optuna_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/sbi_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/utils.py -> build/lib/netpyne/batch creating build/lib/netpyne/batchtools copying netpyne/batchtools/__init__.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/analysis.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/comm.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/evol.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/header.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/runners.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/search.py -> build/lib/netpyne/batchtools copying netpyne/batchtools/submits.py -> build/lib/netpyne/batchtools creating build/lib/netpyne/cell copying netpyne/cell/NML2Cell.py -> build/lib/netpyne/cell copying netpyne/cell/NML2SpikeSource.py -> build/lib/netpyne/cell copying netpyne/cell/__init__.py -> build/lib/netpyne/cell copying netpyne/cell/cell.py -> build/lib/netpyne/cell copying netpyne/cell/compartCell.py -> build/lib/netpyne/cell copying netpyne/cell/inputs.py -> build/lib/netpyne/cell copying netpyne/cell/pointCell.py -> build/lib/netpyne/cell creating build/lib/netpyne/conversion copying netpyne/conversion/__init__.py -> build/lib/netpyne/conversion copying netpyne/conversion/excel.py -> build/lib/netpyne/conversion copying netpyne/conversion/neuromlFormat.py -> build/lib/netpyne/conversion copying netpyne/conversion/neuronPyHoc.py -> build/lib/netpyne/conversion copying netpyne/conversion/pythonScript.py -> build/lib/netpyne/conversion copying netpyne/conversion/sonataImport.py -> build/lib/netpyne/conversion creating build/lib/netpyne/metadata copying netpyne/metadata/__init__.py -> build/lib/netpyne/metadata copying netpyne/metadata/api.py -> build/lib/netpyne/metadata copying netpyne/metadata/metadata.py -> build/lib/netpyne/metadata creating build/lib/netpyne/network copying netpyne/network/__init__.py -> build/lib/netpyne/network copying netpyne/network/conn.py -> build/lib/netpyne/network copying netpyne/network/modify.py -> build/lib/netpyne/network copying netpyne/network/netrxd.py -> build/lib/netpyne/network copying netpyne/network/network.py -> build/lib/netpyne/network copying netpyne/network/pop.py -> build/lib/netpyne/network copying netpyne/network/shape.py -> build/lib/netpyne/network copying netpyne/network/stim.py -> build/lib/netpyne/network copying netpyne/network/subconn.py -> build/lib/netpyne/network creating build/lib/netpyne/plotting copying netpyne/plotting/__init__.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotCSD.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPLocations.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPSpectrogram.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotRaster.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotShape.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotSpikeFreq.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotSpikeHist.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotTimeSeries.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotTimeSeriesPSD.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotter.py -> build/lib/netpyne/plotting creating build/lib/netpyne/sim copying netpyne/sim/__init__.py -> build/lib/netpyne/sim copying netpyne/sim/gather.py -> build/lib/netpyne/sim copying netpyne/sim/load.py -> build/lib/netpyne/sim copying netpyne/sim/run.py -> build/lib/netpyne/sim copying netpyne/sim/save.py -> build/lib/netpyne/sim copying netpyne/sim/setup.py -> build/lib/netpyne/sim copying netpyne/sim/utils.py -> build/lib/netpyne/sim copying netpyne/sim/validator.py -> build/lib/netpyne/sim copying netpyne/sim/wrappers.py -> build/lib/netpyne/sim creating build/lib/netpyne/specs copying netpyne/specs/__init__.py -> build/lib/netpyne/specs copying netpyne/specs/dicts.py -> build/lib/netpyne/specs copying netpyne/specs/netParams.py -> build/lib/netpyne/specs copying netpyne/specs/simConfig.py -> build/lib/netpyne/specs copying netpyne/specs/utils.py -> build/lib/netpyne/specs creating build/lib/netpyne/support copying netpyne/support/__init__.py -> build/lib/netpyne/support copying netpyne/support/bsmart.py -> build/lib/netpyne/support copying netpyne/support/filter.py -> build/lib/netpyne/support copying netpyne/support/morlet.py -> build/lib/netpyne/support copying netpyne/support/morphology.py -> build/lib/netpyne/support copying netpyne/support/nml_reader.py -> build/lib/netpyne/support copying netpyne/support/recxelectrode.py -> build/lib/netpyne/support copying netpyne/support/scalebar.py -> build/lib/netpyne/support copying netpyne/support/stackedBarGraph.py -> build/lib/netpyne/support creating build/lib/netpyne/tests copying netpyne/tests/__init__.py -> build/lib/netpyne/tests copying netpyne/tests/checks.py -> build/lib/netpyne/tests copying netpyne/tests/tests.py -> build/lib/netpyne/tests copying netpyne/tests/validate_tests.py -> build/lib/netpyne/tests installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/netpyne copying build/lib/netpyne/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne creating build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/csd.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/dipole.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/filter.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/info.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/interactive.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/lfp.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/lfp_orig.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/mapping.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/network.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/rxd.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/spikes.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/spikes_legacy.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/tools.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/traces.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/wrapper.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis creating build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/asd_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/batch.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/evol.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/grid.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/optuna_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/sbi_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/batch creating build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/analysis.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/comm.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/evol.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/header.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/runners.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/search.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools copying build/lib/netpyne/batchtools/submits.py -> build/bdist.linux-x86_64/wheel/netpyne/batchtools creating build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/NML2Cell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/NML2SpikeSource.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/cell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/compartCell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/inputs.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/pointCell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell creating build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/excel.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/neuromlFormat.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/neuronPyHoc.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/pythonScript.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/sonataImport.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion creating build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/api.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/metadata.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata creating build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/conn.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/modify.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/netrxd.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/network.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/pop.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/shape.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/stim.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/subconn.py -> build/bdist.linux-x86_64/wheel/netpyne/network creating build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotCSD.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPLocations.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPSpectrogram.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotRaster.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotShape.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotSpikeFreq.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotSpikeHist.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotTimeSeries.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotTimeSeriesPSD.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotter.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting creating build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/gather.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/load.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/run.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/save.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/setup.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/validator.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/wrappers.py -> build/bdist.linux-x86_64/wheel/netpyne/sim creating build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/dicts.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/netParams.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/simConfig.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/specs creating build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/bsmart.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/filter.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/morlet.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/morphology.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/nml_reader.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/recxelectrode.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/scalebar.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/stackedBarGraph.py -> build/bdist.linux-x86_64/wheel/netpyne/support creating build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/checks.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/tests.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/validate_tests.py -> build/bdist.linux-x86_64/wheel/netpyne/tests running install_egg_info running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Copying netpyne.egg-info to build/bdist.linux-x86_64/wheel/netpyne-1.0.7-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/netpyne-1.0.7.dist-info/WHEEL creating '/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir/pip-wheel-h6isx8pn/.tmp-u6fmu7j5/netpyne-1.0.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'netpyne/__init__.py' adding 'netpyne/analysis/__init__.py' adding 'netpyne/analysis/csd.py' adding 'netpyne/analysis/dipole.py' adding 'netpyne/analysis/filter.py' adding 'netpyne/analysis/info.py' adding 'netpyne/analysis/interactive.py' adding 'netpyne/analysis/lfp.py' adding 'netpyne/analysis/lfp_orig.py' adding 'netpyne/analysis/mapping.py' adding 'netpyne/analysis/network.py' adding 'netpyne/analysis/rxd.py' adding 'netpyne/analysis/spikes.py' adding 'netpyne/analysis/spikes_legacy.py' adding 'netpyne/analysis/tools.py' adding 'netpyne/analysis/traces.py' adding 'netpyne/analysis/utils.py' adding 'netpyne/analysis/wrapper.py' adding 'netpyne/batch/__init__.py' adding 'netpyne/batch/asd_parallel.py' adding 'netpyne/batch/batch.py' adding 'netpyne/batch/evol.py' adding 'netpyne/batch/grid.py' adding 'netpyne/batch/optuna_parallel.py' adding 'netpyne/batch/sbi_parallel.py' adding 'netpyne/batch/utils.py' adding 'netpyne/batchtools/__init__.py' adding 'netpyne/batchtools/analysis.py' adding 'netpyne/batchtools/comm.py' adding 'netpyne/batchtools/evol.py' adding 'netpyne/batchtools/header.py' adding 'netpyne/batchtools/runners.py' adding 'netpyne/batchtools/search.py' adding 'netpyne/batchtools/submits.py' adding 'netpyne/cell/NML2Cell.py' adding 'netpyne/cell/NML2SpikeSource.py' adding 'netpyne/cell/__init__.py' adding 'netpyne/cell/cell.py' adding 'netpyne/cell/compartCell.py' adding 'netpyne/cell/inputs.py' adding 'netpyne/cell/pointCell.py' adding 'netpyne/conversion/__init__.py' adding 'netpyne/conversion/excel.py' adding 'netpyne/conversion/neuromlFormat.py' adding 'netpyne/conversion/neuronPyHoc.py' adding 'netpyne/conversion/pythonScript.py' adding 'netpyne/conversion/sonataImport.py' adding 'netpyne/metadata/__init__.py' adding 'netpyne/metadata/api.py' adding 'netpyne/metadata/metadata.py' adding 'netpyne/network/__init__.py' adding 'netpyne/network/conn.py' adding 'netpyne/network/modify.py' adding 'netpyne/network/netrxd.py' adding 'netpyne/network/network.py' adding 'netpyne/network/pop.py' adding 'netpyne/network/shape.py' adding 'netpyne/network/stim.py' adding 'netpyne/network/subconn.py' adding 'netpyne/plotting/__init__.py' adding 'netpyne/plotting/plotCSD.py' adding 'netpyne/plotting/plotLFPLocations.py' adding 'netpyne/plotting/plotLFPSpectrogram.py' adding 'netpyne/plotting/plotRaster.py' adding 'netpyne/plotting/plotShape.py' adding 'netpyne/plotting/plotSpikeFreq.py' adding 'netpyne/plotting/plotSpikeHist.py' adding 'netpyne/plotting/plotTimeSeries.py' adding 'netpyne/plotting/plotTimeSeriesPSD.py' adding 'netpyne/plotting/plotter.py' adding 'netpyne/sim/__init__.py' adding 'netpyne/sim/gather.py' adding 'netpyne/sim/load.py' adding 'netpyne/sim/run.py' adding 'netpyne/sim/save.py' adding 'netpyne/sim/setup.py' adding 'netpyne/sim/utils.py' adding 'netpyne/sim/validator.py' adding 'netpyne/sim/wrappers.py' adding 'netpyne/specs/__init__.py' adding 'netpyne/specs/dicts.py' adding 'netpyne/specs/netParams.py' adding 'netpyne/specs/simConfig.py' adding 'netpyne/specs/utils.py' adding 'netpyne/support/__init__.py' adding 'netpyne/support/bsmart.py' adding 'netpyne/support/filter.py' adding 'netpyne/support/morlet.py' adding 'netpyne/support/morphology.py' adding 'netpyne/support/nml_reader.py' adding 'netpyne/support/recxelectrode.py' adding 'netpyne/support/scalebar.py' adding 'netpyne/support/stackedBarGraph.py' adding 'netpyne/tests/__init__.py' adding 'netpyne/tests/checks.py' adding 'netpyne/tests/tests.py' adding 'netpyne/tests/validate_tests.py' adding 'netpyne-1.0.7.dist-info/LICENSE' adding 'netpyne-1.0.7.dist-info/METADATA' adding 'netpyne-1.0.7.dist-info/WHEEL' adding 'netpyne-1.0.7.dist-info/top_level.txt' adding 'netpyne-1.0.7.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for netpyne (pyproject.toml): finished with status 'done' Created wheel for netpyne: filename=netpyne-1.0.7-py3-none-any.whl size=416146 sha256=e358426f50ea74e5475a5a920b14952280746de5e9fc209192eaf8a0b56362ff Stored in directory: /builddir/.cache/pip/wheels/b3/13/5c/60f220ea9b14acc9de1ff836fffe9229d735340582e0bb5919 Successfully built netpyne + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.YvIoZv + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.7 ++ ls /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir/netpyne-1.0.7-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=netpyne==1.0.7 + '[' -z netpyne==1.0.7 ']' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir netpyne==1.0.7 Using pip 23.3.2 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/netpyne-1.0.7/pyproject-wheeldir Processing ./pyproject-wheeldir/netpyne-1.0.7-py3-none-any.whl Installing collected packages: netpyne Successfully installed netpyne-1.0.7 + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 --record /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/RECORD --output /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne-1.0.7.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-record --prefix /usr -l netpyne + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j6 Bytecompiling .py files below /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12 using python3.12 /usr/lib/python3.12/site-packages/netpyne/analysis/dipole.py:127: SyntaxWarning: invalid escape sequence '\c' /usr/lib/python3.12/site-packages/netpyne/analysis/dipole.py:127: SyntaxWarning: invalid escape sequence '\c' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:342: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:353: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:373: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:342: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:353: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/lfp_orig.py:373: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/analysis/spikes_legacy.py:586: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib/python3.12/site-packages/netpyne/analysis/spikes_legacy.py:586: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? /usr/lib/python3.12/site-packages/netpyne/network/netrxd.py:669: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/netpyne/network/netrxd.py:669: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/netpyne/network/netrxd.py:669: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/netpyne/network/netrxd.py:669: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/site-packages/netpyne/plotting/plotTimeSeries.py:592: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/plotting/plotTimeSeries.py:592: SyntaxWarning: invalid escape sequence '\m' /usr/lib/python3.12/site-packages/netpyne/support/stackedBarGraph.py:189: SyntaxWarning: "is not" with 'str' literal. Did you mean "!="? /usr/lib/python3.12/site-packages/netpyne/support/stackedBarGraph.py:189: SyntaxWarning: "is not" with 'str' literal. Did you mean "!="? + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.sexGQ3 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.7 + '[' '!' -f /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-netpyne-1.0.7-3.fc40.x86_64-pyproject-modules -e '*optuna*' -e '*sbi*' -e '*batchtools*' Check import: netpyne Warning: no DISPLAY environment variable. --No graphics will be displayed. Check import: netpyne.analysis Check import: netpyne.analysis.csd Check import: netpyne.analysis.dipole Check import: netpyne.analysis.filter Check import: netpyne.analysis.info Check import: netpyne.analysis.interactive Check import: netpyne.analysis.lfp Check import: netpyne.analysis.lfp_orig Check import: netpyne.analysis.mapping Check import: netpyne.analysis.network Check import: netpyne.analysis.rxd Check import: netpyne.analysis.spikes Check import: netpyne.analysis.spikes_legacy Check import: netpyne.analysis.tools Check import: netpyne.analysis.traces Check import: netpyne.analysis.utils Check import: netpyne.analysis.wrapper Check import: netpyne.batch Check import: netpyne.batch.asd_parallel Check import: netpyne.batch.batch Check import: netpyne.batch.evol Check import: netpyne.batch.grid Check import: netpyne.batch.utils Check import: netpyne.cell Check import: netpyne.cell.NML2Cell Check import: netpyne.cell.NML2SpikeSource Check import: netpyne.cell.cell Check import: netpyne.cell.compartCell Check import: netpyne.cell.inputs Check import: netpyne.cell.pointCell Check import: netpyne.conversion Check import: netpyne.conversion.excel Check import: netpyne.conversion.neuromlFormat Check import: netpyne.conversion.neuronPyHoc Check import: netpyne.conversion.pythonScript Check import: netpyne.conversion.sonataImport Check import: netpyne.metadata Check import: netpyne.metadata.api Check import: netpyne.metadata.metadata Check import: netpyne.network Check import: netpyne.network.conn Check import: netpyne.network.modify Check import: netpyne.network.netrxd Check import: netpyne.network.network Check import: netpyne.network.pop Check import: netpyne.network.shape Check import: netpyne.network.stim Check import: netpyne.network.subconn Check import: netpyne.plotting Check import: netpyne.plotting.plotCSD Check import: netpyne.plotting.plotLFPLocations Check import: netpyne.plotting.plotLFPSpectrogram Check import: netpyne.plotting.plotRaster Check import: netpyne.plotting.plotShape Check import: netpyne.plotting.plotSpikeFreq Check import: netpyne.plotting.plotSpikeHist Check import: netpyne.plotting.plotTimeSeries Check import: netpyne.plotting.plotTimeSeriesPSD Check import: netpyne.plotting.plotter Check import: netpyne.sim Check import: netpyne.sim.gather Check import: netpyne.sim.load Check import: netpyne.sim.run Check import: netpyne.sim.save Check import: netpyne.sim.setup Check import: netpyne.sim.utils Check import: netpyne.sim.validator Check import: netpyne.sim.wrappers Check import: netpyne.specs Check import: netpyne.specs.dicts Check import: netpyne.specs.netParams Check import: netpyne.specs.simConfig Check import: netpyne.specs.utils Check import: netpyne.support Check import: netpyne.support.bsmart Check import: netpyne.support.filter Check import: netpyne.support.morlet Check import: netpyne.support.morphology Check import: netpyne.support.nml_reader Check import: netpyne.support.recxelectrode Check import: netpyne.support.scalebar Check import: netpyne.support.stackedBarGraph Check import: netpyne.tests Check import: netpyne.tests.checks Check import: netpyne.tests.tests Check import: netpyne.tests.validate_tests Note: SONATA import failed; import/export functions for SONATA will not be available. To use this feature install these Python packages: ['tables', 'pyneuroml', 'neuroml'] ERROR: popParams->'cellModel': No cellModel specified in population parameters..Values provided are: {'cellType': 'PYR', 'numCells': 50} ~/build/BUILD/netpyne-1.0.7/doc/source/code ~/build/BUILD/netpyne-1.0.7 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' PATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages PYTHONDONTWRITEBYTECODE=1 'PYTEST_ADDOPTS= --ignore=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir' PYTEST_XDIST_AUTO_NUM_WORKERS=6 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/netpyne-1.0.7/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=6 + pushd doc/source/code + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.7/doc/source/code Mod files: "mod/mod/A.mod" "mod/mod/AMPA.mod" "mod/mod/ElectSyn.mod" "mod/mod/GABAa.mod" "mod/mod/GradedSyn.mod" "mod/mod/MyExp2SynBB.mod" "mod/mod/MyExp2SynNMDABB.mod" "mod/mod/NMDA.mod" "mod/mod/Nca.mod" "mod/mod/OFThpo.mod" "mod/mod/OFThresh.mod" "mod/mod/ar.mod" "mod/mod/cad.mod" "mod/mod/cadad.mod" "mod/mod/cal.mod" "mod/mod/cat.mod" "mod/mod/expsynstdp.mod" "mod/mod/iholmw.mod" "mod/mod/izhi2003a.mod" "mod/mod/izhi2003b.mod" "mod/mod/izhi2007a.mod" "mod/mod/izhi2007b.mod" "mod/mod/k2.mod" "mod/mod/ka.mod" "mod/mod/kacurrent.mod" "mod/mod/kahp.mod" "mod/mod/kc.mod" "mod/mod/kca.mod" "mod/mod/kdr.mod" "mod/mod/kdrcurrent.mod" "mod/mod/km.mod" "mod/mod/km2.mod" "mod/mod/kv.mod" "mod/mod/nacurrent.mod" "mod/mod/naf.mod" "mod/mod/nap.mod" "mod/mod/naz.mod" "mod/mod/vecevent.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/ElectSyn.mod -> NMODL ../mod/AMPA.mod -> NMODL ../mod/A.mod Translating A.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/A.c INCLUDEing ofc.inc Translating ElectSyn.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/ElectSyn.c Translating AMPA.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/AMPA.c INCLUDEing ../netcon.inc Thread Safe Thread Safe -> NMODL ../mod/GABAa.mod Thread Safe -> NMODL ../mod/GradedSyn.mod -> NMODL ../mod/MyExp2SynBB.mod Translating GABAa.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/GABAa.c INCLUDEing ../netcon.inc Translating GradedSyn.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/GradedSyn.c Thread Safe Translating MyExp2SynBB.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/MyExp2SynBB.c Thread Safe -> NMODL ../mod/MyExp2SynNMDABB.mod Thread Safe -> NMODL ../mod/NMDA.mod -> NMODL ../mod/Nca.mod Translating MyExp2SynNMDABB.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/MyExp2SynNMDABB.c Translating NMDA.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/NMDA.c INCLUDEing ../netcon.inc Thread Safe Thread Safe Translating Nca.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/Nca.c -> NMODL ../mod/OFThpo.mod -> NMODL ../mod/OFThresh.mod Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe -> NMODL ../mod/ar.mod Translating OFThpo.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/OFThpo.c Translating OFThresh.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/OFThresh.c Thread Safe Thread Safe Translating ar.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/ar.c Thread Safe -> NMODL ../mod/cad.mod -> NMODL ../mod/cadad.mod -> NMODL ../mod/cal.mod Translating cad.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/cad.c Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/cadad.c Translating cal.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/cal.c Thread Safe Thread Safe Thread Safe -> NMODL ../mod/cat.mod -> NMODL ../mod/expsynstdp.mod -> NMODL ../mod/iholmw.mod -> NMODL ../mod/izhi2003a.mod Translating cat.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/cat.c Thread Safe Translating expsynstdp.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/expsynstdp.c Translating iholmw.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/iholmw.c Thread Safe -> NMODL ../mod/izhi2003b.mod INCLUDEing aux_fun.inc -> NMODL ../mod/izhi2007a.mod Thread Safe Translating izhi2003a.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/izhi2003a.c Thread Safe -> NMODL ../mod/izhi2007b.mod Translating izhi2003b.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/izhi2003b.c Translating izhi2007a.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/izhi2007a.c Thread Safe -> NMODL ../mod/k2.mod Notice: VERBATIM blocks are not thread safe -> NMODL ../mod/ka.mod Translating izhi2007b.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/izhi2007b.c Translating k2.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/k2.c Thread Safe Notice: VERBATIM blocks are not thread safe Translating ka.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/ka.c -> NMODL ../mod/kacurrent.mod -> NMODL ../mod/kahp.mod Thread Safe Translating kahp.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kahp.c Translating kacurrent.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kacurrent.c -> NMODL ../mod/kc.mod -> NMODL ../mod/kca.mod Thread Safe Thread Safe -> NMODL ../mod/kdr.mod -> NMODL ../mod/kdrcurrent.mod Translating kc.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kc.c Translating kca.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kca.c Thread Safe Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe Translating kdr.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kdr.c -> NMODL ../mod/km.mod Translating kdrcurrent.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kdrcurrent.c Thread Safe -> NMODL ../mod/km2.mod Thread Safe -> NMODL ../mod/kv.mod -> NMODL ../mod/nacurrent.mod Translating km.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/km.c Translating km2.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/km2.c Translating kv.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/kv.c Thread Safe Translating nacurrent.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/nacurrent.c Thread Safe Notice: Assignment to the GLOBAL variable, "ntau", is not thread safe Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe -> NMODL ../mod/naf.mod Thread Safe -> NMODL ../mod/nap.mod -> NMODL ../mod/naz.mod -> NMODL ../mod/vecevent.mod Translating naf.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/naf.c Translating nap.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/nap.c Thread Safe Translating naz.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/naz.c Thread Safe Translating vecevent.mod into /builddir/build/BUILD/netpyne-1.0.7/doc/source/code/x86_64/vecevent.c Notice: Assignment to the GLOBAL variable, "htau", is not thread safe Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "mtau", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe -> Compiling A.c Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it only affects and is affected by discrete events. As such it is not located in a section and is not associated with an integrator Thread Safe -> Compiling AMPA.c -> Compiling GABAa.c -> Compiling ElectSyn.c -> Compiling GradedSyn.c -> Compiling MyExp2SynBB.c -> Compiling MyExp2SynNMDABB.c -> Compiling NMDA.c -> Compiling Nca.c -> Compiling OFThpo.c -> Compiling OFThresh.c -> Compiling ar.c -> Compiling cad.c -> Compiling cadad.c -> Compiling cat.c -> Compiling cal.c -> Compiling expsynstdp.c -> Compiling iholmw.c -> Compiling izhi2003a.c -> Compiling izhi2003b.c -> Compiling izhi2007a.c -> Compiling izhi2007b.c -> Compiling k2.c -> Compiling ka.c -> Compiling kacurrent.c -> Compiling kahp.c -> Compiling kc.c -> Compiling kca.c -> Compiling kdr.c -> Compiling kdrcurrent.c -> Compiling km.c -> Compiling km2.c -> Compiling kv.c -> Compiling nacurrent.c -> Compiling naf.c -> Compiling nap.c -> Compiling naz.c -> Compiling vecevent.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 tut2.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-03-21 18:58:42.742785 Creating network of 2 cell populations on 1 hosts...: 0%| | Creating network of 2 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... S->M: 0%| | Creating synaptic connections for 0/20 presynaptic cells on node 0 (divergent connectivity) S->M: 100%|##########| Creating synaptic connections for 20/20 presynaptic cells on node 0 (divergent connectivity) Number of connections on node 0: 240 Done; cell connection time = 0.03 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.01 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.90 s; real-time ratio: 1.11. Gathering data... Done; gather time = 0.02 s. Analyzing... Cells: 40 Connections: 280 (7.00 per cell) Spikes: 931 (23.27 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.90 s Saving output as tut2_data.json ... Finished saving! Done; saving time = 0.05 s. Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.84 s Total time = 1.86 s + /usr/bin/python3 tut3.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-03-21 18:58:46.519234 Creating network of 2 cell populations on 1 hosts...: 0%| | Creating network of 2 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... S->M: 0%| | Creating synaptic connections for 0/20 postsynaptic cells on node 0 (probabilistic connectivity) S->M: 100%|##########| Creating synaptic connections for 20/20 postsynaptic cells on node 0 (probabilistic connectivity) Number of connections on node 0: 203 Done; cell connection time = 0.03 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.01 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.68 s; real-time ratio: 1.46. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 243 (6.08 per cell) Spikes: 560 (14.00 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.68 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.80 s Total time = 1.55 s + /usr/bin/python3 tut4.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-03-21 18:58:49.969072 Creating network of 2 cell populations on 1 hosts...: 0%| | Creating network of 2 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... S->M: 0%| | Creating synaptic connections for 0/20 postsynaptic cells on node 0 (probabilistic connectivity) S->M: 100%|##########| Creating synaptic connections for 20/20 postsynaptic cells on node 0 (probabilistic connectivity) Number of connections on node 0: 33 Done; cell connection time = 0.01 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.01 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.43 s; real-time ratio: 2.34. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 73 (1.82 per cell) Spikes: 1186 (29.65 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.43 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.62 s Total time = 1.08 s + /usr/bin/python3 tut5.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-03-21 18:58:52.942276 Creating network of 6 cell populations on 1 hosts...: 0%| | Creating network of 6 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 300 Done; cell creation time = 0.05 s. Making connections... E->all: 0%| | Creating synaptic connections for 0/300 postsynaptic cells on node 0 (probabilistic connectivity) E->all: 1%|1 | Creating synaptic connections for 4/300 postsynaptic cells on node 0 (probabilistic connectivity) E->all: 14%|#4 | Creating synaptic connections for 43/300 postsynaptic cells on node 0 (probabilistic connectivity) E->all: 28%|##7 | Creating synaptic connections for 83/300 postsynaptic cells on node 0 (probabilistic connectivity) E->all: 41%|####1 | Creating synaptic connections for 124/300 postsynaptic cells on node 0 (probabilistic connectivity) E->all: 54%|#####4 | Creating synaptic connections for 163/300 postsynaptic cells on node 0 (probabilistic connectivity) E->all: 68%|######7 | Creating synaptic connections for 203/300 postsynaptic cells on node 0 (probabilistic connectivity) E->all: 81%|########1 | Creating synaptic connections for 243/300 postsynaptic cells on node 0 (probabilistic connectivity) E->all: 94%|#########3| Creating synaptic connections for 282/300 postsynaptic cells on node 0 (probabilistic connectivity) E->all: 100%|##########| Creating synaptic connections for 300/300 postsynaptic cells on node 0 (probabilistic connectivity) I->E: 0%| | Creating synaptic connections for 0/150 postsynaptic cells on node 0 (probabilistic connectivity) I->E: 26%|##6 | Creating synaptic connections for 39/150 postsynaptic cells on node 0 (probabilistic connectivity) I->E: 52%|#####2 | Creating synaptic connections for 78/150 postsynaptic cells on node 0 (probabilistic connectivity) I->E: 79%|#######8 | Creating synaptic connections for 118/150 postsynaptic cells on node 0 (probabilistic connectivity) I->E: 100%|##########| Creating synaptic connections for 150/150 postsynaptic cells on node 0 (probabilistic connectivity) Number of connections on node 0: 6796 Done; cell connection time = 1.39 s. Adding stims... Number of stims on node 0: 300 Done; cell stims creation time = 0.04 s. Recording 0 traces of 0 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 14.07 s; real-time ratio: 0.07. Gathering data... Done; gather time = 0.25 s. Analyzing... Cells: 300 Connections: 7096 (23.65 per cell) Spikes: 4808 (16.03 Hz) Simulated time: 1.0 s; 1 workers Run time: 14.07 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Done; plotting time = 0.49 s Total time = 16.29 s + /usr/bin/python3 tut6.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-03-21 18:59:11.153298 Creating network of 2 cell populations on 1 hosts...: 0%| | Creating network of 2 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... Number of connections on node 0: 0 Done; cell connection time = 0.00 s. Adding stims... Number of stims on node 0: 48 Done; cell stims creation time = 0.01 s. Recording 2 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.39 s; real-time ratio: 2.56. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 16 (0.40 per cell) Spikes: 134 (3.35 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.39 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Done; plotting time = 0.53 s Total time = 0.94 s + /usr/bin/python3 tut7.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2025-03-21 18:59:13.958461 Creating network of 1 cell populations on 1 hosts...: 0%| | Creating network of 1 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 50 Done; cell creation time = 0.01 s. Making connections... hop->hop: 0%| | Creating synaptic connections for 0/50 postsynaptic cells on node 0 (all-to-all connectivity) hop->hop: 38%|###8 | Creating synaptic connections for 19/50 postsynaptic cells on node 0 (all-to-all connectivity) hop->hop: 76%|#######6 | Creating synaptic connections for 38/50 postsynaptic cells on node 0 (all-to-all connectivity) hop->hop: 100%|##########| Creating synaptic connections for 50/50 postsynaptic cells on node 0 (all-to-all connectivity) Number of connections on node 0: 2450 Done; cell connection time = 0.29 s. Adding stims... Number of stims on node 0: 50 Done; cell stims creation time = 0.01 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 500.0 ms... Done; run time = 1.84 s; real-time ratio: 0.27. Gathering data... Done; gather time = 0.08 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 1261 (50.44 Hz) Simulated time: 0.5 s; 1 workers Run time: 1.84 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 2.65 s Total time = 4.87 s Modfying connection parameters... Done; connections modification time = 0.01 s. Running simulation using NEURON for 500.0 ms... Done; run time = 2.23 s; real-time ratio: 0.22. Gathering data... Done; gather time = 0.08 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 583 (23.32 Hz) Simulated time: 0.5 s; 1 workers Run time: 2.23 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 2.74 s Modfying cell parameters... Done; cells modification time = 0.00 s. Running simulation using NEURON for 500.0 ms... Done; run time = 2.34 s; real-time ratio: 0.21. Gathering data... Done; gather time = 0.08 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 332 (13.28 Hz) Simulated time: 0.5 s; 1 workers Run time: 2.34 s Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/HHTut/src ~/build/BUILD/netpyne-1.0.7 + popd + pushd examples/HHTut/src + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. -nogui passed, matplotlib is unavailable -nogui passed, matplotlib is unavailable Loading model from /builddir/build/BUILD/netpyne-1.0.7/examples/HHTut/src/index.npjson ... Traceback (most recent call last): File "/builddir/build/BUILD/netpyne-1.0.7/examples/HHTut/src/init.py", line 3, in cfg, netParams = sim.loadFromIndexFile('index.npjson') ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 471, in loadFromIndexFile return loadModel(index, loadMechs=False) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 494, in loadModel with open(index, 'r') as fileObj: ^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/builddir/build/BUILD/netpyne-1.0.7/examples/HHTut/src/index.npjson' ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/HybridTut/src ~/build/BUILD/netpyne-1.0.7 + true + popd + pushd examples/HybridTut/src/ + nrnivmodl ../mod/ /builddir/build/BUILD/netpyne-1.0.7/examples/HybridTut/src Mod files: "../mod/../mod//izhi2007b.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../../mod//izhi2007b.mod Translating izhi2007b.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/HybridTut/src/x86_64/izhi2007b.c Notice: VERBATIM blocks are not thread safe -> Compiling izhi2007b.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. -nogui passed, matplotlib is unavailable -nogui passed, matplotlib is unavailable Loading model from /builddir/build/BUILD/netpyne-1.0.7/examples/HybridTut/src/index.npjson ... Traceback (most recent call last): File "/builddir/build/BUILD/netpyne-1.0.7/examples/HybridTut/src/init.py", line 3, in cfg, netParams = sim.loadFromIndexFile('index.npjson') ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 471, in loadFromIndexFile return loadModel(index, loadMechs=False) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 494, in loadModel with open(index, 'r') as fileObj: ^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/builddir/build/BUILD/netpyne-1.0.7/examples/HybridTut/src/index.npjson' + true ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/M1/src ~/build/BUILD/netpyne-1.0.7 + popd + pushd examples/M1/src + nrnivmodl ../mod /builddir/build/BUILD/netpyne-1.0.7/examples/M1/src Mod files: "../mod/../mod/izhi2007b.mod" Creating 'x86_64' directory for .o files. -> NMODL ../../mod/izhi2007b.mod -> Compiling mod_func.cpp Translating izhi2007b.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/M1/src/x86_64/izhi2007b.c Notice: VERBATIM blocks are not thread safe -> Compiling izhi2007b.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. -nogui passed, matplotlib is unavailable -nogui passed, matplotlib is unavailable Loading model from /builddir/build/BUILD/netpyne-1.0.7/examples/M1/src/index.npjson ... Traceback (most recent call last): File "/builddir/build/BUILD/netpyne-1.0.7/examples/M1/src/init.py", line 3, in cfg, netParams = sim.loadFromIndexFile('index.npjson') ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 471, in loadFromIndexFile return loadModel(index, loadMechs=False) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 494, in loadModel with open(index, 'r') as fileObj: ^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/builddir/build/BUILD/netpyne-1.0.7/examples/M1/src/index.npjson' ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/PTcell/src ~/build/BUILD/netpyne-1.0.7 + true + popd + pushd examples/PTcell/src + nrnivmodl ../mod/ /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src Mod files: "../mod/../mod//HCN1.mod" "../mod/../mod//IC.mod" "../mod/../mod//IKsin.mod" "../mod/../mod//MyExp2SynBB.mod" "../mod/../mod//MyExp2SynNMDABB.mod" "../mod/../mod//ar_traub.mod" "../mod/../mod//cadad.mod" "../mod/../mod//cadyn.mod" "../mod/../mod//cagk.mod" "../mod/../mod//cal_mh.mod" "../mod/../mod//cal_mig.mod" "../mod/../mod//can_mig.mod" "../mod/../mod//canin.mod" "../mod/../mod//cat_mig.mod" "../mod/../mod//cat_traub.mod" "../mod/../mod//catcb.mod" "../mod/../mod//gabab.mod" "../mod/../mod//h_BS.mod" "../mod/../mod//h_harnett.mod" "../mod/../mod//h_kole.mod" "../mod/../mod//h_migliore.mod" "../mod/../mod//hin.mod" "../mod/../mod//ican_sidi.mod" "../mod/../mod//kBK.mod" "../mod/../mod//kap_BS.mod" "../mod/../mod//kapcb.mod" "../mod/../mod//kapin.mod" "../mod/../mod//kctin.mod" "../mod/../mod//kdmc_BS.mod" "../mod/../mod//kdr_BS.mod" "../mod/../mod//kdrin.mod" "../mod/../mod//nafx.mod" "../mod/../mod//nap_sidi.mod" "../mod/../mod//nax_BS.mod" "../mod/../mod//savedist.mod" "../mod/../mod//vecstim.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../../mod//HCN1.mod -> NMODL ../../mod//IC.mod -> NMODL ../../mod//IKsin.mod Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/IC.c Translating HCN1.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/HCN1.c Thread Safe Translating IKsin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/IKsin.c Thread Safe Thread Safe -> NMODL ../../mod//MyExp2SynBB.mod -> NMODL ../../mod//MyExp2SynNMDABB.mod -> NMODL ../../mod//ar_traub.mod Translating MyExp2SynBB.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/MyExp2SynBB.c Thread Safe Translating ar_traub.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/ar_traub.c Translating MyExp2SynNMDABB.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/MyExp2SynNMDABB.c Thread Safe INCLUDEing ghk.inc Warning: celsius undefined. (declared within VERBATIM?) Thread Safe -> NMODL ../../mod//cadad.mod -> NMODL ../../mod//cadyn.mod -> NMODL ../../mod//cagk.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cadad.c Translating cadyn.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cadyn.c Thread Safe Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cagk.c Thread Safe -> NMODL ../../mod//cal_mh.mod Thread Safe -> NMODL ../../mod//cal_mig.mod -> NMODL ../../mod//can_mig.mod Translating cal_mh.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cal_mh.c Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cal_mig.c Thread Safe -> NMODL ../../mod//canin.mod Thread Safe Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/can_mig.c Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../../mod//cat_mig.mod Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Translating canin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/canin.c Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cat_mig.c -> NMODL ../../mod//cat_traub.mod Thread Safe Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../../mod//catcb.mod -> NMODL ../../mod//gabab.mod Translating cat_traub.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/cat_traub.c Thread Safe Translating catcb.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/catcb.c -> NMODL ../../mod//h_BS.mod Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe -> NMODL ../../mod//h_harnett.mod Notice: Assignment to the GLOBAL variable, "minf", is not thread safe Translating gabab.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/gabab.c -> NMODL ../../mod//h_kole.mod Notice: Assignment to the GLOBAL variable, "warn", is not thread safe Translating h_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/h_BS.c Translating h_harnett.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/h_harnett.c -> NMODL ../../mod//h_migliore.mod Thread Safe Thread Safe Warning: Default 34 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../../mod//hin.mod Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/h_kole.c -> NMODL ../../mod//ican_sidi.mod Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/h_migliore.c Thread Safe Translating hin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/hin.c Thread Safe Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/ican_sidi.c Thread Safe Warning: Default -10 of PARAMETER ehi will be ignored and set by NEURON. -> NMODL ../../mod//kBK.mod -> NMODL ../../mod//kap_BS.mod -> NMODL ../../mod//kapcb.mod Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../../mod//kapin.mod Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kBK.c Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kap_BS.c Translating kapcb.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kapcb.c Thread Safe Thread Safe Thread Safe Translating kapin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kapin.c -> NMODL ../../mod//kctin.mod -> NMODL ../../mod//kdmc_BS.mod Thread Safe -> NMODL ../../mod//kdr_BS.mod Translating kctin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kctin.c -> NMODL ../../mod//kdrin.mod Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kdmc_BS.c NEURON's CVode method ignores conservation Thread Safe Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kdr_BS.c Thread Safe -> NMODL ../../mod//nafx.mod Translating kdrin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/kdrin.c -> NMODL ../../mod//nap_sidi.mod Thread Safe Thread Safe -> NMODL ../../mod//nax_BS.mod Translating nafx.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/nafx.c -> NMODL ../../mod//savedist.mod Translating nap_sidi.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/nap_sidi.c Thread Safe Warning: Default 55 of PARAMETER ena will be ignored and set by NEURON. Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/nax_BS.c Thread Safe Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/savedist.c -> NMODL ../../mod//vecstim.mod Thread Safe Thread Safe -> Compiling HCN1.c -> Compiling IC.c -> Compiling IKsin.c Translating vecstim.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/x86_64/vecstim.c Thread Safe -> Compiling MyExp2SynBB.c -> Compiling MyExp2SynNMDABB.c -> Compiling ar_traub.c -> Compiling cadad.c -> Compiling cadyn.c -> Compiling cagk.c -> Compiling cal_mh.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling canin.c -> Compiling cat_mig.c -> Compiling cat_traub.c -> Compiling catcb.c -> Compiling gabab.c -> Compiling h_BS.c -> Compiling h_harnett.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling hin.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kapcb.c -> Compiling kapin.c -> Compiling kctin.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling kdrin.c -> Compiling nafx.c -> Compiling nap_sidi.c -> Compiling nax_BS.c -> Compiling savedist.c -> Compiling vecstim.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. -nogui passed, matplotlib is unavailable -nogui passed, matplotlib is unavailable Loading model from /builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/index.npjson ... Traceback (most recent call last): File "/builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/init.py", line 17, in cfg, netParams = sim.loadFromIndexFile('index.npjson') ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 471, in loadFromIndexFile return loadModel(index, loadMechs=False) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/lib/python3.12/site-packages/netpyne/sim/load.py", line 494, in loadModel with open(index, 'r') as fileObj: ^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/builddir/build/BUILD/netpyne-1.0.7/examples/PTcell/src/index.npjson' ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/LFPrecording ~/build/BUILD/netpyne-1.0.7 + true + popd + pushd examples/LFPrecording + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording Mod files: "mod/mod/IC.mod" "mod/mod/cadad.mod" "mod/mod/cagk.mod" "mod/mod/cal_mig.mod" "mod/mod/can_mig.mod" "mod/mod/cat_mig.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/ican_sidi.mod" "mod/mod/kBK.mod" "mod/mod/kap_BS.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/nax_BS.mod" "mod/mod/savedist.mod" Creating 'x86_64' directory for .o files. -> NMODL ../mod/IC.mod -> Compiling mod_func.cpp -> NMODL ../mod/cagk.mod -> NMODL ../mod/cadad.mod Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/IC.c Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/cagk.c Thread Safe Thread Safe Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/cadad.c -> NMODL ../mod/cal_mig.mod Thread Safe -> NMODL ../mod/can_mig.mod -> NMODL ../mod/cat_mig.mod Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/cal_mig.c Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/can_mig.c Thread Safe Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/cat_mig.c Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../mod/h_kole.mod -> NMODL ../mod/h_migliore.mod Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/ican_sidi.mod Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/h_migliore.c Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/h_kole.c Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/ican_sidi.c Thread Safe Thread Safe Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/kBK.mod -> NMODL ../mod/kdmc_BS.mod -> NMODL ../mod/kap_BS.mod Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/kBK.c Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/kdmc_BS.c Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/kap_BS.c Thread Safe -> NMODL ../mod/kdr_BS.mod Thread Safe Thread Safe -> NMODL ../mod/nax_BS.mod Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/kdr_BS.c -> NMODL ../mod/savedist.mod Thread Safe -> Compiling IC.c Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/nax_BS.c -> Compiling cadad.c Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/x86_64/savedist.c Thread Safe Thread Safe -> Compiling cagk.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling cat_mig.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling nax_BS.c -> Compiling savedist.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 cell_lfp.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.7/examples/LFPrecording/cell_lfp.py': [Errno 2] No such file or directory ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/saving ~/build/BUILD/netpyne-1.0.7 + true + popd + pushd examples/saving + /usr/bin/python3 init.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.7/examples/saving/init.py': [Errno 2] No such file or directory + true + popd ~/build/BUILD/netpyne-1.0.7 ~/build/BUILD/netpyne-1.0.7/examples/rxd_buffering ~/build/BUILD/netpyne-1.0.7 + pushd examples/rxd_buffering + /usr/bin/python3 buffering.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.7/examples/rxd_buffering/buffering.py': [Errno 2] No such file or directory + true + popd ~/build/BUILD/netpyne-1.0.7 + pushd examples/rxd_net/ ~/build/BUILD/netpyne-1.0.7/examples/rxd_net ~/build/BUILD/netpyne-1.0.7 + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net Mod files: "mod/mod/HCN1.mod" "mod/mod/IC.mod" "mod/mod/IKsin.mod" "mod/mod/ar_traub.mod" "mod/mod/cadad.mod" "mod/mod/cadyn.mod" "mod/mod/cagk.mod" "mod/mod/cal_mh.mod" "mod/mod/cal_mig.mod" "mod/mod/can_mig.mod" "mod/mod/canin.mod" "mod/mod/cat_mig.mod" "mod/mod/cat_traub.mod" "mod/mod/catcb.mod" "mod/mod/gabab.mod" "mod/mod/h_BS.mod" "mod/mod/h_harnett.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/hin.mod" "mod/mod/ican_sidi.mod" "mod/mod/kBK.mod" "mod/mod/kap_BS.mod" "mod/mod/kapcb.mod" "mod/mod/kapin.mod" "mod/mod/kctin.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/kdrin.mod" "mod/mod/nafx.mod" "mod/mod/nap_sidi.mod" "mod/mod/nax_BS.mod" "mod/mod/savedist.mod" "mod/mod/vecstim.mod" Creating 'x86_64' directory for .o files. -> NMODL ../mod/HCN1.mod -> Compiling mod_func.cpp -> NMODL ../mod/IC.mod -> NMODL ../mod/IKsin.mod Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/IC.c Translating HCN1.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/HCN1.c Translating IKsin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/IKsin.c Thread Safe Thread Safe Thread Safe -> NMODL ../mod/ar_traub.mod -> NMODL ../mod/cadad.mod -> NMODL ../mod/cadyn.mod Translating ar_traub.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/ar_traub.c Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cadad.c Thread Safe Translating cadyn.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cadyn.c Thread Safe Thread Safe -> NMODL ../mod/cagk.mod -> NMODL ../mod/cal_mh.mod -> NMODL ../mod/cal_mig.mod Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cagk.c Thread Safe Translating cal_mh.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cal_mh.c Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cal_mig.c -> NMODL ../mod/can_mig.mod Thread Safe -> NMODL ../mod/canin.mod Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/can_mig.c -> NMODL ../mod/cat_mig.mod Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Thread Safe Translating canin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/canin.c -> NMODL ../mod/cat_traub.mod Thread Safe Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cat_mig.c -> NMODL ../mod/catcb.mod Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. Translating cat_traub.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/cat_traub.c Thread Safe Thread Safe -> NMODL ../mod/gabab.mod Translating catcb.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/catcb.c Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe -> NMODL ../mod/h_BS.mod -> NMODL ../mod/h_harnett.mod Translating gabab.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/gabab.c Notice: Assignment to the GLOBAL variable, "warn", is not thread safe Translating h_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/h_BS.c -> NMODL ../mod/h_kole.mod Translating h_harnett.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/h_harnett.c Thread Safe Thread Safe Warning: Default 34 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/h_migliore.mod -> NMODL ../mod/hin.mod Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/h_kole.c Thread Safe Translating hin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/hin.c Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/h_migliore.c Thread Safe Warning: Default -10 of PARAMETER ehi will be ignored and set by NEURON. -> NMODL ../mod/ican_sidi.mod Thread Safe -> NMODL ../mod/kBK.mod -> NMODL ../mod/kap_BS.mod Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/ican_sidi.c Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kBK.c Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. Thread Safe Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kap_BS.c -> NMODL ../mod/kapcb.mod -> NMODL ../mod/kapin.mod Thread Safe -> NMODL ../mod/kctin.mod Translating kapcb.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kapcb.c Translating kapin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kapin.c -> NMODL ../mod/kdmc_BS.mod Thread Safe Translating kctin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kctin.c Thread Safe NEURON's CVode method ignores conservation -> NMODL ../mod/kdr_BS.mod Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kdmc_BS.c -> NMODL ../mod/kdrin.mod Thread Safe Thread Safe -> NMODL ../mod/nafx.mod Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kdr_BS.c Translating kdrin.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/kdrin.c -> NMODL ../mod/nap_sidi.mod Thread Safe Thread Safe Translating nafx.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/nafx.c -> NMODL ../mod/nax_BS.mod Translating nap_sidi.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/nap_sidi.c -> NMODL ../mod/savedist.mod Thread Safe Warning: Default 55 of PARAMETER ena will be ignored and set by NEURON. Thread Safe Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/savedist.c Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/nax_BS.c Thread Safe -> Compiling HCN1.c -> NMODL ../mod/vecstim.mod -> Compiling IC.c Thread Safe Translating vecstim.mod into /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/x86_64/vecstim.c Thread Safe -> Compiling IKsin.c -> Compiling ar_traub.c -> Compiling cadad.c -> Compiling cadyn.c -> Compiling cagk.c -> Compiling cal_mh.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling canin.c -> Compiling cat_mig.c -> Compiling cat_traub.c -> Compiling catcb.c -> Compiling gabab.c -> Compiling h_BS.c -> Compiling h_harnett.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling hin.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kapcb.c -> Compiling kapin.c -> Compiling kctin.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling kdrin.c -> Compiling nafx.c -> Compiling nap_sidi.c -> Compiling nax_BS.c -> Compiling savedist.c -> Compiling vecstim.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.12 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 src/init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. -nogui passed, matplotlib is unavailable -nogui passed, matplotlib is unavailable Loading model from /builddir/build/BUILD/netpyne-1.0.7/examples/rxd_net/index.npjson ... Loading simConfig: src/cfg.py ... Loading netParams: src/netParams.py ... Start time: 2025-03-21 18:59:40.357048 Creating network of 6 cell populations on 1 hosts...: 0%| | Creating network of 6 cell populations on 1 hosts...: 100%|##########| Number of cells on node 0: 60 Done; cell creation time = 0.08 s. Making connections... E->all: 0%| | Creating synaptic connections for 0/60 postsynaptic cells on node 0 (probabilistic connectivity) E->all: 100%|##########| Creating synaptic connections for 60/60 postsynaptic cells on node 0 (probabilistic connectivity) I->E: 0%| | Creating synaptic connections for 0/30 postsynaptic cells on node 0 (probabilistic connectivity) I->E: 100%|##########| Creating synaptic connections for 30/30 postsynaptic cells on node 0 (probabilistic connectivity) Number of connections on node 0: 309 Done; cell connection time = 0.07 s. Adding stims... Number of stims on node 0: 60 Done; cell stims creation time = 0.01 s. Adding RxD... Created Region cyt Created Region er Created Region cyt_er_membrane Created Extracellular Region ecs Created Species ca Created Species ip3 Created State ip3r_gate_state Created MultiCompartmentReaction serca Created MultiCompartmentReaction leak Created MultiCompartmentReaction ip3r Created Rate ip3rg Done; RxD setup time = 0.02 s. Recording 4 traces of 4 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 66.65 s; real-time ratio: 0.02. Gathering data... Done; gather time = 0.07 s. Analyzing... Cells: 60 Connections: 369 (6.15 per cell) Spikes: 937 (15.62 Hz) Simulated time: 1.0 s; 1 workers Run time: 66.65 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) ~/build/BUILD/netpyne-1.0.7 + popd + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-netpyne-1.0.7-3.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.cnGuSe + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.7 + DOCDIR=/builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/share/doc/python3-netpyne + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/share/doc/python3-netpyne + cp -pr /builddir/build/BUILD/netpyne-1.0.7/README.md /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/share/doc/python3-netpyne + cp -pr /builddir/build/BUILD/netpyne-1.0.7/CHANGES.md /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64/usr/share/doc/python3-netpyne + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-netpyne = 1.0.7-3.fc40 python3-netpyne = 1.0.7-3.fc40 python3.12-netpyne = 1.0.7-3.fc40 python3.12dist(netpyne) = 1.0.7 python3dist(netpyne) = 1.0.7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(bokeh) python3.12dist(lfpykit) python3.12dist(matplotlib) python3.12dist(matplotlib-scalebar) python3.12dist(numpy) python3.12dist(pandas) python3.12dist(schema) python3.12dist(scipy) python3.12dist(tqdm) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-netpyne-1.0.7-3.fc40.x86_64 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.7-3.fc40.src.rpm Wrote: /builddir/build/RPMS/python3-netpyne-1.0.7-3.fc40.noarch.rpm Child return code was: 0