Mock Version: 6.1 Mock Version: 6.1 Mock Version: 6.1 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-zarr.spec'], chrootPath='/var/lib/mock/f43-build-58471277-6565731/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ff67fb0fe5c144fba679e4246891add7', '-D', '/var/lib/mock/f43-build-58471277-6565731/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-zarr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1737158400 Wrote: /builddir/build/SRPMS/python-zarr-2.18.4-2.fc43.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-zarr.spec'], chrootPath='/var/lib/mock/f43-build-58471277-6565731/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '2a1f533cdfb642bc91e4518bafb91483', '-D', '/var/lib/mock/f43-build-58471277-6565731/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-zarr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1737158400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.YXaxv1 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.mKyOA3 + umask 022 + cd /builddir/build/BUILD/python-zarr-2.18.4-build + cd /builddir/build/BUILD/python-zarr-2.18.4-build + rm -rf zarr-2.18.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/zarr-2.18.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd zarr-2.18.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Adapt-storage-tests-for-changes-in-fsspec-1819-1679.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-array-tests-handle-different-hexdigests-from-zlib-ng.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Allow-numcodecs-0.14.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.uqwYab + umask 022 + cd /builddir/build/BUILD/python-zarr-2.18.4-build + cd zarr-2.18.4 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=43 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/pyproject-wheeldir --output /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-buildrequires Handling setuptools>=64 from build-system.requires Requirement not satisfied: setuptools>=64 Handling setuptools-scm>8 from build-system.requires Requirement not satisfied: setuptools-scm>8 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-zarr-2.18.4-2.fc43.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-zarr.spec'], chrootPath='/var/lib/mock/f43-build-58471277-6565731/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ba357ca78e704829a76e9690e9437668', '-D', '/var/lib/mock/f43-build-58471277-6565731/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-zarr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1737158400 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.gNb7NE + umask 022 + cd /builddir/build/BUILD/python-zarr-2.18.4-build + cd zarr-2.18.4 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=43 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/pyproject-wheeldir --output /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-buildrequires Handling setuptools>=64 from build-system.requires Requirement satisfied: setuptools>=64 (installed: setuptools 76.1.0) Handling setuptools-scm>8 from build-system.requires Requirement satisfied: setuptools-scm>8 (installed: setuptools-scm 8.2.1) running egg_info writing zarr.egg-info/PKG-INFO writing dependency_links to zarr.egg-info/dependency_links.txt writing requirements to zarr.egg-info/requires.txt writing top-level names to zarr.egg-info/top_level.txt reading manifest file 'zarr.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'zarr.egg-info/SOURCES.txt' running dist_info writing zarr.egg-info/PKG-INFO writing dependency_links to zarr.egg-info/dependency_links.txt writing requirements to zarr.egg-info/requires.txt writing top-level names to zarr.egg-info/top_level.txt reading manifest file 'zarr.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'zarr.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/zarr-2.18.4.dist-info' Handling asciitree from hook generated metadata: Requires-Dist (zarr) Requirement not satisfied: asciitree Handling numpy>=1.24 from hook generated metadata: Requires-Dist (zarr) Requirement satisfied: numpy>=1.24 (installed: numpy 2.2.4) Handling fasteners; sys_platform != "emscripten" from hook generated metadata: Requires-Dist (zarr) Requirement not satisfied: fasteners; sys_platform != "emscripten" Handling numcodecs>=0.10.0 from hook generated metadata: Requires-Dist (zarr) Requirement not satisfied: numcodecs>=0.10.0 Handling notebook; extra == "jupyter" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: notebook; extra == "jupyter" Handling ipytree>=0.2.2; extra == "jupyter" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: ipytree>=0.2.2; extra == "jupyter" Handling ipywidgets>=8.0.0; extra == "jupyter" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: ipywidgets>=8.0.0; extra == "jupyter" Handling sphinx; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx; extra == "docs" Handling sphinx-automodapi; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx-automodapi; extra == "docs" Handling sphinx_design; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx_design; extra == "docs" Handling sphinx-issues; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx-issues; extra == "docs" Handling sphinx-copybutton; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx-copybutton; extra == "docs" Handling pydata-sphinx-theme; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: pydata-sphinx-theme; extra == "docs" Handling numpydoc; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: numpydoc; extra == "docs" Handling numcodecs[msgpack]; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: numcodecs[msgpack]; extra == "docs" Handling pytest-doctestplus; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: pytest-doctestplus; extra == "docs" + cat /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-buildrequires + rm -rfv zarr-2.18.4.dist-info/ removed 'zarr-2.18.4.dist-info/top_level.txt' removed 'zarr-2.18.4.dist-info/METADATA' removed 'zarr-2.18.4.dist-info/LICENSE.txt' removed directory 'zarr-2.18.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-zarr-2.18.4-2.fc43.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-zarr.spec'], chrootPath='/var/lib/mock/f43-build-58471277-6565731/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ecea149782414ac28cfe80ae55904627', '-D', '/var/lib/mock/f43-build-58471277-6565731/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-zarr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1737158400 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.xGZt5N + umask 022 + cd /builddir/build/BUILD/python-zarr-2.18.4-build + cd zarr-2.18.4 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=43 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/pyproject-wheeldir --output /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-buildrequires Handling setuptools>=64 from build-system.requires Requirement satisfied: setuptools>=64 (installed: setuptools 76.1.0) Handling setuptools-scm>8 from build-system.requires Requirement satisfied: setuptools-scm>8 (installed: setuptools-scm 8.2.1) running egg_info writing zarr.egg-info/PKG-INFO writing dependency_links to zarr.egg-info/dependency_links.txt writing requirements to zarr.egg-info/requires.txt writing top-level names to zarr.egg-info/top_level.txt reading manifest file 'zarr.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'zarr.egg-info/SOURCES.txt' running dist_info writing zarr.egg-info/PKG-INFO writing dependency_links to zarr.egg-info/dependency_links.txt writing requirements to zarr.egg-info/requires.txt writing top-level names to zarr.egg-info/top_level.txt reading manifest file 'zarr.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'zarr.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/zarr-2.18.4.dist-info' Handling asciitree from hook generated metadata: Requires-Dist (zarr) Requirement satisfied: asciitree (installed: asciitree 0.3.3) Handling numpy>=1.24 from hook generated metadata: Requires-Dist (zarr) Requirement satisfied: numpy>=1.24 (installed: numpy 2.2.4) Handling fasteners; sys_platform != "emscripten" from hook generated metadata: Requires-Dist (zarr) Requirement satisfied: fasteners; sys_platform != "emscripten" (installed: fasteners 0.19) Handling numcodecs>=0.10.0 from hook generated metadata: Requires-Dist (zarr) Requirement satisfied: numcodecs>=0.10.0 (installed: numcodecs 0.15.1) Handling notebook; extra == "jupyter" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: notebook; extra == "jupyter" Handling ipytree>=0.2.2; extra == "jupyter" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: ipytree>=0.2.2; extra == "jupyter" Handling ipywidgets>=8.0.0; extra == "jupyter" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: ipywidgets>=8.0.0; extra == "jupyter" Handling sphinx; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx; extra == "docs" Handling sphinx-automodapi; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx-automodapi; extra == "docs" Handling sphinx_design; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx_design; extra == "docs" Handling sphinx-issues; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx-issues; extra == "docs" Handling sphinx-copybutton; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx-copybutton; extra == "docs" Handling pydata-sphinx-theme; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: pydata-sphinx-theme; extra == "docs" Handling numpydoc; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: numpydoc; extra == "docs" Handling numcodecs[msgpack]; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: numcodecs[msgpack]; extra == "docs" Handling pytest-doctestplus; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: pytest-doctestplus; extra == "docs" + cat /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-buildrequires + rm -rfv zarr-2.18.4.dist-info/ removed 'zarr-2.18.4.dist-info/top_level.txt' removed 'zarr-2.18.4.dist-info/METADATA' removed 'zarr-2.18.4.dist-info/LICENSE.txt' removed directory 'zarr-2.18.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-zarr-2.18.4-2.fc43.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-zarr.spec'], chrootPath='/var/lib/mock/f43-build-58471277-6565731/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a6162a62eaee42dcbf67bdaa955de3f2', '-D', '/var/lib/mock/f43-build-58471277-6565731/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-zarr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: noarch Building for target noarch setting SOURCE_DATE_EPOCH=1737158400 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.adbPOh + umask 022 + cd /builddir/build/BUILD/python-zarr-2.18.4-build + cd zarr-2.18.4 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + RPM_TOXENV=py313 + FEDORA=43 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/pyproject-wheeldir --output /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-buildrequires Handling setuptools>=64 from build-system.requires Requirement satisfied: setuptools>=64 (installed: setuptools 76.1.0) Handling setuptools-scm>8 from build-system.requires Requirement satisfied: setuptools-scm>8 (installed: setuptools-scm 8.2.1) running egg_info writing zarr.egg-info/PKG-INFO writing dependency_links to zarr.egg-info/dependency_links.txt writing requirements to zarr.egg-info/requires.txt writing top-level names to zarr.egg-info/top_level.txt reading manifest file 'zarr.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'zarr.egg-info/SOURCES.txt' running dist_info writing zarr.egg-info/PKG-INFO writing dependency_links to zarr.egg-info/dependency_links.txt writing requirements to zarr.egg-info/requires.txt writing top-level names to zarr.egg-info/top_level.txt reading manifest file 'zarr.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'zarr.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/zarr-2.18.4.dist-info' Handling asciitree from hook generated metadata: Requires-Dist (zarr) Requirement satisfied: asciitree (installed: asciitree 0.3.3) Handling numpy>=1.24 from hook generated metadata: Requires-Dist (zarr) Requirement satisfied: numpy>=1.24 (installed: numpy 2.2.4) Handling fasteners; sys_platform != "emscripten" from hook generated metadata: Requires-Dist (zarr) Requirement satisfied: fasteners; sys_platform != "emscripten" (installed: fasteners 0.19) Handling numcodecs>=0.10.0 from hook generated metadata: Requires-Dist (zarr) Requirement satisfied: numcodecs>=0.10.0 (installed: numcodecs 0.15.1) Handling notebook; extra == "jupyter" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: notebook; extra == "jupyter" Handling ipytree>=0.2.2; extra == "jupyter" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: ipytree>=0.2.2; extra == "jupyter" Handling ipywidgets>=8.0.0; extra == "jupyter" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: ipywidgets>=8.0.0; extra == "jupyter" Handling sphinx; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx; extra == "docs" Handling sphinx-automodapi; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx-automodapi; extra == "docs" Handling sphinx_design; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx_design; extra == "docs" Handling sphinx-issues; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx-issues; extra == "docs" Handling sphinx-copybutton; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: sphinx-copybutton; extra == "docs" Handling pydata-sphinx-theme; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: pydata-sphinx-theme; extra == "docs" Handling numpydoc; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: numpydoc; extra == "docs" Handling numcodecs[msgpack]; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: numcodecs[msgpack]; extra == "docs" Handling pytest-doctestplus; extra == "docs" from hook generated metadata: Requires-Dist (zarr) Ignoring alien requirement: pytest-doctestplus; extra == "docs" + cat /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-buildrequires + rm -rfv zarr-2.18.4.dist-info/ removed 'zarr-2.18.4.dist-info/top_level.txt' removed 'zarr-2.18.4.dist-info/METADATA' removed 'zarr-2.18.4.dist-info/LICENSE.txt' removed directory 'zarr-2.18.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.wLEk3b + umask 022 + cd /builddir/build/BUILD/python-zarr-2.18.4-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd zarr-2.18.4 + mkdir -p /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + LT_SYS_LIBRARY_PATH=/usr/lib: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/pyproject-wheeldir Processing /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir/pip-modern-metadata-h0r1apbs/zarr.egg-info writing /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir/pip-modern-metadata-h0r1apbs/zarr.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir/pip-modern-metadata-h0r1apbs/zarr.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir/pip-modern-metadata-h0r1apbs/zarr.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir/pip-modern-metadata-h0r1apbs/zarr.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir/pip-modern-metadata-h0r1apbs/zarr.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir/pip-modern-metadata-h0r1apbs/zarr.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file '/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir/pip-modern-metadata-h0r1apbs/zarr.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir/pip-modern-metadata-h0r1apbs/zarr-2.18.4.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: zarr Building wheel for zarr (pyproject.toml): started Running command Building wheel for zarr (pyproject.toml) running bdist_wheel running build running build_py creating build/lib/zarr copying zarr/__init__.py -> build/lib/zarr copying zarr/attrs.py -> build/lib/zarr copying zarr/codecs.py -> build/lib/zarr copying zarr/context.py -> build/lib/zarr copying zarr/convenience.py -> build/lib/zarr copying zarr/core.py -> build/lib/zarr copying zarr/creation.py -> build/lib/zarr copying zarr/errors.py -> build/lib/zarr copying zarr/hierarchy.py -> build/lib/zarr copying zarr/indexing.py -> build/lib/zarr copying zarr/meta.py -> build/lib/zarr copying zarr/meta_v1.py -> build/lib/zarr copying zarr/n5.py -> build/lib/zarr copying zarr/storage.py -> build/lib/zarr copying zarr/sync.py -> build/lib/zarr copying zarr/types.py -> build/lib/zarr copying zarr/util.py -> build/lib/zarr copying zarr/version.py -> build/lib/zarr creating build/lib/zarr/_storage copying zarr/_storage/__init__.py -> build/lib/zarr/_storage copying zarr/_storage/absstore.py -> build/lib/zarr/_storage copying zarr/_storage/store.py -> build/lib/zarr/_storage copying zarr/_storage/v3.py -> build/lib/zarr/_storage copying zarr/_storage/v3_storage_transformers.py -> build/lib/zarr/_storage creating build/lib/zarr/tests copying zarr/tests/__init__.py -> build/lib/zarr/tests copying zarr/tests/conftest.py -> build/lib/zarr/tests copying zarr/tests/test_attrs.py -> build/lib/zarr/tests copying zarr/tests/test_convenience.py -> build/lib/zarr/tests copying zarr/tests/test_creation.py -> build/lib/zarr/tests copying zarr/tests/test_dim_separator.py -> build/lib/zarr/tests copying zarr/tests/test_filters.py -> build/lib/zarr/tests copying zarr/tests/test_hierarchy.py -> build/lib/zarr/tests copying zarr/tests/test_indexing.py -> build/lib/zarr/tests copying zarr/tests/test_info.py -> build/lib/zarr/tests copying zarr/tests/test_meta.py -> build/lib/zarr/tests copying zarr/tests/test_meta_array.py -> build/lib/zarr/tests copying zarr/tests/test_n5.py -> build/lib/zarr/tests copying zarr/tests/test_storage_v3.py -> build/lib/zarr/tests copying zarr/tests/test_sync.py -> build/lib/zarr/tests copying zarr/tests/test_util.py -> build/lib/zarr/tests copying zarr/tests/util.py -> build/lib/zarr/tests copying zarr/tests/test_storage.py -> build/lib/zarr/tests copying zarr/tests/test_core.py -> build/lib/zarr/tests running egg_info writing zarr.egg-info/PKG-INFO writing dependency_links to zarr.egg-info/dependency_links.txt writing requirements to zarr.egg-info/requires.txt writing top-level names to zarr.egg-info/top_level.txt reading manifest file 'zarr.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'zarr.egg-info/SOURCES.txt' /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'zarr.tests.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'zarr.tests.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'zarr.tests.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'zarr.tests.data' to be distributed and are already explicitly excluding 'zarr.tests.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'zarr.tests.data.store' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'zarr.tests.data.store' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'zarr.tests.data.store' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'zarr.tests.data.store' to be distributed and are already explicitly excluding 'zarr.tests.data.store' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating build/lib/zarr/tests/data copying zarr/tests/data/store.zip -> build/lib/zarr/tests/data creating build/lib/zarr/tests/data/store copying zarr/tests/data/store/foo -> build/lib/zarr/tests/data/store installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/zarr copying build/lib/zarr/__init__.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/attrs.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/codecs.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/context.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/convenience.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/core.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/creation.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/errors.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/hierarchy.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/indexing.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/meta.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/meta_v1.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/n5.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/storage.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/sync.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/types.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/util.py -> build/bdist.linux-aarch64/wheel/./zarr copying build/lib/zarr/version.py -> build/bdist.linux-aarch64/wheel/./zarr creating build/bdist.linux-aarch64/wheel/zarr/_storage copying build/lib/zarr/_storage/__init__.py -> build/bdist.linux-aarch64/wheel/./zarr/_storage copying build/lib/zarr/_storage/absstore.py -> build/bdist.linux-aarch64/wheel/./zarr/_storage copying build/lib/zarr/_storage/store.py -> build/bdist.linux-aarch64/wheel/./zarr/_storage copying build/lib/zarr/_storage/v3.py -> build/bdist.linux-aarch64/wheel/./zarr/_storage copying build/lib/zarr/_storage/v3_storage_transformers.py -> build/bdist.linux-aarch64/wheel/./zarr/_storage creating build/bdist.linux-aarch64/wheel/zarr/tests copying build/lib/zarr/tests/__init__.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/conftest.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_attrs.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_convenience.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_creation.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_dim_separator.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_filters.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_hierarchy.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_indexing.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_info.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_meta.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_meta_array.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_n5.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_storage_v3.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_sync.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_util.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/util.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_storage.py -> build/bdist.linux-aarch64/wheel/./zarr/tests copying build/lib/zarr/tests/test_core.py -> build/bdist.linux-aarch64/wheel/./zarr/tests creating build/bdist.linux-aarch64/wheel/zarr/tests/data copying build/lib/zarr/tests/data/store.zip -> build/bdist.linux-aarch64/wheel/./zarr/tests/data creating build/bdist.linux-aarch64/wheel/zarr/tests/data/store copying build/lib/zarr/tests/data/store/foo -> build/bdist.linux-aarch64/wheel/./zarr/tests/data/store running install_egg_info Copying zarr.egg-info to build/bdist.linux-aarch64/wheel/./zarr-2.18.4-py3.13.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/zarr-2.18.4.dist-info/WHEEL creating '/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir/pip-wheel-vnspze86/.tmp-j0rilszq/zarr-2.18.4-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'zarr/__init__.py' adding 'zarr/attrs.py' adding 'zarr/codecs.py' adding 'zarr/context.py' adding 'zarr/convenience.py' adding 'zarr/core.py' adding 'zarr/creation.py' adding 'zarr/errors.py' adding 'zarr/hierarchy.py' adding 'zarr/indexing.py' adding 'zarr/meta.py' adding 'zarr/meta_v1.py' adding 'zarr/n5.py' adding 'zarr/storage.py' adding 'zarr/sync.py' adding 'zarr/types.py' adding 'zarr/util.py' adding 'zarr/version.py' adding 'zarr/_storage/__init__.py' adding 'zarr/_storage/absstore.py' adding 'zarr/_storage/store.py' adding 'zarr/_storage/v3.py' adding 'zarr/_storage/v3_storage_transformers.py' adding 'zarr/tests/__init__.py' adding 'zarr/tests/conftest.py' adding 'zarr/tests/test_attrs.py' adding 'zarr/tests/test_convenience.py' adding 'zarr/tests/test_core.py' adding 'zarr/tests/test_creation.py' adding 'zarr/tests/test_dim_separator.py' adding 'zarr/tests/test_filters.py' adding 'zarr/tests/test_hierarchy.py' adding 'zarr/tests/test_indexing.py' adding 'zarr/tests/test_info.py' adding 'zarr/tests/test_meta.py' adding 'zarr/tests/test_meta_array.py' adding 'zarr/tests/test_n5.py' adding 'zarr/tests/test_storage.py' adding 'zarr/tests/test_storage_v3.py' adding 'zarr/tests/test_sync.py' adding 'zarr/tests/test_util.py' adding 'zarr/tests/util.py' adding 'zarr/tests/data/store.zip' adding 'zarr/tests/data/store/foo' adding 'zarr-2.18.4.dist-info/LICENSE.txt' adding 'zarr-2.18.4.dist-info/METADATA' adding 'zarr-2.18.4.dist-info/WHEEL' adding 'zarr-2.18.4.dist-info/top_level.txt' adding 'zarr-2.18.4.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Building wheel for zarr (pyproject.toml): finished with status 'done' Created wheel for zarr: filename=zarr-2.18.4-py3-none-any.whl size=210422 sha256=2f553cc6692e8260c194272709075350a012ff5908dac813962a37cb60d9a1e4 Stored in directory: /builddir/.cache/pip/wheels/a3/08/5a/a372aa3eb79a0d3a3a20d62893d35fc889276a7d656addd3e4 Successfully built zarr + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.JpAzZD + umask 022 + cd /builddir/build/BUILD/python-zarr-2.18.4-build + '[' /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-zarr-2.18.4-build + mkdir /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd zarr-2.18.4 ++ ls /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/pyproject-wheeldir/zarr-2.18.4-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=zarr==2.18.4 + '[' -z zarr==2.18.4 ']' + TMPDIR=/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/pyproject-wheeldir zarr==2.18.4 Using pip 25.0.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/pyproject-wheeldir Processing ./pyproject-wheeldir/zarr-2.18.4-py3-none-any.whl Installing collected packages: zarr Successfully installed zarr-2.18.4 + '[' -d /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + site_dirs+=("/usr/lib/python3.13/site-packages") + '[' /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.13/site-packages/zarr-2.18.4.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr-2.18.4.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT --record /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr-2.18.4.dist-info/RECORD --output /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-record + rm -fv /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr-2.18.4.dist-info/RECORD removed '/builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr-2.18.4.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr-2.18.4.dist-info/REQUESTED removed '/builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr-2.18.4.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-files --output-modules /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-modules --buildroot /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-zarr-2.18.4-build/python-zarr-2.18.4-2.fc43.noarch-pyproject-record --prefix /usr -l zarr + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j12 Bytecompiling .py files below /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j12 /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/_storage/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents 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/builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_filters.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/util.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/_storage/__pycache__/absstore.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_attrs.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_n5.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_n5.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/_storage/__pycache__/v3_storage_transformers.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/_storage/__pycache__/v3_storage_transformers.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_attrs.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_meta_array.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_meta.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_meta_array.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/_storage/__pycache__/store.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/_storage/__pycache__/v3.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_meta.cpython-313.opt-1.pyc: replacing with normalized version 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/builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/__init__.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/__init__.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/context.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/meta_v1.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/errors.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_creation.cpython-313.opt-1.pyc: replacing 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/builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_hierarchy.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/convenience.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/codecs.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/attrs.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/n5.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/version.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/hierarchy.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/n5.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/util.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/util.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/creation.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/hierarchy.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/meta.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_storage.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/indexing.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/sync.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/indexing.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/meta.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/core.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_storage.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_core.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/storage.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/__pycache__/storage.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages/zarr/tests/__pycache__/test_core.cpython-313.opt-1.pyc: replacing with normalized version Scanned 14 directories and 133 files, processed 68 inodes, 67 modified (50 replaced + 17 rewritten), 0 unsupported format, 0 errors Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.fwv9DP + umask 022 + cd /builddir/build/BUILD/python-zarr-2.18.4-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd zarr-2.18.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + PATH=/builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-zarr-2.18.4-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=12 + /usr/bin/pytest -ra ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 rootdir: /builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4 configfile: pyproject.toml collected 4975 items zarr/tests/test_attrs.py .................... 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[100%] =================================== FAILURES =================================== ________________ TestArrayWithFSStorePartialRead.test_array_1d _________________ self = def test_array_1d(self): a = np.arange(1050) z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) # check properties assert len(a) == len(z) assert a.ndim == z.ndim assert a.shape == z.shape assert a.dtype == z.dtype assert (100,) == z.chunks assert a.nbytes == z.nbytes assert 11 == z.nchunks assert 0 == z.nchunks_initialized assert (11,) == z.cdata_shape # check empty b = z[:] assert isinstance(b, np.ndarray) assert a.shape == b.shape assert a.dtype == b.dtype # check attributes z.attrs["foo"] = "bar" assert "bar" == z.attrs["foo"] # set data z[:] = a # check properties assert a.nbytes == z.nbytes assert 11 == z.nchunks assert 11 == z.nchunks_initialized # check slicing > assert_array_equal(a, np.array(z)) zarr/tests/test_core.py:288: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:580: in __array__ return np.array(self[...], *args, **kwargs) zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08 \x03\x00\x00\x00\x01\x00\x00\xab\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ___________ TestArrayWithFSStorePartialRead.test_array_1d_fill_value ___________ self = def test_array_1d_fill_value(self): for fill_value in -1, 0, 1, 10: a = np.arange(1050) f = np.empty_like(a) f.fill(fill_value) z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, fill_value=fill_value) z[190:310] = a[190:310] > assert_array_equal(f[:190], z[:190]) zarr/tests/test_core.py:344: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08 \x03\x00\x00\x00\x01\x00\x00}\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ___________ TestArrayWithFSStorePartialRead.test_array_1d_selections ___________ self = def test_array_1d_selections(self): # light test here, full tests in test_indexing # setup a = np.arange(1050) z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) z[:] = a # get > assert_array_equal(a[50:150], z.get_orthogonal_selection(slice(50, 150))) zarr/tests/test_core.py:378: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:1078: in get_orthogonal_selection return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08 \x03\x00\x00\x00\x01\x00\x00\xd2\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ________________ TestArrayWithFSStorePartialRead.test_array_2d _________________ self = def test_array_2d(self): a = np.arange(10000).reshape((1000, 10)) z = self.create_array(shape=a.shape, chunks=(100, 2), dtype=a.dtype) # check properties assert len(a) == len(z) assert a.ndim == z.ndim assert a.shape == z.shape assert a.dtype == z.dtype assert (100, 2) == z.chunks assert 0 == z.nchunks_initialized assert (10, 5) == z.cdata_shape # set data z[:] = a # check properties assert a.nbytes == z.nbytes assert 50 == z.nchunks_initialized # check array-like > assert_array_equal(a, np.array(z)) zarr/tests/test_core.py:440: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:580: in __array__ return np.array(self[...], *args, **kwargs) zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08@\x06\x00\x00\x00\x01\x00\x00\xb2\x01\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ___________ TestArrayWithFSStorePartialRead.test_array_2d_edge_case ____________ self = def test_array_2d_edge_case(self): # this fails with filters - chunks extend beyond edge of array, messes with delta # filter if no fill value? shape = 1000, 10 chunks = 300, 30 dtype = "i8" z = self.create_array(shape=shape, dtype=dtype, chunks=chunks) z[:] = 0 expect = np.zeros(shape, dtype=dtype) > actual = z[:] zarr/tests/test_core.py:537: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08@\x19\x01\x00\x00\x01\x00\x00\xfe\x14\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ____________ TestArrayWithFSStorePartialRead.test_array_2d_partial _____________ self = def test_array_2d_partial(self): z = self.create_array(shape=(1000, 10), chunks=(100, 2), dtype="i4", fill_value=0) # check partial assignment, single row c = np.arange(z.shape[1]) z[0, :] = c with pytest.raises(ValueError): # N.B., NumPy allows this, but we'll be strict for now z[2:3] = c with pytest.raises(ValueError): # N.B., NumPy allows this, but we'll be strict for now z[-1:] = c z[2:3] = c[None, :] z[-1:] = c[None, :] > assert_array_equal(c, z[0, :]) zarr/tests/test_core.py:556: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:796: in __getitem__ result = self.get_orthogonal_selection(pure_selection, fields=fields) zarr/core.py:1078: in get_orthogonal_selection return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x04 \x03\x00\x00\x00\x01\x00\x00f\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _______________ TestArrayWithFSStorePartialRead.test_array_order _______________ self = def test_array_order(self): # 1D a = np.arange(1050) for order in "C", "F": z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, order=order) assert order == z.order if order == "F": assert z[:].flags.f_contiguous else: assert z[:].flags.c_contiguous z[:] = a > assert_array_equal(a, z[:]) zarr/tests/test_core.py:594: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08 \x03\x00\x00\x00\x01\x00\x00\xab\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ________________ TestArrayWithFSStorePartialRead.test_resize_1d ________________ self = def test_resize_1d(self): z = self.create_array(shape=105, chunks=10, dtype="i4", fill_value=0) a = np.arange(105, dtype="i4") z[:] = a assert (105,) == z.shape > assert (105,) == z[:].shape zarr/tests/test_core.py:690: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x04(\x00\x00\x00(\x00\x00\x008\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ________________ TestArrayWithFSStorePartialRead.test_resize_2d ________________ self = def test_resize_2d(self): z = self.create_array(shape=(105, 105), chunks=(10, 10), dtype="i4", fill_value=0) a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) z[:] = a assert (105, 105) == z.shape > assert (105, 105) == z[:].shape zarr/tests/test_core.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xbe\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ________________ TestArrayWithFSStorePartialRead.test_append_1d ________________ self = def test_append_1d(self): a = np.arange(105) z = self.create_array(shape=a.shape, chunks=10, dtype=a.dtype) z[:] = a assert a.shape == z.shape assert a.dtype == z.dtype assert (10,) == z.chunks > assert_array_equal(a, z[:]) zarr/tests/test_core.py:787: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x08P\x00\x00\x00P\x00\x00\x00`\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ________________ TestArrayWithFSStorePartialRead.test_append_2d ________________ self = def test_append_2d(self): a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) z[:] = a assert a.shape == z.shape assert a.dtype == z.dtype assert (10, 10) == z.chunks > actual = z[:] zarr/tests/test_core.py:815: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xbe\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _____________ TestArrayWithFSStorePartialRead.test_append_2d_axis ______________ self = def test_append_2d_axis(self): a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) z[:] = a assert a.shape == z.shape assert a.dtype == z.dtype assert (10, 10) == z.chunks > assert_array_equal(a, z[:]) zarr/tests/test_core.py:836: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xbe\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ________________ TestArrayWithFSStorePartialRead.test_np_ufuncs ________________ self = def test_np_ufuncs(self): z = self.create_array(shape=(100, 100), chunks=(10, 10)) a = np.arange(10000).reshape(100, 100) z[:] = a > assert np.sum(a) == np.sum(z) zarr/tests/test_core.py:928: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib64/python3.13/site-packages/numpy/_core/fromnumeric.py:2466: in sum return _wrapreduction( /usr/lib64/python3.13/site-packages/numpy/_core/fromnumeric.py:86: in _wrapreduction return ufunc.reduce(obj, axis, dtype, out, **passkwargs) zarr/core.py:580: in __array__ return np.array(self[...], *args, **kwargs) zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08 \x03\x00\x00\x00\x01\x00\x00-\x01\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ____________ TestArrayWithFSStorePartialRead.test_array_dtype_shape ____________ self = def test_array_dtype_shape(self): dt = "(2, 2)f4" # setup some data d = np.array([((0, 1), (1, 2)), ((1, 2), (2, 3)), ((2, 3), (3, 4))], dtype=dt) for a in (d, d[:0]): for fill_value in None, 0: z = self.create_array(shape=a.shape[:-2], chunks=2, dtype=dt, fill_value=fill_value) assert len(a) == len(z) if fill_value is not None: assert fill_value == z.fill_value z[...] = a > assert_array_equal(a, z[...]) zarr/tests/test_core.py:1112: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x04 \x00\x00\x00 \x00\x00\x000\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ____________ TestArrayWithFSStorePartialRead.test_structured_array _____________ self = def test_structured_array(self): d = np.array( [(b"aaa", 1, 4.2), (b"bbb", 2, 8.4), (b"ccc", 3, 12.6)], dtype=[("foo", "S3"), ("bar", "i4"), ("baz", "f8")], ) fill_values = None, b"", (b"zzz", 42, 16.8) > self.check_structured_array(d, fill_values) zarr/tests/test_core.py:1162: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/tests/test_core.py:1147: in check_structured_array assert a[0] == z[0] zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x0f\x1e\x00\x00\x00\x1e\x00\x00\x00.\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _______ TestArrayWithFSStorePartialRead.test_structured_array_subshapes ________ self = def test_structured_array_subshapes(self): d = np.array( [ (0, ((0, 1, 2), (1, 2, 3)), b"aaa"), (1, ((1, 2, 3), (2, 3, 4)), b"bbb"), (2, ((2, 3, 4), (3, 4, 5)), b"ccc"), ], dtype=[("foo", "i8"), ("bar", "(2, 3)f4"), ("baz", "S3")], ) fill_values = None, b"", (0, ((0, 0, 0), (1, 1, 1)), b"zzz") > self.check_structured_array(d, fill_values) zarr/tests/test_core.py:1174: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/tests/test_core.py:1147: in check_structured_array assert a[0] == z[0] zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013#F\x00\x00\x00F\x00\x00\x00V\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _________ TestArrayWithFSStorePartialRead.test_structured_array_nested _________ self = def test_structured_array_nested(self): d = np.array( [ (0, (0, ((0, 1), (1, 2), (2, 3)), 0), b"aaa"), (1, (1, ((1, 2), (2, 3), (3, 4)), 1), b"bbb"), (2, (2, ((2, 3), (3, 4), (4, 5)), 2), b"ccc"), ], dtype=[ ("foo", "i8"), ("bar", [("foo", "i4"), ("bar", "(3, 2)f4"), ("baz", "u1")]), ("baz", "S3"), ], ) fill_values = None, b"", (0, (0, ((0, 0), (1, 1), (2, 2)), 0), b"zzz") > self.check_structured_array(d, fill_values) zarr/tests/test_core.py:1190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/tests/test_core.py:1147: in check_structured_array assert a[0] == z[0] zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013(P\x00\x00\x00P\x00\x00\x00`\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _________________ TestArrayWithFSStorePartialRead.test_dtypes __________________ self = def test_dtypes(self): # integers for dtype in "u1", "u2", "u4", "u8", "i1", "i2", "i4", "i8": z = self.create_array(shape=10, chunks=3, dtype=dtype) assert z.dtype == np.dtype(dtype) a = np.arange(z.shape[0], dtype=dtype) z[:] = a > assert_array_equal(a, z[:]) zarr/tests/test_core.py:1199: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x01\x03\x00\x00\x00\x03\x00\x00\x00\x13\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning __________________ TestArrayWithFSStorePartialRead.test_iter ___________________ self = def test_iter(self): params = ( ((1,), (1,)), ((2,), (1,)), ((1,), (2,)), ((3,), (3,)), ((1000,), (100,)), ((100,), (1000,)), ((1, 100), (1, 1)), ((1, 0), (1, 1)), ((0, 1), (1, 1)), ((0, 1), (2, 1)), ((100, 1), (3, 1)), ((100, 100), (10, 10)), ((10, 10, 10), (3, 3, 3)), ) for shape, chunks in params: z = self.create_array(shape=shape, chunks=chunks, dtype=int) a = np.arange(np.prod(shape)).reshape(shape) z[:] = a > for expect, actual in zip_longest(a, z): zarr/tests/test_core.py:1542: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:637: in islice chunk = self[j : j + chunk_size] zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x08\x10\x00\x00\x00\x10\x00\x00\x00 \x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _________________ TestArrayWithFSStorePartialRead.test_islice __________________ self = def test_islice(self): params = ( ((1,), (1,), 0, 1), ((2,), (1,), 0, 1), ((1,), (2,), 0, 1), ((3,), (3,), 1, 2), ((1000,), (100,), 150, 1050), ((100,), (1000,), 25, 75), ((1, 100), (1, 1), 0, 1), ((100, 1), (3, 1), 56, 100), ((100, 100), (10, 10), 13, 99), ((10, 10, 10), (3, 3, 3), 2, 4), ) for shape, chunks, start, end in params: z = self.create_array(shape=shape, chunks=chunks, dtype=int) a = np.arange(np.prod(shape)).reshape(shape) z[:] = a end_array = min(end, a.shape[0]) > for expect, actual in zip_longest(a[start:end_array], z.islice(start, end)): zarr/tests/test_core.py:1564: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:637: in islice chunk = self[j : j + chunk_size] zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x08\x10\x00\x00\x00\x10\x00\x00\x00 \x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ________________ TestArrayWithFSStorePartialRead.test_non_cont _________________ self = def test_non_cont(self): z = self.create_array(shape=(500, 500, 500), chunks=(50, 50, 50), dtype=" assert z[0, :, 0].any() zarr/tests/test_core.py:2509: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:796: in __getitem__ result = self.get_orthogonal_selection(pure_selection, fields=fields) zarr/core.py:1078: in get_orthogonal_selection return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x04 \xa1\x07\x00\x00\x01\x00\x00>\xb7\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _ TestArrayWithFSStorePartialRead.test_read_nitems_less_than_blocksize_from_multiple_chunks _ self = def test_read_nitems_less_than_blocksize_from_multiple_chunks(self): """Tests to make sure decompression doesn't fail when `nitems` is less than a compressed block size, but covers multiple blocks """ z = self.create_array(shape=1000000, chunks=100_000) z[40_000:80_000] = 1 path = None if self.version == 2 else z.path b = Array(z.store, path=path, read_only=True, partial_decompress=True) > assert (b[40_000:80_000] == 1).all() zarr/tests/test_core.py:2519: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08\x005\x0c\x00\x00\x01\x00\x00\xd3\x18\x01\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning __________ TestArrayWithFSStorePartialRead.test_read_from_all_blocks ___________ self = def test_read_from_all_blocks(self): """Tests to make sure `PartialReadBuffer.read_part` doesn't fail when stop isn't in the `start_points` array """ z = self.create_array(shape=1000000, chunks=100_000) z[2:99_000] = 1 path = None if self.version == 2 else z.path b = Array(z.store, path=path, read_only=True, partial_decompress=True) > assert (b[2:99_000] == 1).all() zarr/tests/test_core.py:2529: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08\x005\x0c\x00\x00\x01\x00\x00\xe7`\x01\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _____________ TestArrayWithFSStoreNestedPartialRead.test_array_1d ______________ self = def test_array_1d(self): a = np.arange(1050) z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) # check properties assert len(a) == len(z) assert a.ndim == z.ndim assert a.shape == z.shape assert a.dtype == z.dtype assert (100,) == z.chunks assert a.nbytes == z.nbytes assert 11 == z.nchunks assert 0 == z.nchunks_initialized assert (11,) == z.cdata_shape # check empty b = z[:] assert isinstance(b, np.ndarray) assert a.shape == b.shape assert a.dtype == b.dtype # check attributes z.attrs["foo"] = "bar" assert "bar" == z.attrs["foo"] # set data z[:] = a # check properties assert a.nbytes == z.nbytes assert 11 == z.nchunks assert 11 == z.nchunks_initialized # check slicing > assert_array_equal(a, np.array(z)) zarr/tests/test_core.py:288: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:580: in __array__ return np.array(self[...], *args, **kwargs) zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08 \x03\x00\x00 \x03\x00\x00n\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ________ TestArrayWithFSStoreNestedPartialRead.test_array_1d_fill_value ________ self = def test_array_1d_fill_value(self): for fill_value in -1, 0, 1, 10: a = np.arange(1050) f = np.empty_like(a) f.fill(fill_value) z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, fill_value=fill_value) z[190:310] = a[190:310] > assert_array_equal(f[:190], z[:190]) zarr/tests/test_core.py:344: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08 \x03\x00\x00 \x03\x00\x00?\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ________ TestArrayWithFSStoreNestedPartialRead.test_array_1d_selections ________ self = def test_array_1d_selections(self): # light test here, full tests in test_indexing # setup a = np.arange(1050) z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) z[:] = a # get > assert_array_equal(a[50:150], z.get_orthogonal_selection(slice(50, 150))) zarr/tests/test_core.py:378: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:1078: in get_orthogonal_selection return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08 \x03\x00\x00 \x03\x00\x00\x8e\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _____________ TestArrayWithFSStoreNestedPartialRead.test_array_2d ______________ self = def test_array_2d(self): a = np.arange(10000).reshape((1000, 10)) z = self.create_array(shape=a.shape, chunks=(100, 2), dtype=a.dtype) # check properties assert len(a) == len(z) assert a.ndim == z.ndim assert a.shape == z.shape assert a.dtype == z.dtype assert (100, 2) == z.chunks assert 0 == z.nchunks_initialized assert (10, 5) == z.cdata_shape # set data z[:] = a # check properties assert a.nbytes == z.nbytes assert 50 == z.nchunks_initialized # check array-like > assert_array_equal(a, np.array(z)) zarr/tests/test_core.py:440: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:580: in __array__ return np.array(self[...], *args, **kwargs) zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x01!\x08@\x06\x00\x00@\x06\x00\x00X\x01\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ________ TestArrayWithFSStoreNestedPartialRead.test_array_2d_edge_case _________ self = def test_array_2d_edge_case(self): # this fails with filters - chunks extend beyond edge of array, messes with delta # filter if no fill value? shape = 1000, 10 chunks = 300, 30 dtype = "i8" z = self.create_array(shape=shape, dtype=dtype, chunks=chunks) z[:] = 0 expect = np.zeros(shape, dtype=dtype) > actual = z[:] zarr/tests/test_core.py:537: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x01!\x08@\x19\x01\x00@\x19\x01\x00\xa4\x01\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _________ TestArrayWithFSStoreNestedPartialRead.test_array_2d_partial __________ self = def test_array_2d_partial(self): z = self.create_array(shape=(1000, 10), chunks=(100, 2), dtype="i4", fill_value=0) # check partial assignment, single row c = np.arange(z.shape[1]) z[0, :] = c with pytest.raises(ValueError): # N.B., NumPy allows this, but we'll be strict for now z[2:3] = c with pytest.raises(ValueError): # N.B., NumPy allows this, but we'll be strict for now z[-1:] = c z[2:3] = c[None, :] z[-1:] = c[None, :] > assert_array_equal(c, z[0, :]) zarr/tests/test_core.py:556: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:796: in __getitem__ result = self.get_orthogonal_selection(pure_selection, fields=fields) zarr/core.py:1078: in get_orthogonal_selection return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x01!\x04 \x03\x00\x00 \x03\x00\x00Z\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ____________ TestArrayWithFSStoreNestedPartialRead.test_array_order ____________ self = def test_array_order(self): # 1D a = np.arange(1050) for order in "C", "F": z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, order=order) assert order == z.order if order == "F": assert z[:].flags.f_contiguous else: assert z[:].flags.c_contiguous z[:] = a > assert_array_equal(a, z[:]) zarr/tests/test_core.py:594: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08 \x03\x00\x00 \x03\x00\x00n\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _____________ TestArrayWithFSStoreNestedPartialRead.test_resize_1d _____________ self = def test_resize_1d(self): z = self.create_array(shape=105, chunks=10, dtype="i4", fill_value=0) a = np.arange(105, dtype="i4") z[:] = a assert (105,) == z.shape > assert (105,) == z[:].shape zarr/tests/test_core.py:690: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x04(\x00\x00\x00(\x00\x00\x008\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _____________ TestArrayWithFSStoreNestedPartialRead.test_resize_2d _____________ self = def test_resize_2d(self): z = self.create_array(shape=(105, 105), chunks=(10, 10), dtype="i4", fill_value=0) a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) z[:] = a assert (105, 105) == z.shape > assert (105, 105) == z[:].shape zarr/tests/test_core.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\xa3\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _____________ TestArrayWithFSStoreNestedPartialRead.test_append_1d _____________ self = def test_append_1d(self): a = np.arange(105) z = self.create_array(shape=a.shape, chunks=10, dtype=a.dtype) z[:] = a assert a.shape == z.shape assert a.dtype == z.dtype assert (10,) == z.chunks > assert_array_equal(a, z[:]) zarr/tests/test_core.py:787: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x08P\x00\x00\x00P\x00\x00\x00`\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _____________ TestArrayWithFSStoreNestedPartialRead.test_append_2d _____________ self = def test_append_2d(self): a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) z[:] = a assert a.shape == z.shape assert a.dtype == z.dtype assert (10, 10) == z.chunks > actual = z[:] zarr/tests/test_core.py:815: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\xa3\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning __________ TestArrayWithFSStoreNestedPartialRead.test_append_2d_axis ___________ self = def test_append_2d_axis(self): a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) z[:] = a assert a.shape == z.shape assert a.dtype == z.dtype assert (10, 10) == z.chunks > assert_array_equal(a, z[:]) zarr/tests/test_core.py:836: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\xa3\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _____________ TestArrayWithFSStoreNestedPartialRead.test_np_ufuncs _____________ self = def test_np_ufuncs(self): z = self.create_array(shape=(100, 100), chunks=(10, 10)) a = np.arange(10000).reshape(100, 100) z[:] = a > assert np.sum(a) == np.sum(z) zarr/tests/test_core.py:928: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib64/python3.13/site-packages/numpy/_core/fromnumeric.py:2466: in sum return _wrapreduction( /usr/lib64/python3.13/site-packages/numpy/_core/fromnumeric.py:86: in _wrapreduction return ufunc.reduce(obj, axis, dtype, out, **passkwargs) zarr/core.py:580: in __array__ return np.array(self[...], *args, **kwargs) zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x011\x08 \x03\x00\x00 \x03\x00\x00\xed\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _________ TestArrayWithFSStoreNestedPartialRead.test_array_dtype_shape _________ self = def test_array_dtype_shape(self): dt = "(2, 2)f4" # setup some data d = np.array([((0, 1), (1, 2)), ((1, 2), (2, 3)), ((2, 3), (3, 4))], dtype=dt) for a in (d, d[:0]): for fill_value in None, 0: z = self.create_array(shape=a.shape[:-2], chunks=2, dtype=dt, fill_value=fill_value) assert len(a) == len(z) if fill_value is not None: assert fill_value == z.fill_value z[...] = a > assert_array_equal(a, z[...]) zarr/tests/test_core.py:1112: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x04 \x00\x00\x00 \x00\x00\x000\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _________ TestArrayWithFSStoreNestedPartialRead.test_structured_array __________ self = def test_structured_array(self): d = np.array( [(b"aaa", 1, 4.2), (b"bbb", 2, 8.4), (b"ccc", 3, 12.6)], dtype=[("foo", "S3"), ("bar", "i4"), ("baz", "f8")], ) fill_values = None, b"", (b"zzz", 42, 16.8) > self.check_structured_array(d, fill_values) zarr/tests/test_core.py:1162: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/tests/test_core.py:1147: in check_structured_array assert a[0] == z[0] zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x0f\x1e\x00\x00\x00\x1e\x00\x00\x00.\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ____ TestArrayWithFSStoreNestedPartialRead.test_structured_array_subshapes _____ self = def test_structured_array_subshapes(self): d = np.array( [ (0, ((0, 1, 2), (1, 2, 3)), b"aaa"), (1, ((1, 2, 3), (2, 3, 4)), b"bbb"), (2, ((2, 3, 4), (3, 4, 5)), b"ccc"), ], dtype=[("foo", "i8"), ("bar", "(2, 3)f4"), ("baz", "S3")], ) fill_values = None, b"", (0, ((0, 0, 0), (1, 1, 1)), b"zzz") > self.check_structured_array(d, fill_values) zarr/tests/test_core.py:1174: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/tests/test_core.py:1147: in check_structured_array assert a[0] == z[0] zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013#F\x00\x00\x00F\x00\x00\x00V\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ______ TestArrayWithFSStoreNestedPartialRead.test_structured_array_nested ______ self = def test_structured_array_nested(self): d = np.array( [ (0, (0, ((0, 1), (1, 2), (2, 3)), 0), b"aaa"), (1, (1, ((1, 2), (2, 3), (3, 4)), 1), b"bbb"), (2, (2, ((2, 3), (3, 4), (4, 5)), 2), b"ccc"), ], dtype=[ ("foo", "i8"), ("bar", [("foo", "i4"), ("bar", "(3, 2)f4"), ("baz", "u1")]), ("baz", "S3"), ], ) fill_values = None, b"", (0, (0, ((0, 0), (1, 1), (2, 2)), 0), b"zzz") > self.check_structured_array(d, fill_values) zarr/tests/test_core.py:1190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/tests/test_core.py:1147: in check_structured_array assert a[0] == z[0] zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013(P\x00\x00\x00P\x00\x00\x00`\x00\x00\x00',), kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ______________ TestArrayWithFSStoreNestedPartialRead.test_dtypes _______________ self = def test_dtypes(self): # integers for dtype in "u1", "u2", "u4", "u8", "i1", "i2", "i4", "i8": z = self.create_array(shape=10, chunks=3, dtype=dtype) assert z.dtype == np.dtype(dtype) a = np.arange(z.shape[0], dtype=dtype) z[:] = a > assert_array_equal(a, z[:]) zarr/tests/test_core.py:1199: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x01\x03\x00\x00\x00\x03\x00\x00\x00\x13\x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _______________ TestArrayWithFSStoreNestedPartialRead.test_iter ________________ self = def test_iter(self): params = ( ((1,), (1,)), ((2,), (1,)), ((1,), (2,)), ((3,), (3,)), ((1000,), (100,)), ((100,), (1000,)), ((1, 100), (1, 1)), ((1, 0), (1, 1)), ((0, 1), (1, 1)), ((0, 1), (2, 1)), ((100, 1), (3, 1)), ((100, 100), (10, 10)), ((10, 10, 10), (3, 3, 3)), ) for shape, chunks in params: z = self.create_array(shape=shape, chunks=chunks, dtype=int) a = np.arange(np.prod(shape)).reshape(shape) z[:] = a > for expect, actual in zip_longest(a, z): zarr/tests/test_core.py:1542: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:637: in islice chunk = self[j : j + chunk_size] zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x08\x10\x00\x00\x00\x10\x00\x00\x00 \x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning ______________ TestArrayWithFSStoreNestedPartialRead.test_islice _______________ self = def test_islice(self): params = ( ((1,), (1,), 0, 1), ((2,), (1,), 0, 1), ((1,), (2,), 0, 1), ((3,), (3,), 1, 2), ((1000,), (100,), 150, 1050), ((100,), (1000,), 25, 75), ((1, 100), (1, 1), 0, 1), ((100, 1), (3, 1), 56, 100), ((100, 100), (10, 10), 13, 99), ((10, 10, 10), (3, 3, 3), 2, 4), ) for shape, chunks, start, end in params: z = self.create_array(shape=shape, chunks=chunks, dtype=int) a = np.arange(np.prod(shape)).reshape(shape) z[:] = a end_array = min(end, a.shape[0]) > for expect, actual in zip_longest(a[start:end_array], z.islice(start, end)): zarr/tests/test_core.py:1564: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:637: in islice chunk = self[j : j + chunk_size] zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x013\x08\x10\x00\x00\x00\x10\x00\x00\x00 \x00\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _____________ TestArrayWithFSStoreNestedPartialRead.test_non_cont ______________ self = def test_non_cont(self): z = self.create_array(shape=(500, 500, 500), chunks=(50, 50, 50), dtype=" assert z[0, :, 0].any() zarr/tests/test_core.py:2570: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:796: in __getitem__ result = self.get_orthogonal_selection(pure_selection, fields=fields) zarr/core.py:1078: in get_orthogonal_selection return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x01!\x04 \xa1\x07\x00 \xa1\x07\x00\xf8\x07\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _ TestArrayWithFSStoreNestedPartialRead.test_read_nitems_less_than_blocksize_from_multiple_chunks _ self = def test_read_nitems_less_than_blocksize_from_multiple_chunks(self): """Tests to make sure decompression doesn't fail when `nitems` is less than a compressed block size, but covers multiple blocks """ z = self.create_array(shape=1000000, chunks=100_000) z[40_000:80_000] = 1 path = None if self.version == 2 else z.path b = Array(z.store, path=path, read_only=True, partial_decompress=True) > assert (b[40_000:80_000] == 1).all() zarr/tests/test_core.py:2580: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x01!\x08\x005\x0c\x00\x005\x0c\x00\xdc\x0c\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning _______ TestArrayWithFSStoreNestedPartialRead.test_read_from_all_blocks ________ self = def test_read_from_all_blocks(self): """Tests to make sure `PartialReadBuffer.read_part` doesn't fail when stop isn't in the `start_points` array """ z = self.create_array(shape=1000000, chunks=100_000) z[2:99_000] = 1 path = None if self.version == 2 else z.path b = Array(z.store, path=path, read_only=True, partial_decompress=True) > assert (b[2:99_000] == 1).all() zarr/tests/test_core.py:2590: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ zarr/core.py:798: in __getitem__ result = self.get_basic_selection(pure_selection, fields=fields) zarr/core.py:924: in get_basic_selection return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) zarr/core.py:966: in _get_basic_selection_nd return self._get_selection(indexer=indexer, out=out, fields=fields) zarr/core.py:1341: in _get_selection self._chunk_getitems( zarr/core.py:2186: in _chunk_getitems self._process_chunk( zarr/core.py:2066: in _process_chunk cdata.prepare_chunk() zarr/util.py:609: in prepare_chunk nbytes, self.cbytes, blocksize = cbuffer_sizes(header) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ wrapped_ = , instance_ = None args_ = (b'\x02\x01!\x08\x005\x0c\x00\x005\x0c\x00\xe0\x0c\x00\x00',) kwargs_ = {} @wrapt.decorator def wrapper_function(wrapped_, instance_, args_, kwargs_): msg = self.get_deprecated_msg(wrapped_, instance_) stacklevel = _routine_stacklevel + self.extra_stacklevel if self.action: with warnings.catch_warnings(): warnings.simplefilter(self.action, self.category) warnings.warn(msg, category=self.category, stacklevel=stacklevel) else: > warnings.warn(msg, category=self.category, stacklevel=stacklevel) E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. /usr/lib/python3.13/site-packages/deprecated/classic.py:198: DeprecationWarning =============================== warnings summary =============================== ../../../../../usr/lib/python3.13/site-packages/_pytest/config/__init__.py:1441 /usr/lib/python3.13/site-packages/_pytest/config/__init__.py:1441: PytestConfigWarning: Unknown config option: doctest_subpackage_requires self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") zarr/tests/test_core.py::TestArrayWithDBMStore::test_array_order /usr/lib/python3.13/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/zarr/indexing.py", line 355, in chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) ResourceWarning: unclosed database in warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) zarr/tests/test_core.py::TestArrayWithDBMStore::test_object_arrays_danger /usr/lib/python3.13/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/zarr/indexing.py", line 356, in chunk_selection = tuple(p.dim_chunk_sel for p in dim_projections) ResourceWarning: unclosed database in warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d /usr/lib/python3.13/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/zarr/indexing.py", line 357, in out_selection = tuple( ResourceWarning: unclosed database in warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_object_arrays_vlen_text /usr/lib/python3.13/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/zarr/util.py", line 249, in is_total_slice for it, sh in zip(item, shape) ~~~^^^^^^^^^^^^^ ResourceWarning: unclosed database in warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_islice /usr/lib/python3.13/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/zarr/indexing.py", line 355, in chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) ResourceWarning: unclosed database in warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) zarr/tests/test_core.py::TestArrayWithNoCompressor::test_resize_2d /usr/lib/python3.13/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/builddir/build/BUILD/python-zarr-2.18.4-build/zarr-2.18.4/zarr/indexing.py", line 356, in chunk_selection = tuple(p.dim_chunk_sel for p in dim_projections) ResourceWarning: unclosed database in warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) zarr/tests/test_filters.py::test_array_with_scaleoffset_filter /usr/lib64/python3.13/site-packages/numcodecs/fixedscaleoffset.py:97: RuntimeWarning: invalid value encountered in cast return enc.astype(self.astype, copy=False) zarr/tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray /usr/lib64/python3.13/zipfile/__init__.py:1643: UserWarning: Duplicate name: 'foo' return self._open_to_write(zinfo, force_zip64=force_zip64) zarr/tests/test_sync.py: 48 warnings /usr/lib64/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=684) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 10 durations ============================= 8.83s call zarr/tests/test_indexing.py::test_set_orthogonal_selection_3d 1.32s call zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 1.15s call zarr/tests/test_indexing.py::test_set_orthogonal_selection_2d 0.80s call zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont 0.78s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_iter 0.75s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_islice 0.75s call zarr/tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 0.65s call zarr/tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 0.59s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 0.57s call 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via environment variable SKIPPED [1] zarr/tests/test_hierarchy.py:249: Tests not enabled via environment variable SKIPPED [1] zarr/tests/test_hierarchy.py:303: Tests not enabled via environment variable SKIPPED [1] zarr/tests/test_hierarchy.py:892: Tests not enabled via environment variable SKIPPED [1] zarr/tests/test_hierarchy.py:1272: V3 is disabled SKIPPED [2] zarr/tests/test_hierarchy.py:1318: V3 is disabled SKIPPED [1] zarr/tests/test_hierarchy.py:1374: V3 is disabled SKIPPED [1] zarr/tests/test_hierarchy.py:1396: V3 is disabled SKIPPED [1] zarr/tests/test_hierarchy.py:1407: V3 is disabled SKIPPED [25] zarr/tests/test_hierarchy.py:1445: could not import 'lmdb': No module named 'lmdb' SKIPPED [1] zarr/tests/test_hierarchy.py:1518: V3 is disabled SKIPPED [1] zarr/tests/test_hierarchy.py:1885: V3 is disabled SKIPPED [48] zarr/tests/test_meta_array.py:109: could not import 'cupy': No module named 'cupy' SKIPPED [6] zarr/tests/test_storage.py:84: nested chunks are unsupported SKIPPED [2] zarr/tests/test_storage.py:1282: could not import 'requests': No module named 'requests' SKIPPED [2] zarr/tests/test_storage.py:1298: could not import 'requests': No module named 'requests' SKIPPED [25] zarr/tests/test_storage.py:1938: could not import 'lmdb': No module named 'lmdb' SKIPPED [6] zarr/tests/test_storage.py:145: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:149: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:178: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:186: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:198: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:220: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:232: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:243: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:259: Tests not enabled via environment variable SKIPPED [4] zarr/tests/test_storage.py:290: Tests not enabled via environment variable SKIPPED [2] zarr/tests/test_storage.py:315: Tests not enabled via environment variable SKIPPED [4] zarr/tests/test_storage.py:338: Tests not enabled via environment variable SKIPPED [9] zarr/tests/test_storage.py:486: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:506: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:509: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:512: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:515: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:518: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:521: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:576: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:657: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:764: Tests not enabled via environment variable SKIPPED [6] zarr/tests/test_storage.py:780: Tests not enabled via environment variable SKIPPED [2] zarr/tests/test_storage.py:2432: Tests not enabled via environment variable SKIPPED [2] zarr/tests/test_storage.py:2443: Tests not enabled via environment variable SKIPPED [2] zarr/tests/test_storage.py:2477: Tests not enabled via environment variable SKIPPED [2] zarr/tests/test_storage.py:2480: Tests not enabled via environment variable SKIPPED [2] zarr/tests/test_storage.py:2483: Tests not enabled via environment variable SKIPPED [1] zarr/tests/test_storage_v3.py:128: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:149: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:165: v3 api is not available SKIPPED [8] zarr/tests/test_storage.py:145: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:149: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:186: v3 api is not available SKIPPED [13] zarr/tests/test_storage.py:198: v3 api is not available SKIPPED [13] zarr/tests/test_storage.py:220: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:232: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:243: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:259: v3 api is not available SKIPPED [13] zarr/tests/test_storage.py:290: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:338: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:506: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:509: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:512: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:515: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:518: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:521: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:576: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:657: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:764: v3 api is not available SKIPPED [14] zarr/tests/test_storage.py:780: v3 api is not available SKIPPED [14] zarr/tests/test_storage_v3.py:194: v3 api is not available SKIPPED [39] zarr/tests/test_storage_v3.py:225: v3 api is not available SKIPPED [14] zarr/tests/test_storage_v3.py:258: v3 api is not available SKIPPED [14] zarr/tests/test_storage_v3.py:273: v3 api is not available SKIPPED [13] zarr/tests/test_storage_v3.py:277: v3 api is not available SKIPPED [14] zarr/tests/test_storage_v3.py:286: v3 api is not available SKIPPED [14] zarr/tests/test_storage_v3.py:314: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:347: v3 api is not available SKIPPED [13] zarr/tests/test_storage.py:178: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:989: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:994: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1025: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1049: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1054: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1066: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1070: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1076: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1088: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:368: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1132: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1144: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1160: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1177: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1187: v3 api is not available SKIPPED [2] zarr/tests/test_storage.py:1211: v3 api is not available SKIPPED [2] zarr/tests/test_storage.py:1233: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1249: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1277: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1282: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1298: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1347: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:386: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1817: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1826: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1836: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1842: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1849: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1856: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1882: v3 api is not available SKIPPED [4] zarr/tests/test_storage.py:1898: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1945: v3 api is not available SKIPPED [2] zarr/tests/test_storage.py:1960: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:1976: v3 api is not available SKIPPED [2] zarr/tests/test_storage_v3.py:194: Tests not enabled via environment variable SKIPPED [9] zarr/tests/test_storage_v3.py:225: Tests not enabled via environment variable SKIPPED [3] zarr/tests/test_storage_v3.py:258: Tests not enabled via environment variable SKIPPED [3] zarr/tests/test_storage_v3.py:273: Tests not enabled via environment variable SKIPPED [3] zarr/tests/test_storage_v3.py:277: Tests not enabled via environment variable SKIPPED [3] zarr/tests/test_storage_v3.py:286: Tests not enabled via environment variable SKIPPED [3] zarr/tests/test_storage_v3.py:314: Tests not enabled via environment variable SKIPPED [1] zarr/tests/test_storage.py:145: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:149: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:186: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:198: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:220: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:232: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:243: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:259: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:290: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:338: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:506: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:509: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:512: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:515: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:518: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:521: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:576: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:657: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:764: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:780: sharding is disabled SKIPPED [1] zarr/tests/test_storage_v3.py:194: sharding is disabled SKIPPED [3] zarr/tests/test_storage_v3.py:225: sharding is disabled SKIPPED [1] zarr/tests/test_storage_v3.py:258: sharding is disabled SKIPPED [1] zarr/tests/test_storage_v3.py:273: sharding is disabled SKIPPED [1] zarr/tests/test_storage_v3.py:277: sharding is disabled SKIPPED [1] zarr/tests/test_storage_v3.py:286: sharding is disabled SKIPPED [1] zarr/tests/test_storage_v3.py:314: sharding is disabled SKIPPED [1] zarr/tests/test_storage_v3.py:347: sharding is disabled SKIPPED [1] zarr/tests/test_storage_v3.py:542: sharding is disabled SKIPPED [1] zarr/tests/test_storage.py:2020: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:2085: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:2182: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:569: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:2497: v3 api is not available SKIPPED [1] zarr/tests/test_storage.py:2514: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:619: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:624: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:647: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:667: v3 api is not available SKIPPED [1] zarr/tests/test_storage_v3.py:687: v3 api is not available XFAIL zarr/tests/test_dim_separator.py::test_open[static_nested_legacy] - reason: XFAIL zarr/tests/test_dim_separator.py::test_fsstore[static_nested_legacy] - reason: XFAIL zarr/tests/test_dim_separator.py::test_directory[static_nested_legacy] - reason: XFAIL zarr/tests/test_dim_separator.py::test_nested[static_flat_legacy] - reason: XFAIL zarr/tests/test_dim_separator.py::test_nested[directory_default] - reason: XFAIL zarr/tests/test_dim_separator.py::test_nested[fs_default] - reason: XFAIL zarr/tests/test_indexing.py::test_PartialChunkIterator[selection8-arr8-None] - slice 2 is out of range XFAIL zarr/tests/test_indexing.py::test_PartialChunkIterator[selection9-arr9-None] - slice 2 is out of range FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_1d FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_1d_fill_value FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_1d_selections FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_2d FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_2d_edge_case FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_2d_partial FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_order FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_resize_1d FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_resize_2d FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_append_1d FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_append_2d FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_append_2d_axis FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_np_ufuncs FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_dtype_shape FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_structured_array FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_structured_array_subshapes FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_structured_array_nested FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_dtypes FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_iter - ... FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_islice FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_read_nitems_less_than_blocksize_from_multiple_chunks FAILED zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_read_from_all_blocks FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_1d FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_1d_fill_value FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_1d_selections FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_2d FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_2d_edge_case FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_2d_partial FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_order FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_resize_1d FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_resize_2d FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_append_1d FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_append_2d FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_append_2d_axis FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_np_ufuncs FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_dtype_shape FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_structured_array FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_structured_array_subshapes FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_structured_array_nested FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_dtypes FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_iter FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_islice FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_read_nitems_less_than_blocksize_from_multiple_chunks FAILED zarr/tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_read_from_all_blocks = 46 failed, 2539 passed, 2382 skipped, 8 xfailed, 57 warnings in 75.09s (0:01:15) = RPM build errors: error: Bad exit status from /var/tmp/rpm-tmp.fwv9DP (%check) Bad exit status from /var/tmp/rpm-tmp.fwv9DP (%check) Child return code was: 1 EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M a6162a62eaee42dcbf67bdaa955de3f2 -D /var/lib/mock/f43-build-58471277-6565731/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin \'--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"\' \'--setenv=PS1= \\s-\\v\\$ \' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c \'/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-zarr.spec\'\n', 1)] Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/mockbuild/trace_decorator.py", line 93, in trace result = func(*args, **kw) File "/usr/lib/python3.13/site-packages/mockbuild/util.py", line 610, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (cmd_pretty(command, env), output), child.returncode) mockbuild.exception.Error: Command failed: # /usr/bin/systemd-nspawn -q -M a6162a62eaee42dcbf67bdaa955de3f2 -D /var/lib/mock/f43-build-58471277-6565731/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.c94uj0oa:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-zarr.spec'